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Refining Collective Coordinates and Improving Free Energy Representation in Variational Enhanced Sampling.

J Chem Theory Comput

June 2018

Department of Chemistry and Applied Biosciences , ETH Zurich , c/o USI Campus, Via Giuseppe Buffi 13 , Lugano , Ticino CH-6900 , Switzerland.

Article Synopsis
  • Collective variables are essential for enhanced sampling methods but finding effective ones can be difficult.
  • A recent study combined techniques to improve these variables from lower quality options, specifically in the context of metadynamics.
  • The new method was applied to alanine-3 in water, successfully extracting more accurate collective variables that detail the protein complex's free energy surface.
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