1,032 results match your criteria: "a Fraunhofer Institute for Molecular Biology and Applied Ecology IME; Muenster[Affiliation]"

Dextran sulfate sodium is used in inflammatory bowel disease (IBD) mice models to trigger chronic intestinal inflammation. In this study, we have analyzed DSS effects in the genetic model and pest beetle, Tribolium castaneum, which can be easily and cost-effectively cultivated and examined in very large quantities compensating for individual variations. We fed the larvae with DSS and uracil, which is known to induce the production of reactive oxygen species by activating DUOX, a member of the NADPH oxidase family.

View Article and Find Full Text PDF

Tebuconazole is a widely used fungicide for various crops that targets sterol 14-α-demethylase (CYP51) in fungi. However, attention has shifted to aromatase (CYP19) due to limited research indicating its reproductive impact on aquatic organisms. Herein, zebrafish were exposed to 0.

View Article and Find Full Text PDF

Although numerous studies imply a correlation between chemical contamination and an impaired immunocompetence of wildlife populations, the assessment of immunomodulatory modes of action is currently not covered in the regulatory requirements for the approval of new substances. This is not least due to the complexity of the immune system and a lack of standardised methods and validated biomarkers. To tackle this issue, in this study, the transcriptomic profiles of zebrafish embryos were analysed in response to the immunosuppressive compound clobetasol propionate, a synthetic glucocorticoid, and/or the immunostimulatory compound imiquimod (IMQ), a TLR-7 agonist.

View Article and Find Full Text PDF

Introduction: Plant growth and greening in response to light require the synthesis of photosynthetic pigments such as chlorophylls and carotenoids, which are derived from isoprenoid precursors. In , the pseudo-etiolated-in-light phenotype is caused by the overexpression of (), which regulates chlorophyll synthesis and photosynthetic genes.

Methods: We investigated a homologous protein in the Russian dandelion () to determine its influence on the rich isoprenoid network in this species, using a combination of analysis, gene overexpression, transcriptomics and metabolic profiling.

View Article and Find Full Text PDF

Unveiling the secrets of adeno-associated virus: novel high-throughput approaches for the quantification of multiple serotypes.

Mol Ther Methods Clin Dev

December 2023

Lab Essentials Applications Development, Sartorius Lab Instruments GmbH & Co. KG, Otto-Brenner-Straße 20, 37079 Göttingen, Germany.

Adeno-associated virus (AAV) vectors are among the most prominent viral vectors for gene therapy, and their investigation and development using high-throughput techniques have gained increasing interest. However, sample throughput remains a bottleneck in most analytical assays. In this study, we compared commonly used analytical methods for AAV genome titer, capsid titer, and transducing titer determination with advanced methods using AAV2, AAV5, and AAV8 as representative examples.

View Article and Find Full Text PDF

Production of enzymes for the removal of odorous substances in plant biomass.

Protein Expr Purif

February 2024

Institute for Molecular Biotechnology, Worringerweg 1, RWTH Aachen University, 52074, Aachen, Germany; Institute of Bioprocess Science and Engineering (IBSE), Department of Biotechnology (DBT), University of Natural Resources and Life Sciences (BOKU), Muthgasse 18, A-1190, Vienna, Austria. Electronic address:

Residual plant biomass collected from agricultural, technical or biopharmaceutical processes contains odorous substances. The latter are often unacceptable for customers if the biomass is used in sustainable products such as building materials, paints, glues or flame-resistant foils. The objective of this study was to identify enzymes that can prevent the formation or facilitate the degradation of odorous substances such as butanol, eugenol or ethyl acetate and their derivatives in residual biomass.

View Article and Find Full Text PDF

Optimization and validation of analytical affinity chromatography for the in-process monitoring and quantification of peptides containing a C-tag.

