36 results match your criteria: "University of Karachi Karachi-75270 Pakistan.[Affiliation]"

Riboflavin (RF) sensitized photooxidation of pyridoxine HCl (PD) in the pH range of 2.0-12.0 has been carried out under UV and visible irradiation in aerobic and anaerobic conditions.

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A rapid synthesis of a pH-stable magnetic nano-sensor (iron oxide nanoparticles, Fe-NPs, ∼2.6 nm) encapsulated with 3-aminobenzoic acid (3-ABA) was achieved. 3-ABA was prepared for the first time through the reduction of 3-nitrobenzoic acid (3-NBA) in the presence of HCl and tin.

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Ubiquitin-specific protease-7 (USP7) is an important drug target as it regulates multiple proteins and genes (such as MDM2 and p53) with roles in cancer progression. Its inhibition can hinder the function of oncogenes, increase tumor suppression, and enhance immune response. The current study was designed to express USP7 in a prokaryotic system, followed by screening of small molecules against it using biophysical methods, primarily STD-NMR technique.

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Insights into the molecular interactions between urease subunit gamma from MRSA and drugs: .

RSC Adv

September 2024

Dr Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi Karachi-75270 Pakistan

Article Synopsis
  • Antibiotic resistance in Methicillin Resistant Staphylococcus aureus (MRSA) necessitates the search for new drug targets, particularly focusing on urease subunit gamma, a key virulence factor in MRSA that helps bacteria survive under acidic conditions.
  • The study involved cloning, purifying, and testing 100 US-FDA approved drugs against urease subunit gamma using STD-NMR spectroscopy, with 15 drugs showing significant interactions.
  • The research evaluated the drugs' effects on the thermal stability of urease and their ability to inhibit urease activity, suggesting their potential as therapeutic agents against MRSA, warranting further investigation.
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  • * Hydrogels demonstrate promising properties for wound dressings due to their extracellular matrix-like characteristics and ability to incorporate beneficial ingredients, like starch and α-terpineol, which can aid healing and reduce inflammation.
  • * The study found that α-terpineol-loaded polyvinyl alcohol/tapioca starch hydrogels, developed through electron beam crosslinking, effectively enhanced wound healing in rat models by improving closure rates, tissue reorganization, and overall skin recovery, while showing good biocompatibility and no inflammatory response.
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Tolfenamic acid (TA) is a non-steroidal anti-inflammatory drug that was studied for its photodegradation in aqueous (pH 2.0-12.0) and organic solvents (acetonitrile, methanol, ethanol, 1-propanol, 1-butanol).

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Article Synopsis
  • - A new, efficient one-pot method for creating 2-aroylbenzo[]thiophen-3-ols is developed using 2-mercaptobenzoic acid and various aryl bromomethyl ketones with triethylamine as a catalyst.
  • - The reaction likely involves a nucleophilic attack by the sulfhydryl group on the bromomethyl ketone, resulting in a cyclization that produces the target compound in high yield.
  • - This process also allows for the introduction of an alkyne at the 3-hydroxy position, leading to the formation of unique benzothiophene-triazole hybrids, expanding possibilities for new biological and pharmaceutical discoveries.
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In the current study, a novel compound, bis(3-(2-benzo[][1,2,3]triazol-2-yl)-2-(prop-2-yn-1-yloxy)-5-(2,4,4-trimethylpentan-2-yl)phenyl)methane (TAJ1), has been synthesized by the reaction of 6,6'-methylenebis(2-(2-benzo[][1,2,3]triazol-2-yl)-4-(2,4,4-trimethylpentan-2-yl)phenol) (1), propargyl bromide (2) and potassium carbonate. Spectroscopic (FTIR, H-NMR, C-NMR) and single-crystal assays proved the structure of the synthesized sample. XRD analysis confirmed the structure of the synthesized compound, showing that it possesses two aromatic parts linked a -CH carbon with a bond angle of 108.

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Novel epoxy-terminated macromonomers and their polymerization for synthesis of bottle-brush type amphiphilic block copolymers.

