341 results match your criteria: "University of Tokyo Institutes for Advanced Study[Affiliation]"

Comprehensive evaluation of pipelines for classification of psychiatric disorders using multi-site resting-state fMRI datasets.

Neural Netw

February 2025

Brain Information Communication Research Laboratory Group, Advanced Telecommunications Research Institute International, Kyoto, Japan; RIKEN, Center for Advanced Intelligence Project, Tokyo, Japan. Electronic address:

Objective classification biomarkers that are developed using resting-state functional magnetic resonance imaging (rs-fMRI) data are expected to contribute to more effective treatment for psychiatric disorders. Unfortunately, no widely accepted biomarkers are available at present, partially because of the large variety of analysis pipelines for their development. In this study, we comprehensively evaluated analysis pipelines using a large-scale, multi-site fMRI dataset for major depressive disorder (MDD).

View Article and Find Full Text PDF

Beyond case-control study in neuroimaging for psychiatric disorders: Harmonizing and utilizing the brain images from multiple sites.

Neurosci Biobehav Rev

April 2025

Laboratory for Brain Connectomics Imaging, RIKEN Center for Biosystems Dynamics Research, Hyogo 351-0198, Japan; Department of Brain Connectomics, Kyoto University Graduate School of Medicine, Kyoto 606-8501, Japan.

Recent magnetic resonance imaging (MRI) research has advanced our understanding of brain pathophysiology in psychiatric disorders. This progress necessitates re-evaluation of the diagnostic system for psychiatric disorders based on MRI-based biomarkers, with implications for precise clinical diagnosis and optimal therapeutics. To achieve this goal, large-scale multi-site studies are essential to develop a standardized MRI database, with the analysis of several thousands of images and the incorporation of new data.

View Article and Find Full Text PDF

One of the challenges in diagnosing psychiatric disorders is that the results of biological and neuroscience research are not reflected in the diagnostic criteria. Thus, data-driven analyses incorporating biological and cross-disease perspectives, regardless of the diagnostic category, have recently been proposed. A data-driven clustering study based on subcortical volumes in 5604 subjects classified into four brain biotypes associated with cognitive/social functioning.

View Article and Find Full Text PDF

Stratifying and predicting progression to acute liver failure during the early phase of acute liver injury.

PNAS Nexus

February 2025

Department of Medicine and Bioregulatory Science, Graduate School of Medical Sciences, Kyushu University, Fukuoka 812-8582, Japan.

Acute liver failure (ALF) is a serious disease that progresses from acute liver injury (ALI) and that often leads to multiorgan failure and ultimately death. Currently, effective treatment strategies for ALF, aside from transplantation, remain elusive, partly because ALI is highly heterogeneous. Furthermore, clinicians lack a quantitative indicator that they can use to predict which patients hospitalized with ALI will progress to ALF and the need for liver transplantation.

View Article and Find Full Text PDF

The Super-Kamiokande and T2K Collaborations present a joint measurement of neutrino oscillation parameters from their atmospheric and beam neutrino data. It uses a common interaction model for events overlapping in neutrino energy and correlated detector systematic uncertainties between the two datasets, which are found to be compatible. Using 3244.

View Article and Find Full Text PDF

One-core neuron deep learning for time series prediction.

Natl Sci Rev

February 2025

Key Laboratory of Systems Health Science of Zhejiang Province, School of Life Science, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Hangzhou 310024, China.

The enormous computational requirements and unsustainable resource consumption associated with massive parameters of large language models and large vision models have given rise to challenging issues. Here, we propose an interpretable 'small model' framework characterized by only a single core-neuron, i.e.

View Article and Find Full Text PDF

Prediction of cccDNA dynamics in hepatitis B patients by a combination of serum surrogate markers.

PLoS Comput Biol

January 2025

Department of Gastroenterology and Hepatology, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.

