23 results match your criteria: "USDA-ARS-National Center for Agricultural Utilization Research[Affiliation]"

Aflatoxin contamination of corn is a major threat to the safe food and feed. The United States Federal Grain Inspection Service (FGIS) monitors commercial grain shipments for the presence of aflatoxin. A total of 146 were isolated from 29 highly contaminated grain samples to characterize the visual phenotypes, aflatoxin-producing potential, and genotypes to explore the etiological cause of high aflatoxin contamination of US corn.

View Article and Find Full Text PDF

Background: Significant amounts of nutrients, including dietary fibers, proteins, minerals, and vitamins are present in legumes, but the presence of anti-nutritional factors (ANFs) like phytic acid, tannins, and enzyme inhibitors impact the consumption of legumes and nutrient availability. In this research, the effect of a physical process (sonication or precooking) and fermentation with Lactobacillus plantarum and Pediococcus acidilactici on the ANFs of some legumes was evaluated.

Results: Total phenolic content was significantly (P < 0.

View Article and Find Full Text PDF

Changes in markers of lipid oxidation and thermal treatment in feed-grade fats and oils.

J Sci Food Agric

June 2020

USDA-ARS-National Laboratory for Agriculture and the Environment, USDA-ARS, Ames, IA, USA.

Background: Oxidized feed lipids have been shown to have detrimental effects on food animal growth and metabolism. The present study aimed to measure classes of lipid oxidation products (LOP) in feed-grade oils at temperatures representing production and storage conditions.

Results: There were significant oil type × time interactions in the accumulation of primary and secondary LOP.

View Article and Find Full Text PDF

The house cricket, Acheta domesticus L. (Orthoptera: Gryllidae) is one of the most important species of industrialized insects in the United States. Within the past five years the market of cricket powder as a food ingredient has been growing with increasing consumer interest on more sustainable sources of food.

View Article and Find Full Text PDF

Impact of high-power sonication (HPS) as pretreatment in extraction and some physicochemical properties of proteins from soybean flakes, flour of soybean, chickpea, and kidney bean was evaluated. Soybean flakes and flours from soybean, chickpea, and kidney bean were dispersed in distilled water (1.10 w/v) and sonicated at two power densities (PD) of 2.

View Article and Find Full Text PDF

d-Xylose sugar is a common component of hemicellulose, the second largest fraction of biomass. Many groups have developed biological conversions of d-xylose to value-added products by recombinant expression of the xylose dehydrogenase enzyme from Caulobacter crescentus. This enzyme uses NAD as a cofactor to oxidize d-xylose to d-xylono-1,4-lactone.

View Article and Find Full Text PDF
Article Synopsis
  • Two GH43 β-xylosidases, RS223-BX and BoXA, share 81% amino acid identity but have different metal dependency in their catalytic mechanisms.
  • Site-directed mutagenesis on key residues showed that while RS223-BX's activity relies heavily on metal binding (with significant loss of activity upon mutation), BoXA's activity is less affected and can even increase with certain mutations, indicating a different functional strategy.
  • These findings highlight the divergent roles of metal ions in catalysis between these closely related enzymes.
View Article and Find Full Text PDF

Natural products (NPs) are a rich source of medicines, but traditional discovery methods are often unsuccessful due to high rates of rediscovery. Genetic approaches for NP discovery are promising, but progress has been slow due to the difficulty of identifying unique biosynthetic gene clusters (BGCs) and poor gene expression. We previously developed the metabologenomics method, which combines genomic and metabolomic data to discover new NPs and their BGCs.

View Article and Find Full Text PDF

Transgenic soybean producing the Cry1Ac insecticidal protein from the bacterium Bacillus thuringiensis is used to control larvae of the velvetbean caterpillar (Anticarsia gemmatalis Hübner) and the soybean looper [Chrysodeixis includens (Walker)]. The main threat to the sustainability of this technology is the development of resistance, which could be delayed by using pyramiding of diverse Bt insecticidal genes. We report high activity of Cry2Ac7 and Vip3Aa11 but not Cry1Ie2 against larvae of A.

View Article and Find Full Text PDF

Soil seedbanks drive infestations of annual weeds, yet weed management focuses largely on seedling mortality. As weed seedbanks increasingly become reservoirs of herbicide resistance, species-specific seedbank management approaches will be essential to weed control. However, the development of seedbank management strategies can only develop from an understanding of how seed traits affect persistence.

View Article and Find Full Text PDF

We recently reported on the kinetics of the polygalacturonase TtGH28 acting on trimer and dimer substrates. When the starting substrate for hydrolysis is the trimer, the product dimer is also subject to hydrolysis, resulting in discrepancies when either the concentration of dimer or monomer product is used for analysis of trimer hydrolysis. Here, we derive a method for determining catalytic rates of exo-hydrolases acting on trimer (and higher order) substrates when products may also be substrates for hydrolysis and show how this correction may be applied for TtGH28.

View Article and Find Full Text PDF

A new crown and root rot disease of landscape plantings of the malvaceous ornamental common rose mallow (Hibiscus moscheutos) was first detected in Washington State in 2012. The main objectives of this study were to complete Koch's postulates, document the disease symptoms photographically, and identify the causal agent using multilocus molecular phylogenetics. Results of the pathogenicity experiments demonstrated that the Fusarium sp.