RSC Adv

September 2023

Third World Center for Science and Technology, H. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences (ICCBS), University of Karachi Karachi 75270 Pakistan

Architecture of polymers has vital implications for their physical properties and applications. In this study, synthesis of a series of novel epoxy-terminated macromonomers namely Ep-DEGMME, Ep-TEGMME, Ep-EGMEE, Ep-EGMBE, and Ep-EGMHE is reported. The synthesized macromonomers vary in number of ethylene oxide units and length of the alkyl group.

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The present review focuses on the widely used graphitic carbon nitride (g-CN)-tungsten oxide (WO) nanocomposite in photocatalytic applications. These catalysts are widely employed due to their easy preparation, high physicochemical stability, nontoxicity, electron-rich properties, electronic band structure, chemical stability, low cost, earth-abundance, high surface area, and strong absorption capacity in the visible range. These sustainable properties make them predominantly attractive and unique from other photocatalysts.

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The modification of natural products is one of the key areas of synthetic organic chemistry for obtaining valuable chemical building blocks that have medicinal significance. In this study, lauric acid-based hydrazones, namely ()-'-(2-nitrobenzylidene)dodecanehydrazide (NBDH), ()-'-(naphthalen-1-ylmethylene)dodecanehydrazide (NMDH), and ()-'-(4-fluorobenzylidene)dodecanehydrazide (FBDH), were synthesized and characterized using spectroscopic techniques. The newly synthesized lauric acid-based hydrazones were screened for their anticancer and antioxidant potential.

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The rapid spread of dengue virus has now emerged as a major health problem worldwide, particularly in tropical and sub-tropical regions. Nearly half of the human population is at risk of getting infection. Among the proteomes of dengue virus, nonstructural protein NS5 is conserved across the genus .

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Dynamics of metal binding and mutation in yybP-ykoY riboswitch of .

RSC Adv

June 2022

Third World Center for Science and Technology, H. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi Karachi-75270 Pakistan +92-21-348-19018 +92-21-99261774.

Riboswitch is a regulatory segment of messenger RNA (mRNA), which by binding to various cellular metabolites regulates the activity of mRNA modulating transcription, translation, alternative splicing, and stability of the mRNA. yybP-ykoY riboswitch of , which is present upstream of the yoaB gene, functions as a Mn-specific genetic ON-switch, and modulates expression of proteins which are significant for Mn homeostasis. The P1.

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In this study we report an environmentally friendly, facile and straightforward sonochemical synthetic strategy for a CoO/GO nanocomposite using ,'-bis(salicylidene)ethylenediaminocobalt(ii) as a precursor and graphene oxide sheets as an immobilization support for CoO nanoparticles. The synthesis was facilitated by physical and chemical effects of cavitation bubbles. The synthesized nanocomposite was thoroughly characterized for its composition and morphology using Fourier transform infrared spectroscopy (FTIR), Energy dispersive X-ray spectroscopy (EDS), Scanning electron microscopy (SEM), UV-visible, Raman and X-ray diffraction spectroscopy (XRD), The results show CoO nanoparticles of 10 nm (SD 3 nm) were prepared on well exfoliated sheets of GO.

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A combination of molecular docking and molecular dynamics simulation (250 ns) has been carried out to study the interaction of stilbenoid trimer compounds with the SIRT1 enzyme as the target protein. SIRT1 expression regulates cellular stress responses that lead to the development of cancer. Redocking showed a good native ligand pose with an RMSD value of 1.

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The applications of solid support catalysts in catalyzing organic reactions are well-evident. In the present study, we explored a transition metal fluoride (FeF) adsorbed on molecular sieves (4 Å) as a solid support catalyst for the preparation of sulfonamides 3a-3o. The solid support catalyst was characterized X-ray diffraction and AFM analysis.

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Structural transformation of methasterone with and .

