14,646 results match your criteria: "a Graduate School of Life and Environmental Sciences; Kyoto Prefectural University ; Kyoto[Affiliation]"

Floodplain forests drive fruit-eating fish diversity at the Amazon Basin-scale.

Proc Natl Acad Sci U S A

January 2025

Centre de Recherche sur la Biodiversité et l'Environnement, Université de Toulouse, Institut de Recherche pour le Développement, Institut National Polytechnique de Toulouse, Université Toulouse 3 - Paul Sabatier, Toulouse F-31062, France.

Unlike most rivers globally, nearly all lowland Amazonian rivers have unregulated flow, supporting seasonally flooded floodplain forests. Floodplain forests harbor a unique tree species assemblage adapted to flooding and specialized fauna, including fruit-eating fish that migrate seasonally into floodplains, favoring expansive floodplain areas. Frugivorous fish are forest-dependent fauna critical to forest regeneration via seed dispersal and support commercial and artisanal fisheries.

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Small, obligately anaerobic strains 13CB8C, 13CB11C, 13CB18C and 13GAM1G were isolated from a faecal sample in a patient with Parkinson's disease with a history of duodenal resection. After conducting a comprehensive polyphasic taxonomic analysis including genomic analysis, we propose the establishment of one new genus and four new species. The novel bacteria are sp.

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Identification of pennaceous barbule cell factor (PBCF), a novel gene with spatiotemporal expression in barbule cells during feather development.

Gene

January 2025

Graduate School of Natural Science and Technology, Okayama University, 3-1-1 Kitaku, Tsushimanaka, Okayama 700-8530, Japan; Graduate School of Environmental, Life, Natural Science and Technology, Okayama University, 3-1-1 Kitaku, Tsushimanaka, Okayama 700-8530, Japan. Electronic address:

Bird contour feathers exhibit a complex hierarchical structure composed of a rachis, barbs, and barbules, with barbules playing a crucial role in maintaining feather structure and function. Understanding the molecular mechanisms underlying barbule formation is essential for advancing our knowledge of avian biology and evolution. In this study, we identified a novel gene, pennaceous barbule cell factor (PBCF), using microarray analysis, RT-PCR, and in situ hybridization.

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Pollen tube-expressed RUPO forms a complex with OsMTD2 and OsRALF17 and OsRALF19 peptides in rice (Oryza sativa).

J Plant Physiol

January 2025

Department of Life Science and Environmental Biochemistry, and Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, Republic of Korea. Electronic address:

Pollen tubes are crucial for angiosperm plants, as they deliver sperm gametes for the essential process of double fertilization. Understanding the molecular mechanisms behind pollen tube germination and growth is critical; however, these processes remain partially elucidated in monocot cereal crops. Rapid Alkalinization Factor (RALF), a small peptide of about 5 kDa, binds to the CrRLK1L receptor and plays a role in various plant physiological processes, including reproduction and tip growth.

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Photocatalytic production and biological activity of D-arabino-1,4-lactone from D-fructose.

Sci Rep

January 2025

Graduate School of Bio-Applications and Systems Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo, 184-0012, Japan.

Lactones play crucial roles in various fields, such as pharmaceuticals, food, and materials science, due to their unique structures and diverse biological activities. However, certain lactones are difficult to obtain in large quantities from natural sources, necessitating their synthesis to study their properties and potential. In this study, we investigated the photocatalytic conversion of D-fructose, a biomass-derived and naturally abundant sugar, using a TiO photocatalyst under light irradiation in ambient conditions.

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Ionizing radiation induces various types of DNA damage, and the reparability and lethal effects of DNA damage differ depending on its spatial density. Elucidating the structure of radiation-induced clustered DNA damage and its repair processes will enhance our understanding of the lethal impact of ionizing radiation and advance progress toward precise therapeutics. Previously, we developed a method to directly visualize DNA damage using atomic force microscopy (AFM) and classified clustered DNA damage into simple base damage clusters (BDCs), complex BDCs and complex double-strand breaks (DSBs).

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Review on mushroom mycelium-based products and their production process: from upstream to downstream.

Bioresour Bioprocess

January 2025

Laboratory of Forest Biochemistry, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.

