Calibration of Distribution Analysis of the Depth of Membrane Penetration Using Simulations and Depth-Dependent Fluorescence Quenching.

Determination of the depth of membrane penetration provides important information for studies of membrane protein folding and protein-lipid interactions. Here, we use a combination of molecular dynamics (MD) simulations and depth-dependent fluorescence quenching to calibrate the methodology for extracting quantitative information on membrane penetration. In order to investigate the immersion depth of the fluorescent label in lipid bilayer, we studied 7-nitrobenz-2-oxa-1,3-diazole (NBD) attached to the lipid headgroup in NBD-PE incorporated into POPC bilayer.

Motility and fertilization ability of sterlet Acipenser ruthenus testicular sperm after cryopreservation.

Sturgeon spermatozoa are immotile in the testis and acquire the potential for motility after contact with urine in Wolffian duct. The present study tested if in vitro incubation of testicular sperm in seminal fluid from Wolffian duct sperm leads to the acquisition of sperm fertilization ability. Sterlet sperm was taken from the testes, matured in vitro and cryopreserved.

In vitro sperm maturation in sterlet, Acipenser ruthenus.

The aim of the study was to examine sperm maturation in sturgeon and to establish the localization of the maturation. We demonstrated that sperm maturation occurs in sturgeon outside the testes via dilution of sperm by urine. The process involves the participation of high molecular weight (>10kDa) substances and calcium ions.

Structure, solvation, and dynamics of Mg²⁺, Ca²⁺, Sr²⁺, and Ba²⁺ complexes with 3-hydroxyflavone and perchlorate anion in acetonitrile medium: a molecular dynamics simulation study.

Molecular dynamics simulations of complexes of Mg(2+), Ca(2+), Sr(2+), and Ba(2+) with 3-hydroxyflavone (flavonol, 3HF) and ClO₄⁻ in acetonitrile were performed. The united atoms force field model was proposed for the 3HF molecule using the results of DFT quantum chemical calculations. 3HF was interpreted as a rigid molecule with two internal degrees of freedom, i.

Translational diffusion in mixtures of imidazolium ILs with polar aprotic molecular solvents.

Self-diffusion coefficients of cations and solvent molecules were determined with (1)H NMR in mixtures of 1-n-butyl-3-methylimidazolium (Bmim(+)) tetrafluoroborate (BF4(-)), hexafluorophosphate (PF6(-)), trifluoromethanesulfonate (TfO(-)), and bis(trifluoromethylsulfonyl)imide (TFSI(-)) with acetonitrile (AN), γ-butyrolactone (γ-BL), and propylene carbonate (PC) over the entire composition range at 300 K. The relative diffusivities of solvent molecules to cations as a function of concentration were found to depend on the solvent but not on the anion (i.e.

Location of novel benzanthrone dyes in model membranes as revealed by resonance energy transfer.

Förster resonance energy transfer (FRET) between anthrylvinyl-labeled phosphatidylcholine (AV-PC) as a donor and newly synthesized benzanthrones (referred to here as A8, A6, AM12, AM15 and AM18) as acceptors has been examined to gain insight into molecular level details of the interactions between benzanthrone dyes and model lipid membranes composed of zwitterionic lipid phosphatidylcholine and its mixtures with anionic lipids cardiolipin (CL) and phosphatidylglycerol (PG). FRET data were quantitatively analyzed in terms of the model of energy transfer in two-dimensional systems taking into account the distance dependence of orientation factor. Evidence for A8 location in phospholipid headgroup region has been obtained.

Berberine Attenuated Aging-Accelerating Effect of High Temperature in Drosophila Model.

We have observed that berberine prolonged life span and improved viability of pupae and climbing activity of imagoes of wild-type Drosophila melanogaster maintained at 23°C. As a continuation of our studies of berberine effect on life span, we were interested to evaluate the effect of berberine of life span in flies maintained at a higher temperature (28°C) known to accelerate aging in wild type flies. Considering that genetically or pharmacologically induced deficiency of TRP conversion into KYN prolonged life span in a Drosophila model, we compared the effects of berberine, a powerful inhibitor of kynurenine (KYN) formation from tryptophan (TRP), on life span in wild type and in Drosophila melanogaster mutants (vermilion) with deficient TRP-KYN metabolism maintained at 23°C and 28°C.