RSC Adv

March 2022

H. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Sciences, University of Karachi Karachi-75270 Pakistan

Article Synopsis
  • - An anabolic steroid, methasterone, was transformed by two fungi, resulting in six new chemical products that were characterized using techniques like MS and NMR.
  • - Among the products, methasterone exhibited strong anti-inflammatory properties, while some metabolites showed moderate inhibition of nitric oxide production without being toxic to various human cell lines.
  • - Methasterone was found to be cytotoxic to normal human cells, but its transformed metabolites were non-cytotoxic and showed no harmful effects against specific cancer cell lines.
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To the best of our knowledge, this is the first molecular dynamics simulation study on the dimeric form of the LuxS enzyme from to evaluate its structural and dynamical properties including the dynamics of the interface formed by the two monomeric chains of the enzyme. The dynamics of the interfacial region were investigated in terms of inter-residual contacts and the associated interface area of the enzyme in its ligand-free and ligand-bound states which produced characteristics contrast in the interfacial dynamics. Moreover, the binding patterns of the two inhibitors (RHC and KRI) to the enzyme forming two different enzyme-ligand complexes were analyzed which pointed towards a varying inhibition potential of the inhibitors as also revealed by the free energies of ligand binding.

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Left ventricular systolic dysfunction (LVSD) is common in patients with pre-existing ischemic heart disease (IHD) and myocardial infarction. An untargeted proteomic approach is used to improve the understanding of the molecular mechanisms associated with LVSD and to find out potential proteomic signatures in pericardial fluid. The pericardial fluid of IHD ( = 45) patients was grouped into two categories according to the left ventricular ejection fraction, LVEF ≥45 ( = 33) and LVEF <45 ( = 12), and analyzed by using nano-liquid chromatography-mass spectrometry (nano-LC-MS/MS) technique.

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Metals are essential cofactors that play a crucial role in heart function at the cell and tissue level. Information regarding the role of metals in the pericardial fluid and its ionome in ischemic heart disease (IHD) is limited. We aimed to determine the association of elements in pericardial fluid and serum samples of IHD patients and their correlation with systolic and diastolic function.

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Adaptation mechanism of mango fruit ( L. cv. Chaunsa White) to heat suggest modulation in several metabolic pathways.

RSC Adv

September 2020

Jamil-ur-Rahman Center for Genome Research, Dr Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi Karachi-75270 Pakistan

Climate change is becoming a global problem because of its harmful effects on crop productivity. In this regard, it is crucial to carry out studies to determine crops' response to heatwave stress. Response molecular mechanisms during the development and ripening of mango fruit ( L.

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The current study is aimed at synthesizing and characterizing magnetic cobalt-iron oxide nanoparticles (CoFeNPs) functionalized with two different amino reagents, hydrazine and dodecylamine, resulting in CoFeNPs1 and CoFeNPs2, respectively. Both types of cobalt-ferrite nanoparticles were investigated for the removal of six different negatively charged azoic dyes (Amaranth, Acid Orange 7, Naphthol Blue Black, Reactive Orange 16, Acid Orange 52 and Reactive Red-P2B) from water, and their removal efficiency was compared as a function of different factors such as time, type of anchored amine, size of CoFeNPs and structure of the dye. CoFeNPs were successfully characterized by FT-IR spectra, AFM, SEM-EDS, surface charge (ζ-potential) and thermal analysis.

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The present study reports the biotransformation of an anabolic-androgenic steroid (AAS) drostanolone heptanoate (1) by using two microbial cultures, , and . Fermentation of 1 with yielded five new transformed products 2-6, while with it afforded two new 7-8, and two known 9-10 metabolites. The main sites of hydroxylation in the steroidal skeleton of 1 were at C-5, C-7, C-11, C-14, C-15, and C-20, hydrolysis of the ester moiety at C-17, and reduction of the carbonyl group at C-3.

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This is the first study on the photolysis of carboxymethylflavin (CMF), an intermediate in the photolysis of riboflavin (RF). CMF is photodegraded by removal of side-chain to lumichrome (LC) in acid solution and to LC and lumiflavin (LF) in alkaline solution. It also undergoes alkaline hydrolysis to 1,2-dihydro-1-methyl-2-keto-3-quinoxaline carboxylic acid (KA) and 1,2,3,4-tetrahydro-1-methyl-2,3-dioxoquinoxaline (DQ) by cleavage of isoalloxazine ring.

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