224 results match your criteria: "U.S. Pacific Basin Agricultural Research Center[Affiliation]"

Methyl eugenol (ME) is a powerful semiochemical attractant to males of the oriental fruit fly, Bactrocera dorsalis (Hendel) (Diptera: Tephritidae), and is the keystone of detection, control, and eradication programs against this polyphagous and highly invasive tephritid pest. Despite its status as a model lure against B. dorsalis, variation among individuals in their attraction is known, independent of the generally increasing attraction with age and decreases with previous exposure.

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Foraging behavior of wild female melon fly, Bactrocera (Zeugodacus) cucurbitae Coquillett, a worldwide pest of economically important cucurbit crops, was examined through mark and recapture studies in both wild (Kona: dominated by the invasive weed ivy gourd, Coccinea grandis [L.] Voigt [Cucurbitaceae]), and cultivated (Kapoho: dominated by papaya, Carica papaya L. [Caricaceae] orchards) habitats on Hawaii Island.

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The western flower thrips, Frankliniella occidentalis (Pergande) (Thysanoptera: Thripidae), is an important pest of fresh horticultural produce and as such is considered a biosecurity risk in many countries from which it is absent. Information is needed on the radiation tolerance of important surface pests of quarantine importance such as F. occidentalis so that phytosanitary irradiation treatments for exported fresh commodities can be lowered to below the 400 Gy generic treatment currently approved for most insects in the United States and Australia.

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Article Synopsis
  • The text discusses the importance of data submission and curation for whole genome sequencing projects, particularly to the NCBI, which is often overlooked due to the complexity and resource requirements of existing tools.
  • It introduces the Genome Annotation Generator, a user-friendly software solution designed to help researchers easily create .tbl files for NCBI submission without needing extensive programming knowledge or specialized setups.
  • The tool aims to bridge the gap for individual researchers or smaller labs by simplifying the submission process for annotated genome assemblies, making it accessible to a wider audience.
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High-throughput sequencing has fundamentally changed how molecular phylogenetic data sets are assembled, and phylogenomic data sets commonly contain 50- to 100-fold more loci than those generated using traditional Sanger sequencing-based approaches. Here, we demonstrate a new approach for building phylogenomic data sets using single-tube, highly multiplexed amplicon sequencing, which we name HiMAP (highly multiplexed amplicon-based phylogenomics) and present bioinformatic pipelines for locus selection based on genomic and transcriptomic data resources and postsequencing consensus calling and alignment. This method is inexpensive and amenable to sequencing a large number (hundreds) of taxa simultaneously and requires minimal hands-on time at the bench (<1/2 day), and data analysis can be accomplished without the need for read mapping or assembly.

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To date, all known or suspected pheromones of click beetles (Coleoptera: Elateridae) have been identified solely from species native to Europe and Asia; reports of identifications from North American species dating from the 1970s have since proven to be incorrect. While conducting bioassays of pheromones of a longhorned beetle (Coleoptera: Cerambycidae), we serendipitously discovered that males of Cardiophorus tenebrosus L. and Cardiophorus edwardsi Horn were specifically attracted to the cerambycid pheromone fuscumol acetate, (E)-6,10-dimethylundeca-5,9-dien-2-yl acetate, suggesting that this compound might also be a sex pheromone for the two Cardiophorus species.

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Macadamia felted coccid, Eriococcus ironsidei (Williams) (Hemiptera: Eriococcidae) was first found infesting macadamia trees in the island of Hawaii in 2005. Macadamia felted coccid infests all above-ground parts of trees to feed and reproduce. Their feeding activity distorts and stunts new growth which causes yellow spotting on older leaves, and when population densities become high, branch dieback occurs.

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Irradiation is used to disinfest the oriental fruit fly, Bactrocera dorsalis (Hendel) (Diptera: Tephritidae) and other pests on mango fruits before export from Thailand to foreign markets. Modified atmosphere packaging (MAP) used during export of mangoes creates a low-oxygen environment that may reduce the efficacy of quarantine irradiation treatment against B. dorsalis.