J Chromatogr B Analyt Technol Biomed Life Sci

September 2023

Institute of Bioprocess Engineering and Pharmaceutical Technology, University of Applied Sciences Mittelhessen (THM), Wiesenstr. 14, 35390 Giessen, Germany; Fraunhofer Institute for Molecular Biology and Applied Ecology (IME), Ohlebergsweg 12, 35392 Giessen, Germany. Electronic address:

Antimicrobial peptides and proteins (AMPs) are promising alternatives to conventional antibiotics for the treatment of infections caused by multidrug-resistant bacteria. The production of recombinant AMPs is facilitated by platform technologies such as the C-tag, a sequence of four C-terminal amino acids that allows immunoaffinity capture and purification. However, the detection and quantification of such products throughout the manufacturing process is a significant challenge.

View Article and Find Full Text PDF

Process intensification for the production of a C-tagged antimicrobial peptide in Escherichia coli - First steps toward a platform technology.

J Biosci Bioeng

November 2023

Institute of Bioprocess Engineering and Pharmaceutical Technology, University of Applied Sciences Mittelhessen (THM), Wiesenstr. 14, 35390 Giessen, Germany; Fraunhofer Institute for Molecular Biology and Applied Ecology (IME), Ohlebergsweg 12, 35392 Giessen, Germany. Electronic address:

The production of antimicrobial peptides/proteins (AMPs) in sufficient quantities for clinical evaluation is challenging because complex peptides are unsuitable for chemical synthesis, natural sources have low yields, and heterologous systems often have low expression levels or require product-specific process adaptations. Here we describe the production of a complex AMP, the insect metalloproteinase inhibitor (IMPI), by adding a C-terminal C-tag to increase the yield compared to the unmodified peptide. We used a design of experiments approach for process intensification in Escherichia coli Rosetta-gami 2(DE3)pLysS cells and achieved a yield of 260 mg L, which is up to 30-fold higher than previously reported.

View Article and Find Full Text PDF

Hemodialysis patients faced an excess morbidity and mortality during the COVID-19 pandemic. We evaluated the effect of second-generation mRNA vaccines against Omicron BA.4 and BA.

View Article and Find Full Text PDF

There is a lack of knowledge about the fate and impact of microplastics (MPs) and nanoplastics (NPs), as well as their potential uptake and impact on plants and microorganisms. The predicted environmental concentrations (PEC) of frequent polymers in soils are low, and therefore, difficult to detect with the available techniques, which explains the knowledge gaps. Therefore, model particles (polystyrene particles (PS-P), 343 nm) and palladium (Pd) nanoparticle-doped polystyrene particles (PS-Pd-PS-P, 442 nm) were synthesized, characterized, and subsequently applied to agricultural soils (Cambisol, Podzol, PS target contents: 25 mg kg, 75 mg kg, 225 mg kg).

View Article and Find Full Text PDF

Functional in vitro and in vivo analysis of biosynthetic genes by heterologous expression in E. coli.

STAR Protoc

September 2023

Institute for Insect Biotechnology, Division for Natural Product Research; Justus-Liebig-University Giessen, Ohlebergsweg 12, 35392 Giessen, Germany; German Center for Infection Research (DZIF); Partner Site Giessen-Marburg-Langen, Ohlebergsweg 12, 35392 Giessen, Germany; Natural Product Department; Fraunhofer-Institute for Molecular Biology and Applied Ecology (IME), Ohlebergsweg 12, 35392 Giessen, Germany. Electronic address:

Biosynthetic gene clusters of natural products often harbor genes of unknown function, which are difficult to characterize. Here, we present a protocol for the functional analysis in vitro and in vivo of these biosynthetic genes by heterologous expression in E. coli.

View Article and Find Full Text PDF

Honey bees coexist with fungi that colonize hive surfaces and pollen. Some of these fungi are opportunistic pathogens, but many are beneficial species that produce antimicrobial compounds for pollen conservation and the regulation of pathogen populations. In this study, we tested the in vitro antimicrobial activity of strains isolated from bee bread against (associated with European foulbrood disease) and three species that cause stonebrood disease.

View Article and Find Full Text PDF

Antibody-drug conjugates (ADCs) can improve therapeutic indices compared to plain monoclonal antibodies (mAbs). However, ADC synthesis is complex because the components are produced separately in CHO cells (mAb) and often by chemical synthesis (drug). They are individually purified, coupled, and then the ADC is purified, increasing production costs compared to regular mAbs.

