4,422 results match your criteria: "University of California at Berkeley.[Affiliation]"

Assessment of nutrient storage and translocation in winter harvested Typha latifolia from free-water surface treatment wetland mitigating diffuse agricultural pollution.

Sci Total Environ

January 2025

Department of Geography, Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia; Department of Environmental Science, Policy and Management, University of California at Berkeley, USA.

Wetland macrophytes play a critical role in the performance of treatment wetlands (TWs), primarily through nutrient uptake. However, this retention is temporary, as nutrients are released back into the water upon the decomposition of plant litter. The removal of stored nutrients from TWs can be efficiently achieved by harvesting plants during the peak of the growing season, albeit with significant ecological disturbance.

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Towards measurements of absolute membrane potential in Bacillus subtilis using fluorescence lifetime.

Biophys Rep (N Y)

January 2025

UCLA-DOE Institute for Genomics and Proteomics, Department of Biological Chemistry, University of California at Los Angeles, Los Angeles, CA 90095, USA,; Department of Chemistry and Biochemistry, University of California at Los Angeles, Los Angeles, CA 90095, USA,; Department of Physiology, University of California at Los Angeles, Los Angeles, CA 90095, USA,; California Nano Systems Institute, University of California at Los Angeles, Los Angeles, CA 90095, USA,; Department of Physics, Institute for Nanotechnology and Advanced Materials, Bar-Ilan University, Ramat-Gan 52900, Israel.

Membrane potential (MP) changes can provide a simple readout of bacterial functional and metabolic state or stress levels. While several optical methods exist for measuring fast changes in MP in excitable cells, there is a dearth of such methods for absolute and precise measurements of steady-state membrane potentials (MPs) in bacterial cells. Conventional electrode-based methods for the measurement of MP are not suitable for calibrating optical methods in small bacterial cells.

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The chirality of magnons, exhibiting left- and right-handed polarizations analogous to the counterparts of spin-up and spin-down, has emerged as a promising paradigm for information processing. However, the potential of this paradigm is constrained by the controllable excitation and transmission of chiral magnons. Here, the magnon transmission is explored in the GdFeO/NiO/Pt structures.

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Generative models have diverse applications, including language processing and birdsong analysis. In this study, we demonstrate how a statistical test, designed to prevent overgeneralization in sequence generation, can be used to infer minimal models for the syllable sequences in Bengalese finch songs. We focus on the partially observable Markov model (POMM), which consists of states and the probabilistic transitions between them.

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X-ray footprinting mass spectrometry (XFMS) is a structural biology method that uses broadband X-rays for hydroxyl radical labeling to map protein interactions and conformation in solution. However, while XFMS alone provides important structural information on biomolecules, as we move into the era of the interactome, hybrid methods are becoming increasingly necessary to gain a comprehensive understanding of protein complexes and interactions. Toward this end, we report the development of the first synergetic application of inline and real-time fluorescent spectroscopy at the Advanced Light Source's XFMS facility to study local protein interactions and global conformational changes simultaneously.

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Cross-national comparisons of dementia prevalence are essential for identifying unique determinants and cultural-specific risk factors, but methodological differences in dementia classification across countries hinder global comparisons. This study maps the 10/66 algorithm for dementia classification, widely used and validated in low- and middle-income countries (LMICs), to the U.S.

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Non-catalytic glycerol dehydrogenation to dihydroxyacetone using needle-in-tube dielectric barrier discharge plasma.

Sci Rep

December 2024

Center of Excellence in Catalysis and Catalytic Reaction Engineering, Department of Chemical Engineering, Faculty of Engineering, Chulalongkorn University, Bangkok, 10330, Thailand.

Glycerol, a by-product of biodiesel production, could be converted into various value-added products. This work focuses on its dehydrogenation to dihydroxyacetone (DHA), which is mainly used in the cosmetics industry. While several methods have been employed for DHA production, some necessitate catalysts and involve harsh reaction conditions as well as long reaction times.

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Background: Air pollution may impair child growth and cognitive development, with potential markers including birth length and head circumference.

Methods: The Household Air Pollution Intervention Network (HAPIN) trial was an open label multi-country-randomized controlled trial, with 3200 pregnant women aged 18-34 years (9-19 weeks of gestation) randomly assigned in a 1:1 ratio to receive liquefied petroleum gas (LPG) stove intervention compared to women continuing to cook with solid fuels for 18 months. Particulate matter ≤ 2.

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Suture zones, speciation, and evolution.

