958 results match your criteria: "a Division of Plant Microbe Interactions; CSIR-National Botanical Research Institute[Affiliation]"

Modulation of plant immunity and biotic interactions under phosphate deficiency.

J Plant Res

May 2024

Division of Biological Science, Graduate School of Science and Technology, Nara Institute of Science and Technology, Takayama 8916-5, Ikoma, Nara, 630-0192, Japan.

Phosphorus (P) is an essential macronutrient for plant life and growth. P is primarily acquired in the form of inorganic phosphate (Pi) from soil. To cope with Pi deficiency, plants have evolved an elaborate system to improve Pi acquisition and utilization through an array of developmental and physiological changes, termed Pi starvation response (PSR).

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There is increasing evidence that interactions between microbes and their hosts not only play a role in determining health and disease but also in emotions, thought, and behavior. Built environments greatly influence microbiome exposures because of their built-in highly specific microbiomes coproduced with myriad metaorganisms including humans, pets, plants, rodents, and insects. Seemingly static built structures host complex ecologies of microorganisms that are only starting to be mapped.

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Soil microbial communities impact carbon sequestration and release, biogeochemical cycling, and agricultural yields. These global effects rely on metabolic interactions that modulate community composition and function. However, the physicochemical and taxonomic complexity of soil and the scarcity of available isolates for phenotypic testing are significant barriers to studying soil microbial interactions.

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Nitrogen fertilization modulates rice phyllosphere functional genes and pathogens through fungal communities.

Sci Total Environ

June 2024

MOE Key Laboratory of Environment Remediation and Ecological Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China. Electronic address:

The phyllosphere is a vital yet often neglected habitat hosting diverse microorganisms with various functions. However, studies regarding how the composition and functions of the phyllosphere microbiome respond to agricultural practices, like nitrogen fertilization, are limited. This study investigated the effects of long-term nitrogen fertilization with different levels (CK, N90, N210, N330) on the functional genes and pathogens of the rice phyllosphere microbiome.

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The extraction of bast fibres such as jute from plant stems involves the removal of pectin, hemicellulose, and other noncellulosic materials through a complex microbial community. A consortium of pectinolytic bacterial strains has been developed and commercialized to reduce the retting time and enhance fibre quality. However, there are currently no studies on jute that describe the structural changes and sequential microbial colonization and pectin loss that occur during microbe-assisted water retting.

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Extracellular vesicles: a new avenue for mRNA delivery.

Trends Plant Sci

August 2024

Department of Microbiology and Plant Pathology, Center for Plant Cell Biology, Institute for Integrative Genome Biology, University of California, Riverside, CA, USA. Electronic address:

Recent research reveals that plant mRNAs, packaged in extracellular vesicles, are delivered into fungal pathogen cells. Remarkably, the transferred mRNAs are translated by fungal ribosomes, generating functional proteins that impede infection. These findings offer new promising avenues to modify cellular performance by rapid delivery of mRNAs in plant-derived vesicles.

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Worldwide forest surveys reveal forty-three new species in major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity.

Stud Mycol

March 2024

Mendel University in Brno, Faculty of Forestry and Wood Technology, Department of Forest Protection and Wildlife Management, Phytophthora Research Centre, 613 00 Brno, Czech Republic.

Article Synopsis
  • A study conducted between 1998 and 2020 identified 43 new species in diverse ecosystems across Europe, Asia, and the Americas, using genetic analysis to classify them into existing and new subclades within a major clade.
  • The evolutionary history of this clade includes separations before and after the breakup of Gondwana, leading to distinct groups with varying lifestyles, such as soilborne and aerial species.
  • High levels of hybridization were observed in some subclades, indicating that environmental and breeding systems may encourage the emergence of new species, revealing significant gaps in our understanding of potential pathogen threats to ecosystems.
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Cytoskeleton remodeling: a central player in plant-fungus interactions.

J Exp Bot

June 2024

Plant Immunity Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.

The eukaryotic cytoskeleton is a complex scaffold consisting of actin filaments, intermediate filaments, and microtubules. Although fungi and plants lack intermediate filaments, their dynamic structural network of actin filaments and microtubules regulates cell shape, division, polarity, and vesicular trafficking. However, the specialized functions of the cytoskeleton during plant-fungus interactions remain elusive.