View Article and Find Full Text PDF

Impact of chemical pollution on threatened marine mammals: A systematic review.

J Hazard Mater

October 2023

Wageningen Marine Research, Wageningen Research, 1976CP IJmuiden, the Netherlands.

Marine mammals, due to their long life span, key position in the food web, and large lipid deposits, often face significant health risks from accumulating contaminants. This systematic review examines published literature on pollutant-induced adverse health effects in the International Union for Conservation of Nature (IUCN) red-listed marine mammal species. Thereby, identifying gaps in literature across different extinction risk categories, spatial distribution and climatic zones of studied habitats, commonly used methodologies, researched pollutants, and mechanisms from cellular to population levels.

View Article and Find Full Text PDF

To improve cocoa pulp's shelf-life, preservation processes are necessary while maintaining the quality of the pulp. We applied pasteurisation and UHT-treatment and investigated different quality parameters: dry matter content, water activity, total soluble solids, colour and peroxidase activity. Both technologies inactivated peroxidase successfully.

View Article and Find Full Text PDF

Immune responses in COVID-19 patients during breakthrough infection with SARS-CoV-2 variants Delta, Omicron-BA.1 and Omicron-BA.5.

Front Immunol

August 2023

Department of Infectious Diseases, West German Centre of Infectious Diseases, University Hospital Essen, University of Duisburg-Essen, Essen, Germany.

Article Synopsis
  • Breakthrough infections of COVID-19, especially with variants like Omicron-BA.5, are becoming more common in vaccinated people, and the immune response to these variants is not well understood.
  • Researchers analyzed the immune responses of hospitalized COVID-19 patients during the Delta and Omicron waves using methods like ELISA and neutralization assays to measure antibodies and cellular immunity.
  • The study found reduced neutralizing antibodies against Omicron variants, with Delta and Omicron-BA.1 infections enhancing immune responses in double-vaccinated patients, but no improvement was observed for those infected with Omicron-BA.5.
View Article and Find Full Text PDF

Biodegradable polyphosphoester micelles act as both background-free P magnetic resonance imaging agents and drug nanocarriers.

Nat Commun

July 2023

Sustainable Polymer Chemistry Group, Department of Molecules and Materials, MESA+ Institute of Nanotechnology, Faculty of Science and Technology, University of Twente, Enschede, The Netherlands.

In vivo monitoring of polymers is crucial for drug delivery and tissue regeneration. Magnetic resonance imaging (MRI) is a whole-body imaging technique, and heteronuclear MRI allows quantitative imaging. However, MRI agents can result in environmental pollution and organ accumulation.

View Article and Find Full Text PDF

Genome- and metabolome-guided discovery of marine BamA inhibitors revealed a dedicated darobactin halogenase.

Cell Chem Biol

August 2023

Institute for Insect Biotechnology, Division for Natural Product Research, Justus-Liebig-University Giessen, Ohlebergsweg 12, 35392 Giessen, Germany; Natural Product Department, Fraunhofer-Institute for Molecular Biology and Applied Ecology (IME), Ohlebergsweg 12, 35392 Giessen, Germany; German Center for Infection Research (DZIF), Partner Site Giessen-Marburg-Langen, Ohlebergsweg 12, 35392 Giessen, Germany. Electronic address:

Darobactins represent a class of ribosomally synthesized and post-translationally modified peptide (RiPP) antibiotics featuring a rare bicyclic structure. They target the Bam-complex of Gram-negative bacteria and exhibit in vivo activity against drug-resistant pathogens. First isolated from Photorhabdus species, the corresponding biosynthetic gene clusters (BGCs) are widespread among γ-proteobacteria, including the genera Vibrio, Yersinia, and Pseudoalteromonas (P.

View Article and Find Full Text PDF

A novel approach for the assessment of invertebrate behavior and its use in behavioral ecotoxicology.

