398 results match your criteria: "and Institute of Molecular Biology[Affiliation]"

Sjögren's syndrome (SS) is a prevalent systemic autoimmune disease with substantial impacts on women's health worldwide. Although oral Haemophilus parainfluenzae is reduced in SS, its significance remains unclear. This study aimed to elucidate the pathophysiological role of H.

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Unravelling molecular mechanisms in atherosclerosis using cellular models and omics technologies.

Vascul Pharmacol

December 2024

Centre for Cardiovascular Science, Queens Medical Research Institute, University of Edinburgh, Edinburgh, United Kingdom. Electronic address:

Despite the discovery and prevalent clinical use of potent lipid-lowering therapies, including statins and PCSK9 inhibitors, cardiovascular diseases (CVD) caused by atherosclerosis remain a large unmet clinical need, accounting for frequent deaths worldwide. The pathogenesis of atherosclerosis is a complex process underlying the presence of modifiable and non-modifiable risk factors affecting several cell types including endothelial cells (ECs), monocytes/macrophages, smooth muscle cells (SMCs) and T cells. Heterogeneous composition of the plaque and its morphology could lead to rupture or erosion causing thrombosis, even a sudden death.

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Olaparib enhancing radiosensitization and anti-metastatic effect of oral cancer by targeting IL-17A signal.

Cancer Cell Int

November 2024

Department of Radiation Oncology, Dalin Tzu Chi Hospital, Buddhist Tzu Chi Medical Foundation, NO2. Min-Sheng Road, Dalin Town, Chia-Yi, Chia-Yi, 62247, Taiwan.

Purpose: We tested whether the PARP inhibitor, Olaparib, can effectively enhance radiosensitivity while inhibiting OSCC growth and metastasis in vitro and in vivo. Patient samples were used for survival validation.

Methods: The present study investigated the effect of Olaparib and ionizing radiation (IR) on clonogenic, migratory, and invasive ability in human IR-sensitive (OML1) and IR-resistant (OML1-R) OSCC cell lines.

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Exploring the Reactivity of Electrophilic Organic Carbonates and Thiocarbonates as Vehicles to Convert Hydrosulfide into COS and CS.

J Org Chem

November 2024

Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1253, United States.

Article Synopsis
  • Hydrogen sulfide (HS) and other reactive sulfur compounds play a significant role in biological processes.
  • Carbonyl sulfide (COS) and carbon disulfide (CS) may also be sources of reduced sulfur, along with common reactive sulfur species.
  • The study shows that HS can be transformed into COS and CS through reactions with certain organic compounds known as carbonate and thiocarbonate electrophiles.
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Structural Deformations in Cucurbit[n]urils: Analysis, Host-Guest Dependence, and Automated Ellipticity Measurements Using ElliptiCB[n].

Chemistry

October 2024

Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-1253, United States.

Cucurbit[n]urils (CB[n]s) are cyclic macrocycles with rich host-guest chemistry. In many cases, guest binding in CB[n]s results in host structural deformations. Unfortunately, measuring such deformations remains a major challenge, with only a handful of manual estimations reported in the literature.

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Synthesis, Characterization, and Reactivity of a Synthetic End-On Cobalt(II) Alkyl Persulfide Complex as a Model Platform for Thiolate Persulfidation.

J Am Chem Soc

August 2024

Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1253, United States.

Persulfides (RSS) are ubiquitous source of sulfides (S) in biology, and interactions between RSS and bioinorganic metal centers play critical roles in biological hydrogen sulfide (HS) biogenesis, signaling, and catabolism. Here, we report the use of contact-ion stabilized [Na(15-crown-5)][BuSS] () as a simple synthon to access rare metal alkyl persulfide complexes and to investigate the reactivity of RSS with transition metal centers to provide insights into metal thiolate persulfidation, including the fundamental difference between alkyl persulfides and alkyl thiolates. Reaction of with [Co(TPA)(OTf)] afforded the η-alkyl persulfide complex [Co(TPA)(SSBu)] (), which was characterized by X-ray crystallography, UV-vis spectroscopy, and Raman spectroscopy.

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Activity-Based Fluorescent Probes for Hydrogen Sulfide and Related Reactive Sulfur Species.

Chem Rev

April 2024

Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1253, United States.