Evolution

December 2024

Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity, Center for Integrative Biodiversity Discovery, Invalidenstraße 43, 10115, Berlin, Germany.

In the more than 50 years since the initial conceptualization of the suture zone, little work has been done to take full advantage of the comparative capability of these geographic regions. During this time, great advances have been made in hybrid zone research that have provided invaluable insight in speciation and evolution. Hybrid zones have long been recognized to be "windows to the evolutionary process".

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Irreversible dynamics of a continuum driven by active matter.

Phys Rev E

November 2024

Department of Physics, Duke University, Box 90305 Durham, North Carolina 27708-0305, USA.

We study the fluctuational behavior of overdamped elastic filaments (e.g., strings or rods) driven by active matter which induces irreversibility.

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Molecular dynamics (MD) simulations of the collisional dynamics of the coronene-acepyrene and coronene radical-acepyrene pairs have been carried out to investigate the size effect of monomers of polycyclic aromatic hydrocarbons (PAH) on their non-equilibrium dimerization. The results compared to the previous MD simulations of the smaller pyrene-acepyrene and pyrenyl-acepyrene systems corroborate the non-equilibrium hypothesis of crosslinking PAH dimerization enhanced by physical interaction between the monomers. The phenomenon of inelastic collisional dynamics responsible for non-equilibrium van der Waals dimerization, which fosters a covalent bond formation between the monomers, amplifies with increasing PAH size.

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Phase transitions in anisotropic turbulence.

Chaos

December 2024

Department of Physics, University of California at Berkeley, Berkeley, California 94720, USA.

Turbulence is a widely observed state of fluid flows, characterized by complex, nonlinear interactions between motions across a broad spectrum of length and time scales. While turbulence is ubiquitous, from teacups to planetary atmospheres, oceans, and stars, its manifestations can vary considerably between different physical systems. For instance, three-dimensional turbulent flows display a forward energy cascade from large to small scales, while in two-dimensional turbulence, energy cascades from small to large scales.

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Undernutrition and antibody response to measles, tetanus and Haemophilus Influenzae type b (Hib) vaccination in pre-school south African children: The VHEMBE birth cohort study.

Vaccine

December 2024

Department of Epidemiology, Biostatistics and Occupational Health, School of Population and Global Health, Faculty of Medicine and Health Sciences, McGill University, Montreal, Quebec, Canada.

Background: Under-vaccination is undoubtedly driving recent worldwide measles outbreaks, but undernutrition may also be playing a role in low- and middle-income countries. Studies have shown reduced immune response to vaccines in undernourished children but few have followed children beyond infancy, when they are more likely to be exposed to infectious diseases.

Methods: In the Venda Health Examination of Mothers, Babies and the Environment (VHEMBE) South African birth cohort study, we examined the relationship between undernutrition, as measured by stunting and other growth measures, and vaccine-specific serum antibody level to three different vaccine types: measles, tetanus and Haemophilus influenzae type b (Hib).

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Acid Catalysis Mediated by Aqueous Hydronium Ions Formed by Contacting Zeolite Crystals with Liquid Water.

J Am Chem Soc

December 2024

Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China.

Zeolites are crystalline microporous aluminosilicates widely used as solid acids in catalytic routes to clean and sustainable energy carriers and chemicals from biogenic and fossil feedstocks. This study addresses how zeolites act as weak polyprotic acids and dissociate to form extra-crystalline hydronium (HO) ions in liquid water. The extent of their dissociation depends on the energy required to form the conjugate framework anions, which becomes unfavorable as the extent of dissociation increases intracrystalline charge densities because repulsive interactions ultimately preclude the detachment of all protons as catalytically relevant HO(aq) ions.

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Article Synopsis
  • - Transcription occurs in bursts, with gene promoters toggling between active and inactive states, and enhancers play a crucial role by affecting how often, how long, and how intensely these bursts happen in animal development.
  • - Research shows that various enhancers can produce different levels of transcription using similar burst-control techniques, including increasing burst frequency and amplitude while keeping duration steady.
  • - A study comparing transcription patterns in natural and artificial contexts revealed that enhancers maintain consistent bursting strategies, suggesting a shared molecular mechanism influencing these patterns across different regulatory environments.
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Reactive oxygen species control protein degradation at the mitochondrial import gate.

