22,050 results match your criteria: "University of Tubingen.[Affiliation]"

In recent years, nanoflow sheath liquid (nanoSL) interfaces have been used more commonly for capillary electrophoresis-mass spectrometry (CE-MS) coupling due to their high sensitivity combined with flexibility in CE separation conditions. So far, the exact amount of sheath liquid (SL) and, thus, the dilution effect remain unknown due to the self-supplying type of the nanoSL interfaces. To quantify the SL flow rates, we present here an approach for the determination of the flow rate based on isotopically labeled standards using the nanoCEasy interface.

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Introduction: Alzheimer disease (AD)-modifying therapies are approved for treatment of early-symptomatic AD. Autosomal dominant AD (ADAD) provides a unique opportunity to test therapies in presymptomatic individuals.

Methods: Using data from the Dominantly Inherited Alzheimer Network (DIAN), sample sizes for clinical trials were estimated for various cognitive, imaging, and CSF outcomes.

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Mutations in mitochondrial gene and disease, lessons from models.

Front Neurosci

November 2024

Institute of Medical Genetics and Applied Genomics, University of Tübingen, Tübingen, Germany.

Article Synopsis
  • Pathogenic variants in a specific gene cluster are linked to various neurodevelopmental disorders, presenting symptoms such as developmental delays, low muscle tone, and heart issues.
  • This gene codes for a mitochondrial ATPase, which plays an unclear role in mitochondrial diseases commonly seen in children.
  • Mouse models with both loss-of-function and overexpression of pathogenic variants have helped researchers explore the gene's function and understand the related diseases better.
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Hematoxylin and eosin (H&E) is a common and inexpensive histopathology assay. Though widely used and information-rich, it cannot directly inform about specific molecular markers, which require additional experiments to assess. To address this gap, we present a deep-learning framework that computationally imputes the expression and localization of dozens of proteins from H&E images.

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CNV-Finder: Streamlining Copy Number Variation Discovery.

bioRxiv

November 2024

Center for Alzheimer's and Related Dementias (CARD), National Institute on Aging and National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, USA.

Article Synopsis
  • Copy Number Variations (CNVs) are crucial in understanding complex diseases and vary across different populations, necessitating large sample studies for accurate analysis.
  • The CNV-Finder pipeline utilizes deep learning, specifically Long Short-Term Memory (LSTM) networks, to streamline the identification of CNVs in specific genomic areas, making subsequent analyses like genome sequencing more efficient.
  • The tool has been validated with data from various cohorts, focusing on genes related to neurological diseases, and includes an interactive web application for researchers to visualize and refine their findings based on model predictions.
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Metabolic dysfunction-associated steatohepatitis (MASH) is a leading cause of chronic liver disease with few therapeutic options. To narrow the translational gap in the development of pharmacological MASH treatments, a 3D liver model from primary human hepatocytes and non-parenchymal cells derived from patients with histologically confirmed MASH was established. The model closely mirrors disease-relevant endpoints, such as steatosis, inflammation and fibrosis, and multi-omics analyses show excellent alignment with biopsy data from 306 MASH patients and 77 controls.

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Scientific discoveries often hinge on synthesizing decades of research, a task that potentially outstrips human information processing capacities. Large language models (LLMs) offer a solution. LLMs trained on the vast scientific literature could potentially integrate noisy yet interrelated findings to forecast novel results better than human experts.

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Article Synopsis
  • Anxiety disorders are common and typically treated with cognitive behavioral therapy and medication, but some patients don’t respond well to these methods.
  • A clinical trial involving 76 individuals with acrophobia tested the effectiveness of intermittent theta burst stimulation (iTBS) combined with virtual reality exposure therapy, finding a significant reduction in phobic symptoms.
  • However, the study concluded that iTBS did not provide additional benefits over a placebo version, suggesting the need for more personalized TMS approaches and further research to optimize treatment.
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Young rat microbiota extracts strongly inhibit fibrillation of α-synuclein and protect neuroblastoma cells and zebrafish against α-synuclein toxicity.

