184 results match your criteria: "Universitetskaya emb. 7-9[Affiliation]"

Amyloid Fibrils of the s36 Protein Modulate the Morphogenesis of Eggshell.

Int J Mol Sci

November 2024

St. Petersburg Branch, Vavilov Institute of General Genetics, Russian Academy of Sciences, Universitetskaya Emb. 7/9, 199034 St. Petersburg, Russia.

is the oldest classic model object in developmental genetics. It may seem that various structures of the fruit fly at all developmental stages have been well studied and described. However, recently we have shown that some specialized structures of the eggshell contain an amyloid fibril network.

View Article and Find Full Text PDF

Time-resolved fluorescence of ANS dye as a sensor of proteins LLPS.

Biochem Biophys Res Commun

January 2025

Laboratory of Structural Dynamics, Stability and Folding of Proteins, Institute of Cytology, Russian Academy of Sciences, 4 Tikhoretsky Ave., 194064, St. Petersburg, Russia. Electronic address:

The explosive growth in the number of works addressing the phase separation of intrinsically disordered proteins has driven both the development of new approaches and the optimization of existing methods for biomolecular condensate visualization. In this work, we studied the potential use of the fluorescent dye ANS as a sensor for liquid-liquid phase separation (LLPS), focusing on visualizing condensates formed by the stress-granules scaffold protein G3BP1. Using fluorescence lifetime imaging microscopy (FLIM), we demonstrated that ANS can accumulate in RNA-induced G3BP1 condensates in aqueous solutions, but not in G3BP1 condensates formed under macromolecular crowding conditions in highly concentrated PEG solutions.

View Article and Find Full Text PDF

Semiconductor nanowires are known for their unusual geometry, providing unique electronic and optical properties. Substrates with vertical nanowires have highly non-uniform surfaces, which are attractive in terms of the study of live cells that can interact and be labeled with the wires. Despite several previous works studying cells cultivated over nanowires, questions regarding cell rupture and interaction with the wires remain open.

View Article and Find Full Text PDF
Article Synopsis
  • The study investigates heme models of iron(II) with varying ligand counts and spin states using advanced quantum chemistry methods.
  • It examines how the iron-ligand bond characteristics vary based on the spin state of the iron atom and the number of ligands attached.
  • The findings reveal that semi-coordination with imidazole allows reversible oxygen binding, with triplet states being energetically favorable for adding additional ligands, while minimal energy barriers enable electron state interconversion in six-coordinated complexes.
View Article and Find Full Text PDF

Grape is one of the most economically significant berry crops. Owing to the biological characteristics of grapes, such as the long juvenile period (5-8 years), high degree of genome heterozygosity, and the frequent occurrence of inbreeding depression, homozygosity during crossbreeding leads to loss of varietal characteristics and viability. CRISPR/Cas editing has become the tool of choice for improving elite technical grape varieties.

View Article and Find Full Text PDF

Biocompatibility and customizability: Expanding possibilities with 3D printed guide cannulas.

J Neurosci Methods

October 2024

Research Center of Neurology, Volokolamskoye Shosse 80, Moscow 125367, Russia; Institute of Translational Biomedicine, Saint Petersburg State University,  Universitetskaya Emb. 7/9, St. Petersburg 199034, Russia.

Background: Intracerebral cannulation bypasses the blood-brain barrier, and is frequently used for targeted drug delivery to specific brain structures. Despite the availability of brain infusion kits and manual injections without cannulation, the traditional design of guide cannulas continues to be utilized in research. Several protocols describing guide cannula manufacture from stainless steel needles have been published previously.

View Article and Find Full Text PDF

Pursuing of straightforward and cost-effective methods for synthesizing high-performance anode materials for lithium-ion batteries is a topic of significant interest. This study elucidates a one-step synthesis approach for a conversion composite using glow discharge in a nickel formate solution, yielding a composite precursor comprising metallic nickel, nickel hydroxide, and basic nickel salts. Subsequent annealing of the precursor facilitated the formation of the Ni@NiO composite, exhibiting exceptional electrochemical properties as anode material in Li-ion batteries: a capacity of approximately 1000 mAh g, cyclic stability exceeding 100 cycles, and favorable rate performance (200 mAh g at 10 A g).

View Article and Find Full Text PDF

Fetal hypoxia and maternal stress frequently culminate in neuropsychiatric afflictions in life. To replicate this condition, we employed a model of prenatal severe hypoxia (PSH) during days 14-16 of rat gestation. Subsequently, both control and PSH rats at 3 months old were subjected to episodes of inescapable stress to induce learned helplessness (LH).