Sci Total Environ

November 2023

Goethe University of Frankfurt, Department Aquatic Ecotoxicology, Max-von-Laue-Straße 13, D-60438 Frankfurt am Main, Germany. Electronic address:

Sublethal effects are becoming more relevant in ecotoxicological test methods due to their higher sensitivity compared to lethal endpoints and their preventive nature. Such a promising sublethal endpoint is the movement behavior of invertebrates which is associated with the direct maintenance of various ecosystem processes, hence being of special interest for ecotoxicology. Disturbed movement behavior is often related to neurotoxicity and can affect drift, mate-finding, predator avoidance, and therefore population dynamics.

View Article and Find Full Text PDF

PFAS contamination of surface waters in central Europe was investigated in a spatial monitoring using suspended particulate matter and sediment samples. The samples were collected in 2021 at 171 sampling sites in Germany and at five sites in Dutch waters. All samples were analyzed for 41 different PFAS by target analysis to establish a baseline for these compounds.

View Article and Find Full Text PDF

The tobacco hornworm is used extensively as a model system for ecotoxicology, immunology and gut physiology. Here, we established a micro-computed tomography approach based on the oral application of the clinical contrast agent iodixanol, allowing for a high-resolution quantitative analysis of the gut. This technique permitted the identification of previously unknown and understudied structures, such as the crop or gastric ceca, and revealed the underlying complexity of the hindgut folding pattern, which is involved in fecal pellet formation.

View Article and Find Full Text PDF

Eukaryotic cell-free protein synthesis (CFPS) can accelerate expression and high-throughput analysis of complex proteins with functionally relevant post-translational modifications (PTMs). However, low yields and difficulties scaling such systems have prevented their widespread adoption in protein research and manufacturing. Here, we provide detailed demonstrations for the capabilities of a CFPS system derived from Nicotiana tabacum BY-2 cell culture (BY-2 lysate; BYL).

View Article and Find Full Text PDF

Comparison of the Ct-values for genomic and subgenomic SARS-CoV-2 RNA reveals limited predictive value for the presence of replication competent virus.

J Clin Virol

August 2023

Institute for Medical Virology, University Hospital Frankfurt, Goethe University Frankfurt am Main, Sandhofstr. 2-4, House 75, Room 1.207, Frankfurt am Main 60528, Germany. Electronic address:

Article Synopsis
  • - SARS-CoV-2 causes COVID-19, and while both genomic RNA (gRNA) and subgenomic RNAs (sgRNAs) are produced in infected cells, their roles in measuring active virus replication and predicting infectivity are debated.
  • - Current methods to monitor SARS-CoV-2 infections primarily use RT-qPCR to detect gRNA, but the relationship between viral load and infectivity depends on the assay's performance, as Ct-values may not accurately reflect the presence of active viruses.
  • - A study developed a multiplex RT-qPCR assay detecting both gRNA and sgRNA, finding no significant predictive advantage in using sgRNAs; in fact, gRNA alone was slightly more reliable for determining viral infectivity,
View Article and Find Full Text PDF

Analysis of fixation materials in micro-CT: It doesn't always have to be styrofoam.

PLoS One

June 2023

Department of Diagnostic and Interventional Radiology (Experimental Radiology), University Hospital Giessen, Giessen, Hesse, Germany.

Good fixation of filigree specimens for micro-CT examinations is often a challenge. Movement artefacts, over-radiation or even crushing of the specimen can easily occur. Since different specimens have different requirements, we scanned, analysed and compared 19 possible fixation materials under the same conditions in the micro-CT.

View Article and Find Full Text PDF

Large-scale transient expression of recombinant proteins in plants is increasingly used and requires the multi-liter cultivation of Agrobacterium tumefaciens transformed with an expression vector, which is often cloned in Escherichia coli first. Depending on the promoter, unintentional activity can occur in both bacteria, which could pose a safety risk to the environment and operators if the protein is toxic. To assess the risk associated with transient expression, we first tested expression vectors containing the CaMV35S promoter known to be active in plants and bacteria, along with controls to measure the accumulation of the corresponding recombinant proteins.

View Article and Find Full Text PDF