Hydrogen sulfide (HS) is not only a well-established toxic gas but also an important small molecule bioregulator in all kingdoms of life. In contemporary biology, HS is often classified as a "gasotransmitter," meaning that it is an endogenously produced membrane permeable gas that carries out essential cellular processes. Fluorescent probes for HS and related reactive sulfur species (RSS) detection provide an important cornerstone for investigating the multifaceted roles of these important small molecules in complex biological systems.

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Background And Aims: Metabolic dysfunction-associated steatotic liver disease (MASLD) encompasses a broad and continuous spectrum of liver diseases ranging from fatty liver to steatohepatitis. The intricate interactions of genetic, epigenetic, and environmental factors in the development and progression of MASLD remain elusive. Here, we aimed to achieve an integrative understanding of the genomic and transcriptomic alterations throughout the progression of MASLD.

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Background/aims: Metabolic dysfunction-associated steatotic liver disease (MASLD) is characterized by fat accumulation in the liver. MASLD encompasses both steatosis and MASH. Since MASH can lead to cirrhosis and liver cancer, steatosis and MASH must be distinguished during patient treatment.

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Background: Lung cancers are common worldwide. First-line targeted therapy and chemotherapy are both standard treatments in the current guidelines. With the development of new anticancer therapy, the lifespan of patients with late-stage lung cancer has increased.

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Protein aggregates arise naturally under normal physiological conditions, but their formation is accelerated by age or stress-induced protein misfolding. When the stressful event dissolves, these aggregates are removed by mechanisms, such as aggrephagy, chaperone-mediated autophagy, refolding attempts, or the proteasome. It was recently shown that mitochondria in yeast cells may support these primarily cytosolic processes.

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The association between cardiac and kidney dysfunction has received attention over the past two decades. A putatively unique syndrome, the cardiorenal syndrome, distinguishing five subtypes on the basis of the chronology of cardiac and kidney events, has been widely adopted. This review discusses the methodologic and practical problems inherent to the current classification of cardiorenal syndrome.

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Advances and Opportunities in HS Measurement in Chemical Biology.

JACS Au

October 2023

Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1253, United States.

Hydrogen sulfide (HS) is an important biological mediator across all kingdoms of life and plays intertwined roles in various disciplines, ranging from geochemical cycles to industrial processes. A common need across these broad disciplines is the ability to detect and measure HS in complex sample environments. This Perspective focuses on key advances and opportunities for HS detection and quantification that are relevant to chemical biology.

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The role of myelination for axonal conduction is well-established in projection neurons but little is known about its significance in GABAergic interneurons. Myelination is discontinuous along interneuron axons and the mechanisms controlling myelin patterning and segregation of ion channels at the nodes of Ranvier have not been elucidated. Protein 4.

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Distinct long-term disease activity trajectories differentiate early on treatment with etanercept in both rheumatoid arthritis and spondylarthritis patients: a prospective cohort study.

Rheumatol Int

February 2024

Laboratory of Rheumatology, Autoimmunity and Inflammation, Medical School, University of Crete, Heraklion, Greece and Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology Hellas (FORTH), Heraklion, Greece.

To characterize disease activity trajectories and compare long-term drug retention between rheumatoid (RA) and spondylarthritis (SpA) patients initiating tumor necrosis factor inhibitor (TNFi) treatment (etanercept). Prospective observational study of RA, axial (AxSpA) and peripheral SpA (PerSpA) patients initiating etanercept during 2004-2020. Kaplan-Meier plots were used for drug retention comparisons and multivariable Cox regression models for predictors of discontinuation.

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The human malaria vector is becoming increasingly resistant to insecticides, spurring the development of genetic control strategies. CRISPR-Cas9 gene drives can modify a population by creating double-stranded breaks at highly specific targets, triggering copying of the gene drive into the cut site ("homing"), ensuring its inheritance. The DNA repair mechanism responsible requires homology between the donor and recipient chromosomes, presenting challenges for the invasion of laboratory-developed gene drives into wild populations of target species species complex, which show high levels of genome variation.

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Article Synopsis
  • * The study identifies the cell surface protein Lrig1 as a key factor in enhancing the suppressive abilities of Tregs, particularly in T helper (Th) 17 cells.
  • * Lrig1 deficiency leads to weakened suppressive functions but does not stop the differentiation of naïve T cells; targeting Lrig1 could be a potential therapeutic strategy for autoimmune diseases, as shown by improved outcomes in mouse models.
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Understanding Reactive Sulfur Species through P/S Synergy.

Inorg Chem

August 2023

Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impart, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-1253, United States.