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Irradiation is a postharvest treatment option for exported berries and berry-like fruits to prevent movement of the quarantine pest European grape vine moth, Lobesia botrana (Denis & Schiffermüller) (Lepidoptera: Tortricidae). The effects of irradiation on egg, larval, and pupal development in L. botrana were examined.

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Modified atmosphere packaging (MAP) creates a low-oxygen (O2) environment that can increase the shelf life of fresh produce by decreasing respiration and the growth of pathogens. Low oxygen may also increase insect tolerance to irradiation (IR), and the use of MAP with products treated by IR to control quarantine pests before export may inadvertently compromise treatment efficacy. Spotted wing drosophila, Drosophila suzukii Matsumura (Diptera: Drosophilidae) is a quarantine pest of stone and small fruits and a potential target for postharvest IR treatment.

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Incongruence between molecules and morphology: A seven-gene phylogeny of Dacini fruit flies paves the way for reclassification (Diptera: Tephritidae).

Mol Phylogenet Evol

April 2018

University of Hawai'i at Mānoa, Department of Plant and Environmental Protection Sciences, 3050 Maile Way, Gilmore 310, Honolulu, HI 96822, United States. Electronic address:

Article Synopsis
  • Molecular and morphological studies on the Dacini tribe of tephritid flies reveal conflicting results, with traditional taxonomy based on limited morphological traits lacking cladistic methods.
  • Dacini includes many economically significant pest species known for their black and yellow markings that mimic wasps, complicating species differentiation due to plasticity in characteristics.
  • Recent research involving the sequencing of seven genes from 167 Dacini species supports the monophyly of larger genera like Dacus, Bactrocera, and Zeugodacus, but indicates that lower taxonomic groups are generally not monophyletic, requiring further revision for clarity in their taxonomy and evolution.
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To assess the potential to suppress Mediterranean fruit fly, Ceratitis capitata (Wiedemann; Diptera: Tephritidae), via mass trapping with Trimedlure (TML), we compared fly catch (as catch per trap per time period) provided by either a novel, solid, triple-lure dispenser with TML, methyl eugenol (ME), and raspberry ketone (RK) (TMR) or solid TML plugs, both without insecticides, in addition to Biolure bait stations. Work was done in a coffee plantation that had a dense C. capitata population.

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Characterizing genetic structure across geographic space is a fundamental challenge in population genetics. Multivariate statistical analyses are powerful tools for summarizing genetic variability, but geographic information and accompanying metadata are not always easily integrated into these methods in a user-friendly fashion. Here, we present a deployable Python-based web-tool, mvmapper, for visualizing and exploring results of multivariate analyses in geographic space.

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Article Synopsis
  • Scleractinian corals are crucial to coral reef ecosystems and face decline due to various stressors, making the study of coral health and diseases like growth anomaly (GA) essential for preservation efforts.
  • In this research, RNA sequencing was used to analyze gene expression in three types of coral tissue: healthy, GA-affected, and GA-unaffected, revealing significant differences in genetic profiles among them.
  • The study found 105 coral genes that were differentially expressed, indicating GA affects not only visibly diseased tissue but also seemingly healthy parts, suggesting changes in developmental and immune response processes in corals.
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  • Mango is a widely cultivated fruit crop, but there are less-known relatives with potential for fruit production in areas unsuitable for traditional mango cultivation.
  • Many of these relatives have restricted distributions, leading to limited research on how susceptible their fruits are to pests like tephritid fruit flies, which affects both quality and export security.
  • This study investigates the natural infestation rates of the oriental fruit fly in two mango relatives from Indonesia, filling a gap in previously unavailable data on their susceptibility.
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The Mediterranean fruit fly (Wiedemann) is a destructive agricultural pest and the subject of exclusion efforts in many countries. Suppression and eradication of invasive populations to prevent its establishment is facilitated by the release of sterile males using the sterile insect technique (SIT). In SIT release areas, it is critical to accurately discriminate between released sterile males and wild individuals to detect extremely rare invasive individuals in areas inundated with millions of sterile male flies.