Mol Cell

December 2024

Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720, USA; Howard Hughes Medical Institute, University of California at Berkeley, Berkeley, CA, USA; California Institute for Quantitative Biosciences (QB3), University of California at Berkeley, Berkeley, CA 94720, USA. Electronic address:

While reactive oxygen species (ROS) have long been known to drive aging and neurodegeneration, their persistent depletion below basal levels also disrupts organismal function. Cells counteract loss of basal ROS via the reductive stress response, but the identity and biochemical activity of ROS sensed by this pathway remain unknown. Here, we show that the central enzyme of the reductive stress response, the E3 ligase Cullin 2-FEM1 homolog B (CUL2), specifically acts at mitochondrial TOM complexes, where it senses ROS produced by complex III of the electron transport chain (ETC).

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High-order harmonic generation (HHG) in solids opens new frontiers in ultrafast spectroscopy of carrier and field dynamics in condensed matter, picometer resolution structural lattice characterization and designing compact platforms for attosecond pulse sources. Nanoscale structuring of solid surfaces provides a powerful tool for controlling the spatial characteristics and efficiency of the harmonic emission. Here we study HHG in a prototypical phase-change material GeSbTe (GST).

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Article Synopsis
  • Encapsulation of materials in nanotubes is a key technique in nanotechnology that creates unique one-dimensional (1D) structures with enhanced functionality.
  • Materials trapped inside nanotubes can form low-dimensional polymorphs that have different electrical, optical, and magnetic properties than their bulk counterparts.
  • Recent advancements in this field involve various materials like organic molecules and metal compounds, as well as a focus on how geometrical confinement within nanotubes influences their atomic structure and potential applications in electronics and energy storage.
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Plants continuously respond to changing environmental conditions to prevent damage and maintain optimal performance. To regulate gas exchange with the environment and to control abiotic stress relief, plants have pores in their leaf epidermis, called stomata. Multiple environmental signals affect the opening and closing of these stomata.

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By combining in situ X-ray diffraction, Zr K-edge X-ray absorption spectroscopy and H and C nuclear magnetic resonance (NMR) spectroscopy, we show that the properties of the final MOF are influenced by HO and HCl via affecting the nucleation and crystal growth at the molecular level. The nucleation implies hydrolysis of monomeric zirconium chloride complexes into zirconium-oxo species, and this process is promoted by HO and inhibited by HCl, allowing to control crystal size by adjusting HO/Zr and HCl/Zr ratios. The rate-determining step of crystal growth is represented by the condensation of monomeric and oligomeric zirconium-oxo species into clusters, or nodes, with the structure identical to that in secondary building units (SBU) of UiO-66 framework.

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Moiré superlattices of semiconducting transition metal dichalcogenide heterobilayers are model systems for investigating strongly correlated electronic phenomena. Specifically, WSe/WS moiré superlattices have emerged as a quantum simulator for the two-dimensional extended Hubbard model. Experimental studies of charge transport have revealed correlated Mott insulator and generalized Wigner crystal states, but spin transport of the moiré heterostructure has not yet been sufficiently explored.

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Article Synopsis
  • The SALURBAL study, initiated in 2017, aims to examine urban health determinants and effective policies across cities in Latin America, filling a research gap on health in lower and middle income countries.
  • It has four main objectives: analyzing social and physical factors impacting health, assessing the effects of urban policies, employing systems approaches for deeper understanding, and fostering discussions on health drivers and policy implications.
  • This review updates on SALURBAL's data resource, collaborative methods, challenges encountered, and highlights opportunities for enhancing policy-relevant research in urban health moving forward.
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We address the problem of how to estimate a phylogenetic network when given single-nucleotide polymorphisms (i.e., SNPs, or bi-allelic markers that have evolved under the infinite sites assumption).

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The 26S proteasome targets many cellular proteins for degradation during general homeostasis, protein quality control, and the regulation of vital processes. A broad range of proteasome-interacting cofactors thereby modulates these functions and aids in substrate degradation. Here, we solved several high-resolution structures of the redox active cofactor TXNL1 bound to the human 26S proteasome at saturating and sub-stoichiometric concentrations by time resolved cryo-EM.

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Automating life science labs at the single-cell level through precise ultrasonic liquid sample ejection: PULSE.

Microsyst Nanoeng

November 2024

Department of Mechanical Engineering and Materials Science, Duke University, Durham, NC, 27708, USA.

Laboratory automation technologies have revolutionized biomedical research. However, the availability of automation solutions at the single-cell level remains scarce, primarily owing to the inherent challenges of handling cells with such small dimensions in a precise, biocompatible manner. Here, we present a single-cell-level laboratory automation solution that configures various experiments onto standardized, microscale test-tube matrices via our precise ultrasonic liquid sample ejection technology, known as PULSE.

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