We investigated the differential oxidative and nucleophilic chemistry of reactive sulfur and oxygen anions (SSNO, SNO, NO, S, and HS) using the simple reducing electrophile PPhCl. In the case of SSNO reacting with PPhCl, a complex mixture of mono and diphosphorus products is formed exclusively in the P(V) oxidation state. We found that the phosphine stoichiometry dictates selectivity for oxidation to P=S/P=O products or transformation to P species.

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The Aging Enteric Nervous System.

Int J Mol Sci

May 2023

Department of Psychiatry and Psychotherapy, University Medical Center Mainz, 55131 Mainz, Germany.

The gut and the brain communicate via the nervous system, hormones, microbiota-mediated substances, and the immune system. These intricate interactions have led to the term "gut-brain axis". Unlike the brain-which is somewhat protected-the gut is exposed to a variety of factors throughout life and, consequently, might be either more vulnerable or better adapted to respond to these challenges.

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Taming the Dichalcogenides: Isolation, Characterization, and Reactivity of Elusive Perselenide, Persulfide, Thioselenide, and Selenosulfide Anions.

J Am Chem Soc

June 2023

Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon 97403-1253, United States.

Reactive sulfur species (RSS) and reactive selenium species (RSeS) play integral roles in hydrogen sulfide (HS) and hydrogen selenide (HSe) biological signaling pathways, and dichalcogenide anions are proposed transient intermediates that facilitate a variety of biochemical transformations. Herein we report the selective synthesis, isolation, spectroscopic and structural characterization, and fundamental reactivity of persulfide (RSS), perselenide (RSeSe), thioselenide (RSSe), and selenosulfide (RSeS) anions. The isolated chalcogenides do not rely on steric protection for stability and have steric profiles analogous to cysteine (Cys).

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Solubilization of elemental sulfur by surfactants promotes reduction to HS by thiols.

Chem Commun (Camb)

May 2023

Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, 97403-12532, USA.

Elemental sulfur (S) may contribute to sulfane sulfur (S) storage in biological systems. We demonstrate that surfactants can solubilize S in water and promote S reduction to HS by thiols. Moreover, anionic and cationic surfactants interact differently with intermediate S carriers, highlighting how specific hydrophobic microenvironments impact reactive sulfur species.

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Defective N-glycosylation in tumor-infiltrating CD8 T cells impairs IFN-γ-mediated effector function.

Immunol Cell Biol

August 2023

School of Biological Sciences and Institute of Molecular Biology and Genetics, Seoul National University, Seoul, Republic of Korea.

Article Synopsis
  • The study examines how N-glycosylation affects T cell function, specifically focusing on exhausted CD8 T cells in a mouse model of colon cancer.
  • Researchers discovered that exhausted T cells reduce levels of the oligosaccharyltransferase complex critical for N-glycan transfer, leading to a decline in their antitumor activity.
  • By restoring this complex, they were able to enhance IFN-γ production and reduce CD8 T cell exhaustion, suggesting that modifying glycosylation could be a potential strategy for cancer immunotherapy.
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Article Synopsis
  • Parkinson's disease (PD) is a progressive neurodegenerative disorder, and understanding how different cell types contribute to its mechanisms is still a challenge.
  • Researchers analyzed over 113,000 nuclei from the substantia nigra in both healthy individuals and PD patients, revealing important changes in gene regulation specific to different cell types.
  • The study identified dysregulated regulatory elements and 656 target genes connected to PD, emphasizing unique expression patterns in cells like dopaminergic neurons and glial cells, which are crucial for understanding PD's development.
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Innate Immunity System in Patients With Cardiovascular and Kidney Disease.

Circ Res

April 2023

Division of Nephrology and Transplantation, Grande Ospedale Metropolitano, Reggio Calabria, Italy and National Research Council (CNR), Clinical Epidemiology of Hypertension and Renal Diseases Unit of the Institute of Clinical Physiology, Reggio Calabria, Italy (F.M.).

With a global burden of 844 million, chronic kidney disease (CKD) is now considered a public health priority. Cardiovascular risk is pervasive in this population, and low-grade systemic inflammation is an established driver of adverse cardiovascular outcomes in these patients. Accelerated cellular senescence, gut microbiota-dependent immune activation, posttranslational lipoprotein modifications, neuroimmune interactions, osmotic and nonosmotic sodium accumulation, acute kidney injury, and precipitation of crystals in the kidney and the vascular system all concur in determining the unique severity of inflammation in CKD.

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