686 results match your criteria: "the Graduate University for Advanced Studies SOKENDAI[Affiliation]"
Front Syst Neurosci
June 2014
Division of Brain Biology, National Institute for Basic Biology Okazaki, Japan ; Department of Basic Biology, The Graduate University for Advanced Studies (Sokendai) Hayama, Japan.
The identity of the claustrum as a part of cerebral cortex, and in particular of the adjacent insular cortex, has been investigated by connectivity features and patterns of gene expression. In the present paper, we mapped the cortical and claustral expression of several cortical genes in rodent and macaque monkey brains (nurr1, latexin, cux2, and netrinG2) to further assess shared features between cortex and claustrum. In mice, these genes were densely expressed in the claustrum, but very sparsely in the cortex and not present in the striatum.
View Article and Find Full Text PDFFront Neurosci
May 2014
Department of Developmental Physiology, National Institute for Physiological Sciences, National Institutes of Natural Sciences Okazaki, Japan ; Department of Physiological Sciences, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI) Hayama, Japan ; PRESTO, Japan Science and Technology Agency Kawaguchi, Japan.
Understanding the mechanisms of encoding forelimb kinematics in the activity of peripheral afferents is essential for developing a somatosensory neuroprosthesis. To investigate whether the spike timing of dorsal root ganglion (DRG) neurons could be estimated from the forelimb kinematics of behaving monkeys, we implanted two multi-electrode arrays chronically in the DRGs at the level of the cervical segments in two monkeys. Neuronal activity during voluntary reach-to-grasp movements were recorded simultaneously with the trajectories of hand/arm movements, which were tracked in three-dimensional space using a motion capture system.
View Article and Find Full Text PDFMethods Cell Biol
April 2015
Cellular Dynamics Laboratory, RIKEN, Wako, Saitama, Japan.
The regulation of nucleocytoplasmic transport is crucial not only for basic cellular activities but also for physiological adaptation to specific situation during the cell cycle, development, or stress. Although a wide variety of transport pathways have been identified in eukaryotic cells, the functional significance of their multiplicity remains unclear. The best-characterized nuclear transport receptors (NTRs) are the members of the importin β family (karyopherin, transportin) whose association with specific cargoes is regulated by the GTPase Ran.
View Article and Find Full Text PDFGenes Dev
May 2014
Department of Biosciences, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0033, Japan;
Daily behavioral rhythms in mammals are governed by the central circadian clock, located in the suprachiasmatic nucleus (SCN). The behavioral rhythms persist even in constant darkness, with a stable activity time due to coupling between two oscillators that determine the morning and evening activities. Accumulating evidence supports a prerequisite role for Ca(2+) in the robust oscillation of the SCN, yet the underlying molecular mechanism remains elusive.
View Article and Find Full Text PDFGenome Biol Evol
May 2014
Department of Biological Sciences, Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama, JapanFoundation for Advancement of International Science, Tsukuba, JapanDepartment of Life Sciences, National Cheng Kung University, Tainan, Taiwan
Fish use olfaction to detect a variety of nonvolatile chemical signals, and thus, this sense is key to survival and communication. However, the contribution of the olfactory sense to social-especially reproductive-interactions in cichlids is still controversial. To obtain insights into this issue, we investigated the genes encoding V1Rs-possible candidates for reproductive pheromone receptors-among East-African cichlids.
View Article and Find Full Text PDFPLoS One
June 2015
Research Center for Advanced Science and Technology, The University of Tokyo, Meguro-ku, Tokyo, Japan; Radioisotope Center, The University of Tokyo, Bunkyo-ku, Tokyo, Japan.
Statins exert atheroprotective effects through the induction of specific transcriptional factors in multiple organs. In endothelial cells, statin-dependent atheroprotective gene up-regulation is mediated by Kruppel-like factor (KLF) family transcription factors. To dissect the mechanism of gene regulation, we sought to determine molecular targets by performing microarray analyses of human umbilical vein endothelial cells (HUVECs) treated with pitavastatin, and KLF4 was determined to be the most highly induced gene.
View Article and Find Full Text PDFG3 (Bethesda)
May 2014
Department of Evolutionary Studies of Biosystems, the Graduate University for Advanced Studies (SOKENDAI), Hayama, Kanagawa 240-0193, Japan.