View Article and Find Full Text PDF

Divalent metal-activated glycoside hydrolase family 43 (GH43) β-xylosidases have been found to have high k /K for xylooligosaccharides and may demonstrate high efficacy in industrial reactors digesting hemicellulose. By searching an amino acid database, we found a Bacteroides ovatus GH43 β-xylosidase termed BoXA that is 81% identical in overall amino acid sequence to a GH43, divalent metal-activated β-xylosidase with high k /K , and also it has 19 of 20 residues in the active site conserved. However, unlike its metal-activated homolog, the B.

View Article and Find Full Text PDF

The gene encoding RUM630-BX, a β-xylosidase/arabinofuranosidase, was identified from activity-based screening of a cow rumen metagenomic library. The recombinant enzyme is activated as much as 14-fold (kcat) by divalent metals Mg(2+), Mn(2+) and Co(2+) but not by Ca(2+), Ni(2+), and Zn(2+). Activation of RUM630-BX by Mg(2+) (t0.

View Article and Find Full Text PDF

A Culture Method for Darkling Beetles, Blapstinus spp. (Coleoptera:Tenebrionidae).

J Econ Entomol

June 2015

USDA/ARS/National Center for Agricultural Utilization Research (NCAUR), 1815 N. University St., Peoria, IL 61604.

Darkling beetles, Blapstinus spp., have become a serious pest of Cucurbitaceae crops, especially in California. A culture method was sought to provide large numbers (>500) of adult beetles of known age and sex that could be used for laboratory testing when needed.

View Article and Find Full Text PDF

Kinetic experiments of GSXynB2, a GH52 retaining β-xylosidase, acting on 2-nitrophenyl-β-d-xylopyranoside (2NPX), 4-nitrophenyl-β-d-xylopyranoside (4NPX), 4-methylumbelliferyl-β-d-xylopyranoside (MuX) and xylobiose (X2) were conducted at pH 7.0 and 25 °C. Catalysis proceeds in two steps (xylodidation followed by dexylosidation): E + substrate TO E-xylose + leaving group TO E + xylose.

View Article and Find Full Text PDF

X-ray Crystal Structure of Divalent Metal-Activated β-xylosidase, RS223BX.

Appl Biochem Biotechnol

October 2015

Synchrotron Research Center, Northwestern University, 9700 S Cass Ave, Argonne, IL, 60439, USA.

We report the X-ray crystal structure of a glycoside hydrolase family 43 β-xylosidase, RS223BX, which is strongly activated by the addition of divalent metal cations. The 2.69 Å structure reveals that the Ca(2+) cation is located at the back of the active-site pocket.

View Article and Find Full Text PDF

We obtained Cx1 from a commercial supplier, whose catalog listed it as a β-xylosidase of glycoside hydrolase family 43. NMR experiments indicate retention of anomeric configuration in its reaction stereochemistry, opposing the assignment of GH43, which follows an inverting mechanism. Partial protein sequencing indicates Cx1 is similar to but not identical to β-xylosidases of GH52, including Q09LZ0, that have retaining mechanisms.

View Article and Find Full Text PDF

RS223-BX of glycoside hydrolase family 43 is a β-d-xylosidase that is strongly activated (k(cat)/K(m) as much as 116-fold) by the addition of divalent metal cations, Ca(2+), Co(2+), Fe(2+), Mg(2+), Mn(2+) and Ni(2+). Slow activation by Mg(2+) was demonstrated (k(on) 0.013 s(-1) mM(-1), k(off) 0.

View Article and Find Full Text PDF

The hemicellulose xylan constitutes a major portion of plant biomass, a renewable feedstock available for conversion to biofuels and other bioproducts. β-xylosidase operates in the deconstruction of the polysaccharide to fermentable sugars. Glycoside hydrolase family 43 is recognized as a source of highly active β-xylosidases, some of which could have practical applications.

View Article and Find Full Text PDF

Analysis of 2,4,6-nonatrienal geometrical isomers from male flea beetles, Epitrix hirtipennis and E. fuscula.

J Agric Food Chem

July 2008

USDA-ARS National Center for Agricultural Utilization Research, 1815 North University Street, Peoria, Illinois 61604, USA.

Geometrical isomers of 2,4,6-nonatrienal have been reported from a variety of food- and insect-related sources. It was discovered recently that the eggplant flea beetle, Epitrix fuscula, uses the (2 E,4 E,6 Z) and (2 E,4 E,6 E) isomers as components of its male-produced aggregation pheromone. Here, we learned that the related species, E.

View Article and Find Full Text PDF

An effective synthetic attractant, based on host-related volatile compounds, was developed for the nitidulid beetle, Carpophilus davidsoni, as part of a program for managing this pest in Australian peach orchards. Fermenting peach juice and whole peaches and nectarines served as chemical models for the attractant, and synthetic formulations were sought that matched the natural sources, both with respect to emission rates of key chemicals (in ng/min) and attractiveness to flying beetles. All volatile sources were kept in airstreams during laboratory chemical measurements, and these airstreams were subsequently directed to the wind-tunnel behavioral assay, allowing the determined emission rates of compounds to be associated with particular levels of attractiveness.

View Article and Find Full Text PDF

We screened a Fusarium sporotrichioides NRRL 3299 cDNA expression library in a toxin-sensitive Saccharomyces cerevisiae strain lacking a functional PDR5 gene. Fourteen yeast transformants were identified as resistant to the trichothecene 4,15-diacetoxyscirpenol, and each carried a cDNA encoding the trichothecene 3-O-acetyltransferase that is the F. sporotrichioides homolog of the Fusarium graminearum TRI101 gene.

View Article and Find Full Text PDF