View Article and Find Full Text PDF

The intricate relationships between parasites and hosts encompass a wide range of levels, from molecular interactions to population dynamics. Parasites influence not only the physiological processes in the host organism, but also the entire ecosystem, affecting mortality of individuals, the number of offspring through parasitic castration, and matter and energy cycles. Understanding the molecular mechanisms that govern host-parasite relationships and their impact on host physiology and environment remains challenging.

View Article and Find Full Text PDF

Von-Hippel Lindau protein amyloid formation. The role of GST-tag.

Biochem Biophys Res Commun

June 2024

Laboratory of Structural Dynamics, Stability and Folding of Proteins, Institute of Cytology, Russian Academy of Sciences, 4 Tikhoretsky Ave., 194064, St. Petersburg, Russia. Electronic address:

In the last decade, much attention was given to the study of physiological amyloid fibrils. These structures include A-bodies, which are the nucleolar fibrillar formations that appear in the response to acidosis and heat shock, and disassemble after the end of stress. One of the proteins involved in the biogenesis of A-bodies, regardless of the type of stress, is Von-Hippel Lindau protein (VHL).

View Article and Find Full Text PDF

Cardiotonic steroids (CTSs), such as digoxin, are used for heart failure treatment. However, digoxin permeates the brain-blood barrier (BBB), affecting central nervous system (CNS) functions. Finding a CTS that does not pass through the BBB would increase CTSs' applicability in the clinic and decrease the risk of side effects on the CNS.

View Article and Find Full Text PDF

The Northeast Asian endemic species of lichen-forming fungus is herein discussed in the global context of biogeography and phylogeny of the group. The name has been erroneously used by lichenologists for spp. from high latitudes or altitudes worldwide, as there are omphalodisc apothecia and rough "crystals" of a necral layer on the upper surface.

View Article and Find Full Text PDF

Tea has historically been one of the most popular beverages, and it is currently an economically significant crop cultivated in over 50 countries. The Northwestern Caucasus is one of the northernmost regions for industrial tea cultivation worldwide. The domestication of the tea plant in this region took approximately 150 years, during which plantations spreading from the Ozurgeti region in northern Georgia to the southern city of Maykop in Russia.

View Article and Find Full Text PDF

The quality of swans' nutrition at spring migration stopovers is important for their successful breeding. It is of great interest to study the differences in nutrition of different swan species when sharing the same habitat. Microscopic analysis of Cygnus olor, C.

View Article and Find Full Text PDF

Photosensitized isomerization of resveratrol: Evaluation of energy and electron transfer pathways.

Free Radic Biol Med

April 2024

Instituto de Investigaciones Fisicoquímicas Teóricas y Aplicadas (INIFTA), Departamento de Química, Facultad de Ciencias Exactas, Universidad Nacional de La Plata (UNLP), CCT La Plata-CONICET, Diagonal 113 y 64, 1900, La Plata, Argentina. Electronic address:

Resveratrol (3,5,4'-trihydroxystilbene, RSV) is a natural stilbene synthetized as trans-isomer in plants exposed to oxidative stress. In order to understand the mechanism involved during photosensitized degradation of trans-resveratrol, steady-state and time-resolved experiments were performed and compared with quantum-chemical calculations using density functional theory (DFT). Pterin (Ptr), a well-known photosensitizer, under UV-A radiation induces the oxidation of several biomolecules mainly through electron-transfer mechanisms.

View Article and Find Full Text PDF

Stress-granules, P-bodies, and cell aging: A bioinformatics study.

Biochem Biophys Res Commun

January 2024

Laboratory of Structural Dynamics, Stability and Folding of Proteins, Institute of Cytology, Russian Academy of Sciences, 4 Tikhoretsky Ave., 194064, St. Petersburg, Russia. Electronic address:

At the molecular level, aging is often accompanied by dysfunction of stress-induced membrane-less organelles (MLOs) and changes in their physical state (or material properties). In this work, we analyzed the proteins included in the proteome of stress granules (SGs) and P-bodies for their tendency to transform the physical state of these MLOs. Particular attention was paid to the proteins whose gene expression changes during replicative aging.

View Article and Find Full Text PDF
Article Synopsis
  • The study focuses on synthesizing and characterizing new alkyl-substituted NHC-stabilized pnictogenylboranes, where NHC refers to N-heterocyclic carbenes and pnictogens include elements like phosphorus and arsenic.
  • The researchers tested these compounds with nickel carbonyl complexes to assess their donor strength and steric properties using the Tolman Electronic Parameters (TEPs), comparing them to traditional ligands like phosphines.
  • Findings indicate that while these pnictogenyltrielanes are strong donors, their steric influence varies based on the organic substituents, with their donor strength comparable to NHCs but generally weaker than superbasic phosphines.
View Article and Find Full Text PDF

Legume plants have the ability to establish a symbiotic relationship with soil bacteria known as rhizobia. The legume-rhizobium symbiosis results in the formation of symbiotic root nodules, where rhizobia fix atmospheric nitrogen. A host plant controls the number of symbiotic nodules to meet its nitrogen demands.