An extraordinary diversity of amino acid sequences in the peptide-binding region (PBR) of human leukocyte antigen [HLA; human major histocompatibility complex (MHC)] molecules has been maintained by balancing selection. The process of accumulation of amino acid diversity in the PBR for six HLA genes (HLA-A, B, C, DRB1, DQB1, and DPB1) shows that the number of amino acid substitutions in the PBR among alleles does not linearly correlate with the divergence time of alleles at the six HLA loci. At these loci, some pairs of alleles show significantly less nonsynonymous substitutions at the PBR than expected from the divergence time.
View Article and Find Full Text PDFPLoS One
January 2015
Department of Research and Development, Foundation for Advancement of International Science, Tsukuba, Japan.
The hypersonic effect is a phenomenon in which sounds containing significant quantities of non-stationary high-frequency components (HFCs) above the human audible range (max. 20 kHz) activate the midbrain and diencephalon and evoke various physiological, psychological and behavioral responses. Yet important issues remain unverified, especially the relationship existing between the frequency of HFCs and the emergence of the hypersonic effect.
View Article and Find Full Text PDFHeredity (Edinb)
November 2014
1] Transdisciplinary Research Integration Center, Research Organization of Information and Systems, Minato-ku, Tokyo, Japan [2] Mouse Genomics Resource Laboratory, National Institute of Genetics, Mishima, Shizuoka, Japan [3] Department of Genetics, The Graduate University for Advanced Studies (SOKENDAI), Mishima, Shizuoka, Japan.
Recent genetic studies have shown that genetic loci with significant effects in whole-genome quantitative trait loci (QTL) analyses were lost or weakened in congenic strains. Characterisation of the genetic basis of this attenuated QTL effect is important to our understanding of the genetic mechanisms of complex traits. We previously found that a consomic strain, B6-Chr6C(MSM), which carries chromosome 6 of a wild-derived strain MSM/Ms on the genetic background of C57BL/6J, exhibited lower home-cage activity than C57BL/6J.
View Article and Find Full Text PDFPLoS One
February 2015
Mouse Genomics Resource Laboratory, National Institute of Genetics (NIG), Mishima, Shizuoka, Japan; Department of Genetics, The Graduate University for Advanced Studies (SOKENDAI), Mishima, Shizuoka, Japan.
Aggressive behavior is widely observed throughout the animal kingdom because of its adaptiveness for social animals. However, when aggressive behavior exceeds the species-typical level, it is no longer adaptive, so there should be a mechanism to control excessive aggression to keep it within the adaptive range. Using optogenetics, we demonstrate that activation of excitatory neurons in the medial prefrontal cortex (mPFC), but not the orbitofrontal cortex (OFC), inhibits inter-male aggression in mice.
View Article and Find Full Text PDFJ Theor Biol
August 2014
Department of Evolutionary Studies of Biosystems, The Graduate University for Advanced Studies (SOKENDAI), Hayama, Kanagawa 240-0193, Japan.
Indirect reciprocity is a key mechanism for the evolution of human cooperation. Previous studies explored indirect reciprocity in the so-called donation game, a special class of Prisoner's Dilemma (PD) with unilateral decision making. A more general class of social dilemmas includes Snowdrift (SG), Stag Hunt (SH), and PD games, where two players perform actions simultaneously.
View Article and Find Full Text PDFPLoS Genet
April 2014
Division of Biological Science, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, Japan; Bioscience and Biotechnology Center, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, Japan.
Mechanisms generating diverse cell types from multipotent progenitors are crucial for normal development. Neural crest cells (NCCs) are multipotent stem cells that give rise to numerous cell-types, including pigment cells. Medaka has four types of NCC-derived pigment cells (xanthophores, leucophores, melanophores and iridophores), making medaka pigment cell development an excellent model for studying the mechanisms controlling specification of distinct cell types from a multipotent progenitor.
View Article and Find Full Text PDFPhilos Trans R Soc Lond B Biol Sci
May 2014
Department of Evolutionary Studies of Biosystems, School of Advanced Sciences, The Graduate University for Advanced Studies (SOKENDAI), , Shonan Village, Hayama, Kanagawa 240-0193, Japan.
One of the core concepts in social evolution theory is kin selection. Kin selection provides a perspective to understand how natural selection operates when genetically similar individuals are likely to interact. A family-structured population is an excellent example of this, where relatives are engaged in social interactions.
