4 results match your criteria: "Turkey oadebali@sabanciuniv.edu.[Affiliation]"

Ultraviolet (UV) component of solar radiation impairs genome stability by inducing the formation of pyrimidine-pyrimidone (6-4) photoproducts [(6-4)PPs] in plant genomes. (6-4)PPs disrupt growth and development by interfering with transcription and DNA replication. To resist UV stress, plants employ both photoreactivation and nucleotide excision repair that excises oligonucleotide containing (6-4)PPs through two subpathways: global and transcription-coupled excision repair (TCR).

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Downregulated NPAS4 in multiple brain regions is associated with major depressive disorder.

Sci Rep

December 2023

Molecular Biology, Genetics and Bioengineering Program, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Istanbul, Turkey.

Major Depressive Disorder (MDD) is a commonly observed psychiatric disorder that affects more than 2% of the world population with a rising trend. However, disease-associated pathways and biomarkers are yet to be fully comprehended. In this study, we analyzed previously generated RNA-seq data across seven different brain regions from three distinct studies to identify differentially and co-expressed genes for patients with MDD.

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Evolutionary association of receptor-wide amino acids with G protein-coupling selectivity in aminergic GPCRs.

Life Sci Alliance

October 2022

Molecular Biology, Genetics and Bioengineering Program, Faculty of Engineering and Natural Sciences, Sabanci University, Istanbul, Turkey

G protein-coupled receptors (GPCRs) induce signal transduction pathways through coupling to four main subtypes of G proteins (G, G, G, and G), selectively. However, G protein selective activation mechanisms and residual determinants in GPCRs have remained obscure. Herein, we performed extensive phylogenetic analysis and identified specifically conserved residues for the aminergic receptors having similar coupling profiles.

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Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events.

BMC Genomics

August 2021

Molecular Biology, Genetics & Bioengineering Program, Faculty of Engineering and Natural Sciences, Sabanci University, 34956, Istanbul, Turkey.

Article Synopsis
  • Nucleotide excision repair is essential for removing bulky DNA damage, such as UV-induced lesions, and the study used eXcision Repair sequencing (XR-seq) to profile this repair process in the gray mouse lemur compared to humans.
  • Researchers found differences in UV sensitivity and repair efficiency between mouse lemurs and humans, but the repair patterns in homologous DNA regions were highly correlated, particularly for actively expressed genes.
  • The study concludes that mouse lemurs and humans share a similar DNA repair mechanism despite variations in efficiency, highlighting evolutionary similarities across primates.
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