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Article Synopsis
  • Researchers analyzed degradation models for fruit fly trap dispensers, specifically solid male lure formulations containing various attractants and an insecticide, DDVP, in different weather conditions.
  • The study found that the degradation rates of the lures varied, with trimedlure degrading the fastest, and summer conditions leading to quicker degradation compared to winter.
  • The results suggest that the use of these TMR dispensers might lower costs in fruit fly detection programs, as they could replace multiple individual traps without needing additional regulatory approval for insecticidal strips.
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Changes in gene regulation that underlie phenotypic evolution can be encoded directly in the DNA sequence or mediated by chromatin modifications such as DNA methylation. It has been hypothesized that the evolution of eusocial division of labor is associated with enhanced gene regulatory potential, which may include expansions in DNA methylation in the genomes of Hymenoptera (bees, ants, wasps, and sawflies). Recently, this hypothesis garnered support from analyses of a commonly used metric to estimate DNA methylation in silico, CpG content.

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Tephritid fruit flies are economically important orchard pests globally. While much effort has focused on controlling individual species with a combination of pesticides and biological control, less attention has been paid to managing assemblages of species. Although several tephritid species may co-occur in orchards/cultivated areas, especially in mixed-cropping schemes, their responses to pesticides may be highly variable.

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Anthurium amnicola Dressler possesses a number of desirable and novel ornamental traits such as a purple-colored upright spathe, profuse flowering, and floral scent, some of which have been introgressed into modern Anthurium cultivars. As a first step in identifying genes associated with these traits, the transcriptome from root, leaf, spathe, and spadix from an accession of A. amnicola was assembled, resulting in 28,019 putative transcripts representing 19,458 unigenes.

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CRISPRi-mediated metabolic engineering of E. coli for O-methylated anthocyanin production.

Microb Cell Fact

January 2017

Department of Chemical and Biological Engineering, Center for Biotechnology and Interdisciplinary Studies, Rensselaer Polytechnic Institute, Biotech 4005D, 110 8th Street, Troy, NY, 12180, USA.

Background: Anthocyanins are a class of brightly colored, glycosylated flavonoid pigments that imbue their flower and fruit host tissues with hues of predominantly red, orange, purple, and blue. Although all anthocyanins exhibit pH-responsive photochemical changes, distinct structural decorations on the core anthocyanin skeleton also cause dramatic color shifts, in addition to improved stabilities and unique pharmacological properties. In this work, we report for the first time the extension of the reconstituted plant anthocyanin pathway from (+)-catechin to O-methylated anthocyanins in a microbial production system, an effort which requires simultaneous co-option of the endogenous metabolites UDP-glucose and S-adenosyl-L-methionine (SAM or AdoMet).

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Bactrocera dorsalis (Hendel) (Diptera: Tephritidae) is arguably the most important tephritid attacking fruits after Ceratitis capitata (Wiedemann) (Diptera: Tephritidae). In 2003 it was found in Africa and quickly spread to most of the sub-Saharan part of the continent, destroying fruits and creating regulatory barriers to their export. The insect is causing new nutritional and economic losses across Africa, as well as the losses it has caused for decades in infested areas of Asia, New Guinea, and Hawaii.

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The melon fly, Zeugodacus cucurbitae (Coquillett), is a serious pest of tropical horticulture, causing damage to cucurbits, tree fruits, and fruiting vegetables. Melon flies are especially attractive to freshly sliced cucumber, and this has led to the identification of a nine-compound kairomone lure that can be used to trap both female and male flies. In this study, a seven-compound lure, containing (Z)-6-nonenal, (Z)-6-nonen-1-ol, 1-octen-3-ol, (E,Z)-2,6-nonadienal, (E)-2-nonenal, hexanal, and 1-hexanol, was formulated into PVC plugs (100 or 300 mg/plug) for field testing in wet traps.

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We studied radiation tolerance in queens of the red imported fire ant Solenopsis invicta Buren (Hymenoptera: Formicidae) to identify a dose that prevents reproduction. Virgin or fertile queens were collected from Santa Fe and Formosa provinces in Argentina and reared in the laboratory in microcolonies. Virgin queens were irradiated at 0 (control), 70, 90, 120, or 150 Gy, and fertile queens were irradiated at 0, 60, 125, and 190 Gy, and then followed for 11 wk in the microcolonies to evaluate survival and reproduction.

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