Quantification of intrahepatic covalently closed circular DNA (cccDNA) is a key for evaluating an elimination of hepatitis B virus (HBV) in infected patients. However, quantifying cccDNA requires invasive methods such as a liver biopsy, which makes it impractical to access the dynamics of cccDNA in patients. Although HBV RNA and HBV core-related antigens (HBcrAg) have been proposed as surrogate markers for evaluating cccDNA activity, they do not necessarily estimate the amount of cccDNA.

View Article and Find Full Text PDF

Aging in a weighted ensemble of excitable and self-oscillatory neurons: The role of pairwise and higher-order interactions.

Chaos

January 2025

International Research Center for Neurointelligence, The University of Tokyo Institutes for Advanced Study, The University of Tokyo, Bunkyo Ku, Tokyo 113 8654, Japan.

We investigate the aging transition in networks of excitable and self-oscillatory units as the fraction of inherently excitable units increases. Two network topologies are considered: a scale-free network with weighted pairwise interactions and a two-dimensional simplicial complex with weighted scale-free pairwise and triadic interactions. Without triadic interactions, the aging transition from collective oscillations to oscillation death (inhomogeneous stationary states) can occur either suddenly or through an intermediate state of partial oscillation.

View Article and Find Full Text PDF

Effectiveness of sequential bilateral repetitive transcranial stimulation versus bilateral theta burst stimulation for patients with treatment-resistant depression (BEAT-D): A randomized non-inferiority clinical trial.

Brain Stimul

February 2025

Department of Neuropsychiatry, Keio University School of Medicine, 35 Shinanomachi, Shinjuku, Tokyo, 160-8582, Japan; Shinjuku-Yoyogi Mental Lab Clinic, 5-27-5 Sendagaya, Shibuyaku, Tokyo, 151-0051, Japan; Department of Psychiatry, International University of Health and Welfare, Mita Hospital, 1-4-3 Mita, Minato-ku, Tokyo, 108-8329, Japan. Electronic address:

Background: Bilateral repetitive transcranial magnetic stimulation (BL-rTMS) over the dorsolateral prefrontal cortex is effective for treatment-resistant depression (TRD). Owing to a shorter treatment time, bilateral theta burst stimulation (BL-TBS) can be more efficient protocol. The non-inferiority of BL-TBS to BL-rTMS was established in late-life TRD; however, this has not been determined in adults of other age groups.

View Article and Find Full Text PDF

Background: Schools are central places for adolescent social lives, which is a major factor greatly affecting adolescent mental health; school climate (i.e. quality of the school social environments) can be a proximal social determinant for adolescent mental health.

View Article and Find Full Text PDF

Owing to their rapid cooling rate and hence loss-limited propagation distance, cosmic-ray electrons and positrons (CRe) at very high energies probe local cosmic-ray accelerators and provide constraints on exotic production mechanisms such as annihilation of dark matter particles. We present a high-statistics measurement of the spectrum of CRe candidate events from 0.3 to 40 TeV with the High Energy Stereoscopic System, covering 2 orders of magnitude in energy and reaching a proton rejection power of better than 10^{4}.

View Article and Find Full Text PDF

Increased structural covariance of cortical measures in individuals with an at-risk mental state.

Prog Neuropsychopharmacol Biol Psychiatry

January 2025

Department of Neuropsychiatry, University of Toyama Graduate School of Medicine and Pharmaceutical Sciences, 2630 Sugitani, Toyama city, Toyama 930-0194, Japan; Research Center for Idling Brain Science, University of Toyama, 2630 Sugitani, Toyama city, Toyama 930-0194, Japan.

An anomalous pattern of structural covariance has been reported in schizophrenia, which has been suggested to represent connectome changes during brain maturation and neuroprogressive processes. It remains unclear whether similar differences exist in a clinical high-risk state for psychosis, and if they are associated with a prodromal phenotype and/or later psychosis onset. This multicenter magnetic resonance imaging study cross-sectionally examined structural covariance in a large at-risk mental state (ARMS) sample with different outcomes.