Mol Cells

January 2025

Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Gustav Wieds Vej 14, 8000 Aarhus Centrum, Denmark; Department of Molecular Biology and Genetics, Aarhus University, Universitetsbyen 81, 8000 Aarhus Centrum, Denmark. Electronic address:

The clinical manifestations of Parkinson's disease (PD) are driven by aggregation of α-Synuclein (α-Syn) in the brain. However, there is increasing evidence that PD may be initiated in the gut and thence spread to the brain, eg, via the vagus nerve. Many studies link PD to changes in the gut microbiome, and bacterial amyloid has been shown to stimulate α-Syn aggregation.

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Intact protein barcoding enables one-shot identification of CRISPRi strains and their metabolic state.

Cell Rep Methods

December 2024

Interfaculty Institute of Microbiology and Infection Medicine, University of Tübingen, Auf der Morgenstelle 24, 72076 Tübingen, Germany; Cluster of Excellence "Controlling Microbes to Fight Infections", University of Tübingen, 72076 Tübingen, Germany; M3 Research Center, University of Tübingen, 72076 Tübingen, Germany. Electronic address:

Detecting strain-specific barcodes with mass spectrometry can facilitate the screening of genetically engineered bacterial libraries. Here, we introduce intact protein barcoding, a method to measure protein-based library barcodes and metabolites using flow injection mass spectrometry (FI-MS). Protein barcodes are based on ubiquitin with N-terminal tags of six amino acids.

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Attention-aware semantic relevance predicting Chinese sentence reading.

Cognition

February 2025

College of Foreign Languages and Literature, Fudan University, China.

In recent years, several influential computational models and metrics have been proposed to predict how humans comprehend and process sentence. One particularly promising approach is contextual semantic similarity. Inspired by the attention algorithm in Transformer and human memory mechanisms, this study proposes an "attention-aware" approach for computing contextual semantic relevance.

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Probing the orientation specificity of excitatory and inhibitory circuitries in the primary motor cortex with multi-channel TMS.

Clin Neurophysiol

January 2025

Department of Neuroscience and Biomedical Engineering, Aalto University School of Science, Espoo, Finland; BioMag Laboratory, HUS Medical Imaging Center, Aalto University, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.

Objective: Electric-field orientation is crucial for optimizing neuronal excitation in transcranial magnetic stimulation (TMS). Yet, the stimulus orientation effects on short-interval intracortical inhibition (SICI) and intracortical facilitation (ICF) are poorly understood due to technical challenges in manipulating the TMS-induced stimulus orientation within milliseconds. We aimed to assess the orientation sensitivity of SICI and ICF paradigms and identify optimal orientations for motor evoked potential (MEP) facilitation and suppression.

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Sensory neurons often encode multisensory or multimodal signals. For example, many medial superior temporal (MST) neurons are tuned to heading direction of self-motion based on visual (optic flow) signals and vestibular signals. Middle temporal (MT) cortical neurons are tuned to object depth from signals of two visual modalities: motion parallax and binocular disparity.

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The assessment of individual students is not only crucial in the school setting but also at the core of educational research. Although classical test theory focuses on maximizing insights from student responses, the Bayesian perspective incorporates the assessor's prior belief, thereby enriching assessment with knowledge gained from previous interactions with the student or with similar students. We propose and illustrate a formal Bayesian approach that not only allows to form a stronger belief about a student's competency but also offers a more accurate assessment than classical test theory.

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Article Synopsis
  • The study explores how different dietary fat intakes affect glucagon levels, crucial for lipid metabolism, using 92 twins on a low-fat diet (LFD) followed by a high-fat diet (HFD) and some on a high-protein diet (HPD).
  • Results showed a significant reduction in glucagon levels during the LFD, while transitioning to the HFD led to a marked increase in glucagon and a decrease in free fatty acids. The HPD further elevated glucagon levels despite stable fasting amino acids.
  • Overall, the findings suggest that a high-fat diet boosts glucagon levels and improves the glucagon-to-insulin ratio, potentially helping to prevent fat accumulation in the
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Diversity of Neurotransmitter-Producing Human Skin Commensals.

Int J Mol Sci

November 2024

Microbial Genetics, Interfaculty Institute of Microbiology and Infection Medicine Tübingen (IMIT), University of Tübingen, 72076 Tübingen, Germany.