View Article and Find Full Text PDF

NHC-Stabilized Mixed Group 13/14/15 Element Hydrides.

Chemistry

February 2024

Institute of Inorganic Chemistry, University of Regensburg, Universitätsstraße 31, 93053, Regensburg, Germany.

The syntheses of novel N-heterocyclic carbene (NHC) adducts of group 13, 14 and 15 element hydrides are reported. Salt metathesis reactions between NaPH and IDipp ⋅ GeH BH OTf (1) (IDipp=1,3-bis(2,6-diisopropylphenyl)imidazol-2-ylidene) led to mixtures of the two isomers IDipp ⋅ GeH BH PH (2 a) and IDipp ⋅ BH GeH PH (2 b); by altering the reaction conditions an almost exclusive formation of 2 b was achieved. Attempts to purify mixtures of 2 a and 2 b by re-crystallization from THF afforded a salt [IDipp ⋅ GeH BH  ⋅ IDipp][PHGeH BH PH BH GeH ] (4) that contains the novel anionic cyclohexyl-like inorganic heterocycle [PHGeH BH PH BH GeH ] .

View Article and Find Full Text PDF

The reaction behavior of [Cp*Fe(η -As )] (I) (Cp*=C Me ) towards carbenes and their heavier analogs was investigated. The reaction of I with NHCs (NHCs=N-heterocyclic carbenes) results in the first substitution products of polyarsenic ligand complexes by NHCs [Cp*Fe(η -As NHC)] (1 a: NHC=IMe=1,3,4,5-tetramethylimidazolin-2-ylidene, 1 b: NHC=IMes=1,3-bis(2,4,6-trimethylphenyl)-imidazolin-2-ylidene). In contrast, the reaction of I with CAAC ( CAAC=2,6-diisopropylphenyl)-4,4-diethyl-2,2-dimethyl-pyrrolidin-5-ylidene) leads to a fragmentation and the formation of an unprecedented As -sawhorse-type compound [As (As CAAC) ] (2).

View Article and Find Full Text PDF

A novel method for synthesizing 1,2,4-triazole- and tetrazole-containing 4-thiopyrano[2,3-]quinolines using a new combination of the thio-Michael and aza-Morita-Baylis-Hillman reactions was developed. Target compounds were evaluated for their cytotoxicities and antiviral activities against influenza A/Puerto Rico/8/34 virus in MDCK cells. The compounds showed low toxicity and some exhibited moderate antiviral activity.

View Article and Find Full Text PDF

Functional Modules in the Meristems: "Tinkering" in Action.

Plants (Basel)

October 2023

Department of Genetics and Biotechnology, Saint Petersburg State University, Universitetskaya Emb. 7/9, 199034 Saint Petersburg, Russia.

Article Synopsis
  • The organization of higher plants relies on a modular principle, particularly through structures known as meristems, which house stem cell pools and regulate growth and development.* -
  • The review analyzes two key molecular modules for meristem regulation: the WOX-CLAVATA module, crucial for meristem activity across types, and the florigen-activated complex, which guides phase transitions in shoot meristems.* -
  • It highlights the composition, functions, evolution, and potential applications of these modules in plant breeding and various developmental contexts.*
View Article and Find Full Text PDF

Plasma oxylipin profiles reflect Parkinson's disease stage.

Prostaglandins Other Lipid Mediat

April 2024

Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow 119992, Russia.

Derivatives of polyunsaturated fatty acids (PUFAs), also known as oxylipins, are key participants in regulating inflammation. Neuroinflammation is involved in many neurodegenerative diseases, including Parkinson's disease. The development of ultra-high-performance liquid chromatography-mass spectrometry (UPLC-MS/MS) facilitated the study of oxylipins on a system level, i.

View Article and Find Full Text PDF

Nitrogen-Activated CLV3/ESR-Related 4 (CLE4) Regulates Shoot, Root, and Stolon Growth in Potato.

Plants (Basel)

October 2023

Department of Genetics and Biotechnology, Saint Petersburg State University, Universitetskaya emb. 7/9, Saint Petersburg 199034, Russia.

In potato, high levels of nitrogen (N) can lead to excessive vegetative growth at the expense of tuber development, resulting in lower yield and poor-quality tubers. We found that () is expressed most strongly in the roots grown in N-rich media, and it positively regulates potato root growth under N-deficient conditions. We noted that StCLE4 functions as a negative regulator of normal shoot apex development similar to CLV3 in Arabidopsis.

View Article and Find Full Text PDF