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The transcriptional response in mosquitoes distinguishes between fungi and bacteria but not Gram types.

BMC Genomics

April 2024

Cornell Institute of Host-Microbe Interactions and Disease, Department of Entomology, Cornell University, Ithaca, NY, 14853, USA.

Mosquitoes are prolific vectors of human pathogens, therefore a clear and accurate understanding of the organization of their antimicrobial defenses is crucial for informing the development of transmission control strategies. The canonical infection response in insects, as described in the insect model Drosophila melanogaster, is pathogen type-dependent, with distinct stereotypical responses to Gram-negative bacteria and Gram-positive bacteria/fungi mediated by the activation of the Imd and Toll pathways, respectively. To determine whether this pathogen-specific discrimination is shared by mosquitoes, we used RNAseq to capture the genome-wide transcriptional response of Aedes aegypti and Anopheles gambiae (s.

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Article Synopsis
  • Soil microorganisms, including archaea, bacteria, and fungi, are essential for enhancing agricultural productivity and sustainability by influencing ecosystem functions.
  • This study analyzed 2,903 soil samples along a latitudinal gradient in Japan to investigate the relationships between microbial community structures, soil factors, and crop disease prevalence using various statistical methods.
  • Findings revealed that different species of microbes form distinct groups that have varying impacts on crop diseases, highlighting the importance of certain microbes in promoting or suppressing these diseases, which can inform better agroecosystem management practices.
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Plant-microbe interactions play a crucial role in shaping plant health and survival. In recent years, the role of extracellular vesicles (EVs) in mediating intercellular communication between plants and microbes has emerged as an intriguing area of research. EVs serve as important carriers of bioactive molecules and genetic information, facilitating communication between cells and even between different organisms.

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Community-forming traits (CFts) play an important role in the effective colonization of plant-growth-promoting bacterial communities that influence host plants positively by modulating their adaptive functions. In this study, by considering plant-growth-promoting traits (PGPts) and community-forming traits (CFts), three communities were constructed, , SM1 (PGPts), SM2 (CFts), and SM3 (PGPts+CFts). Each category isolates were picked up on the basis of their catabolic diversity of different carbon sources.

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A fungal core effector exploits the OsPUX8B.2-OsCDC48-6 module to suppress plant immunity.

Nat Commun

March 2024

State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193, China.

Proteins containing a ubiquitin regulatory X (UBX) domain are cofactors of Cell Division Cycle 48 (CDC48) and function in protein quality control. However, whether and how UBX-containing proteins participate in host-microbe interactions remain unclear. Here we show that MoNLE1, an effector from the fungal pathogen Magnaporthe oryzae, is a core virulence factor that suppresses rice immunity by specifically interfering with OsPUX8B.

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Unraveling the functional characteristics of endophytic bacterial diversity for plant growth promotion and enhanced secondary metabolite production in Pelargonium graveolens.

Microbiol Res

June 2024

Division of Crop Production and Protection, Central Institute of Medicinal and Aromatic Plants, Lucknow 226015, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, India. Electronic address:

The rich diversity of microbial endophytic communities associated with plants, often referred to as the second genome, serves as a compelling illustration of efficient co-evolution. This noteworthy partnership plays a pivotal role in sustaining plant well-being and enhancing plant adaptability across diverse habitats. Therefore, examining the diversity of endophytic microbes associated with their particular host plant is valuable for gaining insights into the vast spectrum of plant-microbe interactions.

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Sugar transporters spatially organize microbiota colonization along the longitudinal root axis of Arabidopsis.

Cell Host Microbe

April 2024

Heinrich Heine University Düsseldorf, Faculty of Mathematics and Natural Sciences, Institute for Molecular Physiology, 40225 Düsseldorf, Germany; Cluster of Excellence on Plant Sciences, 40225 Düsseldorf, Germany; Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, 464-8601 Nagoya, Japan. Electronic address:

Article Synopsis
  • Plant roots have different structures and functions, which might affect how bacteria grow on them.
  • Researchers created two special setups to study different parts of plant roots and found that different types of bacteria live in different sections of the roots.
  • They discovered that certain plant sugars help the bacteria thrive in specific areas, showing how plant nutrients and bacteria depend on each other for a healthy ecosystem.
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  • Integrative and conjugative elements (ICEs) are mobile genetic elements that can transfer genes between diverse bacterial species, impacting traits like symbiosis, pathogenicity, and antibiotic resistance.
  • A study identified 53 different types of ICEs in a specific group of bacteria, termed PsICEs, which have unique structural features and evolutionary pathways compared to their bacterial hosts.
  • One prevalent cargo gene, Tn, while not affecting pathogen growth in plants, influences bacterial metabolism and gene expression in response to carbon sources, highlighting its role in bacterial fitness.
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Complete genome sequences of six duckweed-associated bacterial strains for studying community assembly in synthetic plant microbiome.

Microbiol Resour Announc

April 2024

Division of Sustainable Energy and Environmental Engineering, Graduate School of Engineering, Osaka University, Suita, Osaka, Japan.

We report the complete genome sequences of six bacterial strains isolated from a floating macrophyte, duckweed. These six strains, representing the six dominant families of the natural duckweed microbiome, establish a simple model ecosystem when inoculated onto sterilized duckweed. Their genomes would provide insights into community assembly in plant microbiome.

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Article Synopsis
  • Temporal variation in microbial community composition is crucial for understanding how these communities of long-lived plants like trees assemble and function, yet the factors influencing these changes remain largely unclear.
  • Research was conducted to investigate these variations by isolating the microbial composition in a controlled environment over different seasons and years, revealing that community composition varied significantly with both seasonal and long-term factors, accounting for up to 21% of the observed changes.
  • The study highlights the importance of considering both seasonal fluctuations and longer-term changes as they interact to shape unique patterns in tree microbiomes over time, emphasizing the need for more research on how these dynamics impact plant health and responses to environmental changes.
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Synthetic microbe-to-plant communication channels.

Nat Commun

February 2024

Department of Biological Engineering, Synthetic Biology Center, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.

Plants and microbes communicate to collaborate to stop pests, scavenge nutrients, and react to environmental change. Microbiota consisting of thousands of species interact with each other and plants using a large chemical language that is interpreted by complex regulatory networks. In this work, we develop modular interkingdom communication channels, enabling bacteria to convey environmental stimuli to plants.

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Article Synopsis
  • Fungal pathogens, particularly smut fungi, use specialized molecules called effectors for infection, with smut fungi having smaller genomes and secretomes compared to other plant pathogens.
  • A study analyzed the secretomes of 11 Ustilaginaceae species, identifying 53 core effector protein groups conserved in this family.
  • Testing revealed that 20 out of 53 mutant strains lacking specific effectors showed reduced virulence, leading to the identification of seven new core effectors that contribute to pathogenicity.
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Microbes encounter a myriad of stresses during their life cycle. Dysregulation of metal ion homeostasis is increasingly recognized as a key factor in host-microbe interactions. Bacterial metal ion homeostasis is tightly regulated by dedicated metalloregulators that control uptake, sequestration, trafficking, and efflux.

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Soil microorganisms control the fate of soil organic carbon. Warming may accelerate their activities putting large carbon stocks at risk of decomposition. Existing knowledge about microbial responses to warming is based on community-level measurements, leaving the underlying mechanisms unexplored and hindering predictions.

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Root architecture is an important agronomic trait that plays an essential role in water uptake, soil compactions, nutrient recycling, plant-microbe interactions, and hormone-mediated signaling pathways. Recently, significant advancements have been made in understanding how the complex interactions of phytohormones regulate the dynamic organization of root architecture in crops. Moreover, phytohormones, particularly auxin, act as internal regulators of root development in soil, starting from the early organogenesis to the formation of root hair (RH) through diverse signaling mechanisms.

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Article Synopsis
  • - The interaction between plants and fungi is complex and not fully understood, particularly how fungal endophytes successfully colonize plants without causing harm.
  • - Small RNAs, specifically miRNAs, play a crucial role in regulating these biotic interactions, and this study focused on identifying them in the model plant Arabidopsis thaliana.
  • - The research identified 15 differentially expressed miRNAs, with ath-miRNA398b being particularly important, and confirmed its regulatory role along with target genes through various analysis methods, highlighting the significant role of miRNAs in plant-fungal interactions.
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