Recent findings indicate that human microbiota can excrete trace amines, dopamine, and serotonin. These neurotransmitters (NTs) can either affect classical neurotransmitter signaling or directly trigger trace amine-associated receptors (TAARs), with still unclear consequences for host physiology. Compared to gut microbiota, less information is available on the role of skin microbiota in NT production.

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SGCs are rare malignancies, accounting for less than 1% of all head and neck cancers [...

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Background/objectives: This retrospective observational study aimed to investigate the perioperative outcome in Malignant Peripheral Nerve Sheath Tumors (MPNSTs) with and without relation to Neurofibromatosis Type 1 (NF1) and to detect possible influencing factors.

Methods: Clinical reports, histopathological evaluations, imaging, and treatment characteristics were reviewed in 35 operated MPNSTs in 33 patients. Possible predictive valuables included disease type, preoperative tumor volume, SUV and MIB-1 proliferation index, resection margins, the presence of metastasis, and whether radio-/chemotherapy was received.

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Continuous Tuning of Intersystem Crossing Times in Rose Bengal Water/Methanol Solutions.

J Phys Chem B

December 2024

Institute of Physical and Theoretical Chemistry, Eberhard Karls University of Tübingen, Auf der Morgenstelle 18, D-72076 Tübingen, Germany.

We use femtosecond transient broadband absorption spectroscopy (TAS) to characterize Rose Bengal in water/methanol solutions and reveal a continuous tunability of intersystem crossing (ISC) times by changing the mole fraction of the solvents. We find that the transients of excited state absorptions (ESAs) in Rose Bengal at ∼430 nm can be attributed to transitions from the singlet state S, with decay times of 74 ps via ISC in pure water and up to 405 ps in pure methanol. TA measurements at near-infrared wavelengths, on the other hand, reveal the rise of an ESA at ∼1080 nm from the triplet state T with time constants of 68 and 491 ps in pure water and methanol, respectively, strongly supporting the associated UV-vis TAS data.

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Carrageenan and insulin resistance in humans: a randomised double-blind cross-over trial.

BMC Med

November 2024

Department of Internal Medicine IV, Division of Endocrinology, Diabetology and Nephrology, University Hospital of Tübingen, Tübingen, Germany.

Background: The potential impact of specific food additives, common in Western diets, on the risk of developing type 2 diabetes is not well understood. This study focuses on carrageenan, a widely used food additive known to induce insulin resistance and gut inflammation in animal models, and its effects on human health.

Methods: In a randomised, double-blind, placebo-controlled, cross-over trial conducted at a university hospital metabolic study centre, 20 males (age 27.

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Roles for primary cilia in synapses and neurological disorders.

Trends Cell Biol

January 2025

Interfaculty Institute of Biochemistry, University of Tübingen, Auf der Morgenstelle 34, Tübingen 72076, Germany. Electronic address:

The role of primary cilia has recently garnered significant attention in the field of neurodegeneration. This review explores the diversity of primary cilia in the mature brain and their interrelationships with a multitude of cellular structures, including axons and synapses. Importantly, an overview of the growing prominence of ciliary-related dysfunctions in neurodegenerative diseases is summarized, with a special emphasis on Parkinson's disease (PD) and neuropsychiatric disorders.

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Article Synopsis
  • Dysregulation of cytokines and their receptors can lead to serious health issues like cancer and autoimmune disorders, prompting the need for effective treatments.
  • Researchers designed specific blockers for the granulocyte-colony stimulating factor receptor (G-CSFR), which plays a role in leukemia and inflammatory diseases.
  • The engineered proteins were highly stable and effective at inhibiting G-CSFR in cancer cells, suggesting that this method could also be applied to develop treatments for other related cytokine receptors.
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Background: Patients with chronic liver disease (CLD) have impaired vaccine immunogenicity and an excess risk of severe COVID-19. While variant-adapted COVID-19 mRNA vaccines are recommended for vulnerable individuals, their efficacy in patients with CLD has not been studied.

Methods: We present the first evaluation of XBB.

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Purpose: To analyze the longitudinal epidemiology and antimicrobial resistance (AMR) patterns of Gram-negative bloodstream infections (BSI) in Germany.

Methods: Post-hoc analysis of prospectively documented BSI due to Escherichia coli, Klebsiella spp., Enterobacter spp.

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