Fluorescence Investigation of Interactions Between Novel Benzanthrone Dyes and Lysozyme Amyloid Fibrils.

A series of novel fluorescent benzanthrone dyes have been tested for their ability to identify and characterize fibrillar aggregates of lysozyme prepared by protein denaturation in concentrated ethanol solution (F(eth)) or acidic buffer (F(ac)). Quantitative parameters of the dye association with native and fibrillar protein have been derived from the results of fluorimetric titration. The binding characteristics proved to be different for F(eth)- and F(ac)-bound benzanthrones, highlighting the dye sensitivity to the distinctions in fibril morphology.

Interaction of thioflavin T with amyloid fibrils of apolipoprotein A-I N-terminal fragment: resonance energy transfer study.

Apolipoprotein A-I is amenable to a number of specific mutations associated with hereditary systemic amyloidoses. Amyloidogenic properties of apoA-I are determined mainly by its N-terminal fragment. In the present study Förster resonance energy transfer between tryptophan as a donor and Thioflavin T as an acceptor was employed to obtain structural information on the amyloid fibrils formed by apoA-I variant 1-83/G26R/W@8.

Discharging of dust particles in the afterglow of plasma with large dust density.

The discharging of dust particles in the afterglow of plasma with large dust density is studied. We used measured electron and metastable dependencies to calculate the rate describing collection of electrons by dust particles by solving the electron balance equation. This rate is compared with the rate calculated using the orbital motion limited (OML) theory.

Discrete modeling of dynamics of zooplankton community at the different stages of an antropogeneous eutrophication.

Mathematical modeling is a convenient way for characterization of complex ecosystems. This approach was applied to study the dynamics of zooplankton in Lake Sevan (Armenia) at different stages of anthropogenic eutrophication with the use of a novel method called discrete modeling of dynamical systems with feedback (DMDS). Simulation demonstrated that the application of this method helps in characterization of inter- and intra-component relationships in a natural ecosystem.

Fluorescence study of the membrane effects of aggregated lysozyme.

The last decade has seen unprecedented upsurge of interest in the structural and toxic properties of particular type of protein aggregates, amyloid fibrils, associated with a number of pathological states. In the present study fluorescence spectroscopy technique has been employed to gain further insight into the membrane-related mechanisms of amyloid toxicity. To this end, erythrocyte model system composed of liposomes and hemoglobin was subjected to the action of oligomeric and fibrillar lysozyme.

Pogonophryne neyelovi , a new species of Antarctic short-barbeled plunderfish (Perciformes, Notothenioidei, Artedidraconidae) from the deep Ross Sea.

This paper continues descriptions of new deep-water Antarctic barbeled plunderfishes of the poorly known and the most speciose notothenioid genus Pogonophryne. It is based on a comprehensive collection obtained by the authors in 2009-2010 during an Antarctic toothfish (Dissostichus mawsoni) fishing trip. A new species, the hopbeard plunderfish Pogonophryne neyelovi, the twenty-second species of the genus, is described.

New records of the chaetiferous leech-like annelid Paracanthobdella livanowi (Epshtein, 1966) (Annelida: Clitellata: Acanthobdellida) from Kamchatka, Russia.

Acanthobdellidans are unique in their organisation and phylogenetic relationships due to having transitional characters that combine features of oligochaetous and achaetous annelids. Alongside the relatively well-studied Acanthobdella peledina Grube, 1851, there is another member of the group, Paracanthobdella livanowi (Epshtein, 1966), with five rows of chaetae and an anterior sucker. It appears that the anterior sucker is weakly developed in small juveniles but acquires a deep cavity in adults.

Transmission of electromagnetic waves through a two-layer plasma structure with spatially nonuniform electron density.

Transmission of a p-polarized electromagnetic wave through a two-layer plasma structure with spatially nonuniform distributions of electron density in the layers is studied. The case, when the electromagnetic wave is obliquely incident on the structure and is evanescent in both plasma layers, is considered. The conditions for total transparency of the two-layer structure are found for the thin slab case and when the plasma inhomogeneity is weak.

Empirical laws of particle extraction from single-grid source of bipolar ion-electron flow.

The present research is devoted to the problem of extraction grid choice for a single-grid source of bipolar ion-electron flow. The paper contains detailed reference information on ion and electron extraction characteristics of 10 different grids with broad range of parameters: aperture width (0.09-0.