The global trend toward carbon neutrality and sustainability calls for collaborative efforts in both the basic and applied research sectors to utilize mushroom mycelia as environmentally friendly and sustainable materials. Fungi, along with animals and plants, are one of the major eukaryotic life forms. They have long been utilized in traditional biotechnology sectors, such as food fermentation, antibiotic production, and industrial enzyme production.

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Migration routes and the depth patterns of anguillid eel larvae migrating long distances from spawning grounds in the ocean remain poorly understood. We used otolith stable isotope analysis to study the oceanic migrations of anguillid eels by reconstructing experienced water temperature histories of larvae. The otolith stable oxygen isotopes (δO) of recruited Anguilla japonica glass eels were analyzed to assess the relationship with the experienced water temperature of the early larval stage in laboratory experiments.

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Designer topological-single-atom catalysts with site-specific selectivity.

Nat Commun

January 2025

School of Materials Science and Engineering, Peking University, Beijing, P.R. China.

Designing catalysts with well-defined, identical sites that achieve site-specific selectivity, and activity remains a significant challenge. In this work, we introduce a design principle of topological-single-atom catalysts (T-SACs) guided by density functional theory (DFT) and Ab initio molecular dynamics (AIMD) calculations, where metal single atoms are arranged in asymmetric configurations that electronic shield topologically misorients d orbitals, minimizing unwanted interactions between reactants and the support surface. Mn/CeO catalysts, synthesized via a charge-transfer-driven approach, demonstrate superior catalytic activity and selectivity for NO removal.

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Rational design of redox active metal organic frameworks for mediated electron transfer of enzymes.

Mater Horiz

January 2025

Department of Material Sciences, Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1, Tennodai, Ibaraki 305-5358, Japan.

The efficient immobilization of redox mediators remains a major challenge in the design of mediated enzyme electrode platforms. In addition to stability, the ability of the redox-active material to mediate electron transfer from the active-site buried enzymes, such as flavin adenine dinucleotide-dependent glucose dehydrogenase (FADGDH) and lactate oxidase (LOx), is also crucial. Conventional immobilization techniques can be synthetically challenging, and immobilized mediators often exhibit limited durability, particularly in continuous operation.

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This study discusses disseminated intravascular coagulation (DIC) associated with solid cancers and various vascular abnormalities, both of which generally exhibit chronic DIC patterns. Solid cancers are among the most significant underlying diseases that induce DIC. However, the severity, bleeding tendency, and progression of DIC vary considerably depending on the type and stage of the cancer, making generalization difficult.

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Recent molecular phylogenetic studies have raised two questions about the evolutionary history of the calcified exoskeleton of mollusks. The first question concerns the homology of the two types of skeleton: whether spicules and shell plates share an evolutionary origin. The second question is the homology of the shell plates between chitons and other mollusks, including gastropods and bivalves.

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Purpose: Flotation methods are widely used to detect oocysts/cysts of protozoans and eggs of helminths, except trematodes. However, details regarding the concentration and recovery rates of these parasites are poorly understood.

Methods: Using Eimeria tenella oocysts as a model parasite, the present study evaluated three check points: (1) the proportion of parasites that remain floating in flotation solution (sucrose or saturated saline) during centrifugation, (2) the proportion of oocysts that naturally float after addition of flotation solution after centrifugation, and (3) the rate of recovery on cover slips after completion of the flotation protocol.

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For the development of new functional materials for various applications, such as drug or gene delivery and environmental remediation, the relationship between function and morphology has been considered an important aspect for controlling affinity to the targets. However, there are only a few reports on this relationship because the molecular strategy for the precise control of vesicle shape has been restricted. Herein, we report the photocontrol of vesicle shape using azobenzene-containing amphiphilic switches.

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vClean: assessing virus sequence contamination in viral genomes.

NAR Genom Bioinform

March 2025

Department of Life Science and Medical Bioscience, Graduate School of Advanced Science and Engineering, Waseda University, 2-2 Wakamatsu-cho, Shinjuku-ku, Tokyo 162-8480, Japan.

Recent advancements in viral metagenomics and single-virus genomics have improved our ability to obtain the draft genomes of environmental viruses. However, these methods can introduce virus sequence contaminations into viral genomes when short, fragmented partial sequences are present in the assembled contigs. These contaminations can lead to incorrect analyses; however, practical detection tools are lacking.