View Article and Find Full Text PDFFront Plant Sci
April 2014
Department of Botany, Graduate School of Science, Kyoto University Kyoto, Japan.
The endoplasmic reticulum (ER) forms highly organized network structures composed of tubules and cisternae. Many plant species develop additional ER-derived structures, most of which are specific for certain groups of species. In particular, a rod-shaped structure designated as the ER body is produced by plants of the Brassicales order, which includes Arabidopsis thaliana.
View Article and Find Full Text PDFCurr Opin Neurobiol
June 2014
Division of Cerebral Circuitry, National Institute for Physiological Sciences, Okazaki, Japan; Department of Physiological Science, The Graduate University for Advanced Studies (SOKENDAI), Okazaki, Japan; Japan Science and Technology Agency, Core Research for Evolutional Science and Technology, Tokyo, Japan. Electronic address:
The cerebral cortical microcircuit is composed of pyramidal and non-pyramidal cells and subcortical and cortico-cortical afferents. These constitute a complex wiring structure that remains poorly understood. At least ten non-pyramidal cell subtypes are known.
View Article and Find Full Text PDFJ Neurosci
March 2014
Departments of Ophthalmology and Save Sight Institute, Australian Research Council Centre of Excellence in Vision Science, and School of Medical Sciences, The University of Sydney, Sydney, NSW 2000, Australia, Department of Cell Physiology, National Institute for Physiological Sciences, Myodaiji, Okazaki, 444-8585, Japan, Department of Physiological Sciences, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI), Okazaki 444-8787, Japan, and Institute of Physiology, Medical School, University of Pécs, 7624 Pécs, Hungary.
Three well characterized pathways in primate vision (midget-parvocellular, parasol-magnocellular, bistratified-koniocellular) have been traced from the first synapse in the retina, through the visual thalamus (lateral geniculate nucleus, LGN), to the visual cortex. Here we identify a pathway from the first synapse in the retina to koniocellular layer K1 in marmoset monkeys (Callithrix jacchus). Particle-mediated gene transfer of an expression plasmid for the postsynaptic density 95-green fluorescent protein (PSD95-GFP) was used to label excitatory synapses on retinal ganglion cells and combined with immunofluorescence to identify the presynaptic bipolar cells.
View Article and Find Full Text PDFJ Neurosci
February 2014
Division of Sensory and Cognitive Information, National Institute for Physiological Sciences, Okazaki 444-8585, Japan, and Department of Physiological Sciences, The Graduate University for Advanced Studies (SOKENDAI), Okazaki 444-8585, Japan.
Information about the material from which objects are made provide rich and useful clues that enable us to categorize and identify those objects, know their state (e.g., ripeness of fruits), and properly act on them.
View Article and Find Full Text PDFJ Neurosci
January 2014
Department of Physiology, School of Medicine, Tokyo Women's Medical University, Tokyo 162-8666, Japan, Department of Physiological Sciences, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI), Okazaki 444-8787, Japan, Department of Information Physiology, National Institute for Physiological Sciences, Okazaki 444-8787, Japan, Faculty of Advanced Techno-Surgery, Institute of Advanced Biomedical Engineering and Science, Graduate School of Medicine, Tokyo Women's Medical University, Tokyo 162-8666, Japan, Research and Development Division, Pioneer Corporation, Kanagawa 212-0031, Japan, Department of Neurosurgery, School of Medicine, Tokyo Women's Medical University, Tokyo 162-8666, Japan, and Precursory Research for Embryonic Science and Technology, Japan Science and Technology Agency, Saitama 332-0012, Japan.
Functional synapse elimination and strengthening are crucial developmental processes in the formation of precise neuronal circuits in the somatosensory system, but the underlying alterations in topographical organization are not yet fully understood. To address this issue, we generated transgenic mice in which afferent fibers originating from the whisker-related brain region, called the maxillary principal trigeminal nucleus (PrV2), were selectively visualized with genetically expressed fluorescent protein. We found that functional synapse elimination drove and established large-scale somatotopic refinement even after the thalamic barreloid architecture was formed.
View Article and Find Full Text PDFCell Rep
January 2014
Department of Molecular Cell Biology, Graduate School of Experimental Plant Sciences, VU University, De Boelelaan 1085, 1081HV Amsterdam, the Netherlands. Electronic address:
The acidification of endomembrane compartments is essential for enzyme activities, sorting, trafficking, and trans-membrane transport of various compounds. Vacuoles are mildly acidic in most plant cells because of the action of V-ATPase and/or pyrophosphatase proton pumps but are hyperacidified in specific cells by mechanisms that remained unclear. Here, we show that the blue petal color of petunia ph mutants is due to a failure to hyperacidify vacuoles.