View Article and Find Full Text PDF

MCGAE: unraveling tumor invasion through integrated multimodal spatial transcriptomics.

Brief Bioinform

November 2024

Lingang Laboratory, Building 8, 319 Yueyang Road, Xuhui District, Shanghai 200031, China.

Spatially Resolved Transcriptomics (SRT) serves as a cornerstone in biomedical research, revealing the heterogeneity of tissue microenvironments. Integrating multimodal data including gene expression, spatial coordinates, and morphological information poses significant challenges for accurate spatial domain identification. Herein, we present the Multi-view Contrastive Graph Autoencoder (MCGAE), a cutting-edge deep computational framework specifically designed for the intricate analysis of spatial transcriptomics (ST) data.

View Article and Find Full Text PDF

Mismatch negativity (MMN) has gained attention as a biomarker for psychosis and a translational intermediate phenotype in animal models of psychosis, including rodents and non-human primates. MMN has been linked to global functioning (Global Assessment of Functioning [GAF] score) and prognosis (psychosis onset or remission), suggesting that MMN reflects activities beyond auditory processing alone. This review examines the 45-year history of MMN from the perspective of psychiatric researchers and discusses current advances in computational and translational research on MMN, summarizing the current understanding of the MMN generation mechanism.

View Article and Find Full Text PDF
Article Synopsis
  • - The study investigates the link between rare copy number variations (CNVs) in synaptic genes and bipolar disorder (BD) in a Japanese population, using genome hybridization techniques on nearly 2,000 BD patients and 2,760 controls.
  • - Results indicate a strong association between the RNF216 gene and BD, with significant findings also related to postsynaptic membrane components, suggesting these genetic factors contribute to BD risk.
  • - The findings enhance understanding of BD's genetic underpinnings, highlighting the importance of CNVs in gene regions that may influence the disorder's development.
View Article and Find Full Text PDF
Article Synopsis
  • Aberrant salience processing is a potential mechanism that might explain psychiatric symptoms in schizophrenia, as seen in abnormal gaze patterns when individuals view images.
  • A study involving 1012 participants compared gaze behaviors, revealing that individuals with schizophrenia had gaze trajectories influenced more by visual salience than healthy individuals, particularly in orientation salience.
  • The research also indicated that abnormal salience processing varies across different psychiatric disorders, with schizophrenia showing the strongest effects, followed by bipolar disorder, major depressive disorder, and autism spectrum disorder, linking salience abnormalities to the severity of psychotic symptoms.
View Article and Find Full Text PDF
Article Synopsis
  • Autism spectrum disorder (ASD) is a complex lifelong condition, and this study aimed to create a classifier using resting-state fMRI from a large group of 730 Japanese adults to identify its neural and biological features.
  • The developed classifier showed effectiveness in differentiating individuals with ASD from neurotypical controls across various countries, including the US and Belgium, and it also applied to children and adolescents.
  • Importantly, the study found that the classifier identified crucial functional connections related to social interaction difficulties and neurotransmitter activity, and it linked ASD with similar neurobiological factors seen in ADHD and schizophrenia, enhancing understanding of related mental health disorders.
View Article and Find Full Text PDF

Direct Collapse Supermassive Black Holes from Relic Particle Decay.

Phys Rev Lett

August 2024

Department of Physics and Astronomy, University of California Los Angeles, Los Angeles, California 90095-1547, USA.

We investigate the formation of high-redshift supermassive black holes (SMBHs) via the direct collapse of baryonic clouds, where the unwanted formation of molecular hydrogen is successfully suppressed by a Lyman-Werner (LW) photon background from relic particle decay. We improve on existing studies by dynamically simulating the collapse, accounting for the adiabatic contraction of the DM halo, as well as the in situ production of the LW photons within the cloud which reduce the impact of the cloud's shielding. We find a viable parameter space where the decay of either some of the dark matter or all of a subdominant decaying species successfully allows direct collapse of the cloud to a SMBH.