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In the present study, the rare true bug (Schaefer & Ashlock, 1970), (Hemiptera, Heteroptera, Pentatomomorpha, Pentatomoidea, Saileriolidae), which is endemic to Vietnam, is redescribed and transferred from the genus China & Slater, 1956 to the genus Hsiao, 1964 based on morphological characteristics. Adults and nymphs of this species congregate in groups of several individuals and suck sap from the abaxial side of the leaves of sp. (Lauraceae).

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Freshwater ecosystems are highly biodiverse and important for livelihoods and economic development, but are under substantial stress. To date, comprehensive global assessments of extinction risk have not included any speciose groups primarily living in freshwaters. Consequently, data from predominantly terrestrial tetrapods are used to guide environmental policy and conservation prioritization, whereas recent proposals for target setting in freshwaters use abiotic factors.

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Article Synopsis
  • The study emphasizes the significance of nickel, copper, and selenium as essential biometals in various industries, but highlights their harmful impact as environmental pollutants when they exceed normal levels, particularly in aquatic ecosystems.
  • Research on medaka fish embryos revealed that exposure to these biometals led to significant developmental abnormalities and increased mortality rates throughout a 14-day observation period.
  • Gene expression analysis showed that copper was the most toxic, affecting over 4,700 genes, while all three biometals caused detrimental effects on fish embryo development, underscoring the necessity of monitoring biometal levels to protect aquatic life.
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Background: The pancreas exhibits diverse structures and roles across vertebrates. The pancreas has evolved to include both endocrine and exocrine cells, a change that occurred during the transition from fish to amphibian. This event emphasizes the evolutionary significance of amphibians.

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Mosquito-borne diseases affect millions and cause numerous deaths annually. Effective vector control, which hinges on understanding their dispersal, is vital for reducing infection rates. Given the variability in study results, likely due to environmental and human factors, gathering local dispersal data is critical for targeted disease control.

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A Self-Phase Separated Electrolyte toward Durable and Rollover-Stable Zinc Metal Batteries.

J Am Chem Soc

January 2025

Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen 518055, China.

Aqueous zinc (Zn) metal batteries (ZMBs) have received great attention due to their safety and environmental friendliness. Although aqueous electrolytes facilitate fast kinetics in metal oxide cathodes, their incompatibility with the Zn metal anodes triggers severe hydrogen evolution reaction (HER) and dendrite growth. Herein, a self-phase separated electrolyte (SPSE) is proposed to fulfill the contradictory requirements of the anode and cathode in ZMBs.

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With the decreasing and aging agricultural workforce, fruit harvesting robots equipped with higher degrees of freedom (DoF) manipulators are seen as a promising solution for performing harvesting operations in unstructured and complex orchard environments. In such a complex environment, guiding the end-effector from its starting position to the target fruit while avoiding obstacles poses a significant challenge for path planning in automatic harvesting. However, existing studies often rely on manually constructed environmental map models and face limitations in planning efficiency and computational cost.

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Global warming and extreme climate conditions caused by unsuitable temperature and humidity lead to coffee leaf rust () diseases in coffee plantations. Coffee leaf rust is a severe problem that reduces productivity. Currently, pesticide spraying is considered the most effective solution for mitigating coffee leaf rust.

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Response of to Flooding with Physical Flow.

Plants (Basel)

December 2024

Department of Materials and Life Sciences, Faculty of Science and Technology, Sophia University, Chiyoda, Tokyo 102-8554, Japan.

Flooding causes severe yield losses worldwide, making it urgent to enhance crop tolerance to this stress. Since natural flooding often involves physical flow, we hypothesized that the effects of submergence on plants could change when combined with physical flow. In this study, we analyzed the growth and transcriptome of exposed to submergence or flooding with physical flow.

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Hydroxylated-Benz[a]anthracenes Induce Two Apoptosis-Related Gene Expressions in the Liver of the Nibbler Fish .

Toxics

December 2024

Noto Marine Laboratory, Institute of Nature and Environmental Technology, Kanazawa University, Ogi, Noto-cho, Ishikawa 927-0553, Japan.

Polycyclic aromatic hydrocarbons (PAHs) are known to have toxic effects on fish. In this study, we examined the effects of benz[a]anthracene (BaA), a type of PAH, on fish liver metabolism. Nibbler fish () were intraperitoneally injected with BaA (10 ng/g body weight) four times over a 10-day period.

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