Displacement spectra under isometric muscle contraction: spectral Doppler study and theoretical models of ultrasound response and muscle contraction.

Objectives: The purposes of this work were to detect the microscopic displacements accompanying isometric muscle tissue contraction under different external loads, to explore their spectral characteristics, and to develop physical models capable of explaining the experimental data obtained.

Methods: By means of a spectral Doppler musculoskeletal ultrasound method, spectral characteristics of local isometric skeletal muscle tissue contraction were studied. In this method, the phased fluctuation (Doppler) algorithm is used to estimate tissue displacements within the given sample volume in real time, and the spectral characteristics of recorded displacements are determined.

Minocycline effect on life and health span of Drosophila melanogaster.

Up-regulation of kynurenine (KYN) pathway of tryptophan (TRP) was suggested as one of the mechanisms of aging and aging-associated disorders. Genetic and pharmacological impairment of TRP - KYN metabolism resulted in prolongation of life span in Drosophila models. Minocycline, an antibiotic with anti-inflammatory, antioxidant and neuroprotective properties independent of its antibacterial activity, inhibited KYN formation from TRP.

Study of structure of calcium phosphate materials by means of electron spin resonance.

Structure of γ-irradiated calcium phosphates synthesized in different conditions was studied by means of ESR. It has been shown that amorphous and nanocrystalline calcium phosphates have qualitatively different ESR spectra. The new paramagnetic center in hydroxyapatite (HA) has been found.

Compact steady-state and high-flux Falcon ion source for tests of plasma-facing materials.

This paper describes the design and operation of the Falcon ion source. It is based on conventional design of anode layer thrusters. This ion source is a versatile, compact, affordable, and highly functional in the research field of the fusion materials.

Berberine Prolongs Life Span and Stimulates Locomotor Activity of .

mutants with deficient kynurenine (KYN) formation from tryptophan (TRP) have longer life span than wild type flies. Administration of alpha-methyl-TRP and 5-methyl-TRY, the inhibitors of TRP-KYN metabolism, prolonged life span in wild-type flies. Both inhibitors are not available for human use.

Correlation functions and power spectra of Doppler response signals in ultrasonic medical applications.

Ultrasound Doppler methods are widely used in clinical practice as prospective investigational tool to study the vascular system and soft biological tissues. Meanwhile, the most general relationship between the power Doppler spectra, spectral characteristics of the scattering fluctuations and the probing ultrasound field parameters for some clinical implementations are still unexplored. Based upon the continuum model of scattering inhomogeneities, a set of the closed-form expressions for the correlation functions and the spectra of Doppler response of soft tissues and blood have been derived.

Microscopic structure and dynamics of LiBF4 solutions in cyclic and linear carbonates.

Motivated by development of lithium-ion batteries, we study the structure and dynamics of LiBF(4) in pure and mixed solvents with various salt concentrations. For this purpose, we have developed force field models for ethylene carbonate, propylene carbonate, dimethyl carbonate, and dimethoxyethane. We find that Li(+) is preferentially solvated by the cyclic and more polar component of the mixtures, as the electrostatic interaction overcomes possible steric hindrances.

Resonant transparency of a two-layer plasma structure in a magnetic field.

Transparency of a two-layer plasma structure in an external steady-state magnetic field, perpendicular to the wave incidence plane, is studied. The case of the p-polarized electromagnetic wave is considered. The electromagnetic wave is obliquely incident on the two-layer structure and is evanescent in both layers.

Partitioning of 2,6-Bis(1H-Benzimidazol-2-yl)pyridine fluorophore into a phospholipid bilayer: complementary use of fluorescence quenching studies and molecular dynamics simulations.

Successful use of fluorescence sensing in elucidating the biophysical properties of lipid membranes requires knowledge of the distribution and location of an emitting molecule in the bilayer. We report here that 2,6-bis(1H-benzimidazol-2-yl)pyridine (BBP), which is almost non-fluorescent in aqueous solutions, reveals a strong emission enhancement in a hydrophobic environment of a phospholipid bilayer, making it interesting for fluorescence probing of water content in a lipid membrane. Comparing the fluorescence behavior of BBP in a wide variety of solvents with those in phospholipid vesicles, we suggest that the hydrogen bonding interactions between a BBP fluorophore and water molecules play a crucial role in the observed "light switch effect".