View Article and Find Full Text PDF
Article Synopsis
  • Genetically encoded fluorescent sensors are being enhanced to assess cortical activity in non-human primates, allowing for detailed measurements of brain dynamics.* -
  • The Automated Robotic Virus injection System (ARViS) was developed to facilitate the precise delivery of biosensors across different cortical areas, utilizing image recognition to avoid blood vessels and enabling precise micropipette insertion.* -
  • ARViS demonstrated its effectiveness by successfully injecting biosensors into 266 sites in a marmoset's frontoparietal cortex and enabling advanced imaging techniques to observe cortical activity.*
View Article and Find Full Text PDF

Dynamic and Static Workout of In Vitro Skeletal Muscle Tissue through a Weight Training Device.

Adv Healthc Mater

December 2024

Mechano-Informatics, Graduate School of Information Science and Technology, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8656, Japan.

Enhancing muscle strength through workouts is a key factor in improving physical activity and maintaining metabolic profiles. The controversial results concerning the impacts of weight training often arise from clinical experiments that require controlled experimental conditions. In this study, a weight training system for a muscle development model is presented, which is capable of performing weight training motions with adjustable weight loads.

View Article and Find Full Text PDF
Article Synopsis
  • The 2022 global outbreak of mpox (formerly known as monkeypox) and its 2023 sporadic cases underscored the need for effective nonpharmaceutical interventions like case isolation.
  • A new modeling framework was created to analyze how long infected individuals remain infectious based on their viral load, revealing that viral shedding can vary significantly from 23 to 50 days.
  • The study found that while existing symptom-based isolation guidelines are generally effective, switching to a testing-based rule could minimize unnecessary isolation after individuals are no longer infectious.
View Article and Find Full Text PDF
Article Synopsis
  • Sensorimotor learning involves changes in neuronal activity in the premotor (PM) and primary motor cortex (M1) of primates, as studied through calcium imaging in common marmosets during a reaching task.
  • During the learning process, the dorsorostral PM demonstrated earlier peak activity compared to the dorsocaudal PM and M1, with increased reaction times in pull trials closely correlating with PMdr activity.
  • The dorsocaudal PM and M1 maintained stable representation of movements, while PMdc neurons adjusted their preferred movement direction based on push trial performance, highlighting the transition from dynamic tuning in PMdc to stable motor representation in M1 during learning.
View Article and Find Full Text PDF
Article Synopsis
  • Neuroimaging databases for neuro-psychiatric disorders provide valuable data for researchers to explore diseases, develop machine learning models, and redefine understanding of these conditions.* ! -
  • A review identified 42 global MRI datasets totaling 23,293 samples from patients with various disorders, including mood, developmental, schizophrenia, Parkinson's, and dementia.* ! -
  • Improved governance and addressing technical issues of these databases are essential for sharing data across borders, aiding in understanding, diagnosing, and creating early interventions for neuro-psychiatric disorders.* !
View Article and Find Full Text PDF

Correlations of brain structure with the social behavior of 15q11-13 duplication mice, an animal model of autism.

Neurosci Res

December 2024

Department of Neuropsychiatry, Graduate School of Medicine, The University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo 113-8655, Japan. Electronic address:

Article Synopsis
  • Duplication of chromosome 15q11-13 is linked to autism spectrum disorder (ASD) and was studied in a mouse model known as 15q dup mice.
  • The study involved behavioral tests for anxiety and social interactions, alongside MRI scans, to explore the connection between brain structure and behavior in these mice.
  • Findings showed that 15q dup mice exhibited higher anxiety levels and varied social behaviors, with a correlation found between lower sociability and reduced gray matter in a specific brain region, highlighting the complexities of ASD's behavioral diversity.
View Article and Find Full Text PDF