View Article and Find Full Text PDFPain
March 2014
Department of Information Physiology, National Institutes for Physiological Sciences, Okazaki, Japan Department of Anesthesiology, Osaka City University Graduate School of Medicine, Osaka, Japan School of Physiology and Pharmacology, University of Bristol, Bristol, UK School of Life Science, The Graduate University for Advanced Studies (SOKENDAI), Okazaki, Japan.
α2-Adrenoceptors are widely distributed throughout the central nervous system (CNS) and the systemic administration of α2-agonists such as dexmedetomidine produces clinically useful, centrally mediated sedation and analgesia; however, these same actions also limit the utility of these agents (ie, unwanted sedative actions). Despite a wealth of data on cellular and synaptic actions of α2-agonists in vitro, it is not known which neuronal circuits are modulated in vivo to produce the analgesic effect. To address this issue, we made in vivo recordings of membrane currents and synaptic activities in superficial spinal dorsal horn neurons and examined their responses to systemic dexmedetomidine.
View Article and Find Full Text PDFWe developed a certified reference material of brown rice to measure radioactivity from the Fukushima Daiichi Nuclear Power Plant accident. The rice was planted in the spring of 2011, just after the Fukushima accident occurred, and it was harvested in the autumn of 2011. The certified value of radioactivity concentration in the rice was 33.
View Article and Find Full Text PDFJ Neurosci
December 2013
Division of Brain Biology, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan, Division of Genetic Therapeutics, Center for Molecular Medicine, Jichi Medical University, Shimotsuke, Tochigi 329-0498, Japan, Department of Developmental Physiology, National Institute for Physiological Sciences, Okazaki, Aichi 444-8585, Japan, and The Graduate University for Advanced Studies (Sokendai), Hayama, Kanagawa 240-0193, Japan.
Distinct anatomical regions of the neocortex subserve different sensory modalities and neuronal integration functions, but mechanisms for these regional specializations remain elusive. Involvement of epigenetic mechanisms for such specialization through the spatiotemporal regulation of gene expression is an intriguing possibility. Here we examined whether epigenetic mechanisms might play a role in the selective gene expression in the association areas (AAs) and the primary visual cortex (V1) in macaque neocortex.
View Article and Find Full Text PDFJ Theor Biol
February 2014
Department of Evolutionary Studies of Biosystems (Sokendai-Hayama), The Graduate University for Advanced Studies (Sokendai), Hayama, Kanagawa 240-0193, Japan; Evolution and Ecology Program, International Institute for Applied Systems Analysis (IIASA), A-2361 Laxenburg, Austria.
We develop a star-network of connections between a central city and peripheral villages and analyze the epidemic dynamics of a vector-borne disease as influenced by daily commuters. We obtain an analytical solution for the global basic reproductive number R0 and investigate its dependence on key parameters for disease control. We find that in a star-network topology the central hub is not always the best place to focus disease intervention strategies.
View Article and Find Full Text PDFPhysiol Rep
October 2013
Division of Biophysics and Neurobiology, Department of Molecular Physiology, National Institute for Physiological Sciences Myodaiji, Okazaki, 444-8585, Aichi, Japan ; Department of Physiological Sciences, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI) Myodaiji, Okazaki, 444-8585, Aichi, Japan.
G protein-coupled receptors (GPCRs) cause various cellular responses through activating heterotrimeric G protein upon the agonist binding. The interaction with G protein has been suggested to stabilize the agonist-bound active conformation of GPCRs. We previously reported the effects of Gq protein on the stabilization of the active conformation of the muscarinic receptor type 1 (M1R), using a fluorescence resonance energy transfer (FRET) technique.
View Article and Find Full Text PDFDev Cell
November 2013
Department of Molecular Genetics, National Institute of Genetics and The Graduate University for Advanced Studies (SOKENDAI), Mishima, Shizuoka 411-8540, Japan. Electronic address:
Speciation accompanies reproductive isolation in natural populations through hybrid sterility or lethality. However, the molecular bases of hybrid lethality are mysterious. In this issue of Developmental Cell, Thomae et al.
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