390 results match your criteria: "Tuebitak Marmara Research Center[Affiliation]"

Nowadays, cancer represents one of the major causes of death in humans worldwide, which renders the quest for new and improved antineoplastic agents to become an urgent issue in the field of biomedicine and human health. The present research focuses on the synthesis of 2,3,2',3'-tetra(pyridin-2-yl)-6,6'-biquinoxaline) and (2,3,2',3'-tetra(thiophen-2-yl)-6,6'-biquinoxaline) containing copper(II) and platinum(II) compounds as prodrug candidates. The binding interaction of these compounds with calf thymus DNA (CT-DNA) and human serum albumin were assessed with UV titration, thermal decomposition, viscometric, and fluorometric methods.

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The synthesis and characterization of a novel covalent organic polymer cobalt (II) phthalocyanine () including tetra amino group is described for the first time. This covalent organic polymer (COP) is characterized by FTIR, TGA, RAMAN, PXRD, and SEM-EDS. The developed sensor is tested for acetone, ethyl butyrate, hexane, chloroform, and butyraldehyde in a range of 80-10,900 ppm.

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GIMAP5 deficiency reveals a mammalian ceramide-driven longevity assurance pathway.

Nat Immunol

February 2024

Molecular Development of the Immune System Section, Laboratory of Immune System Biology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.

Article Synopsis
  • Researchers aim to extend human healthspans by keeping cells functional and non-senescent, as aging appears to be genetically regulated in model organisms.
  • A new human genetic disease linked to GIMAP5 deficiency leads to cell senescence, liver and immune dysfunction, and early death, highlighting GIMAP5's importance in longevity.
  • GIMAP5 helps regulate the accumulation of harmful long-chain ceramides by interacting with a protein kinase (CK2), and targeting CK2 can restore function in GIMAP5-deficient cells, showing its role in maintaining immune health and longevity.
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Developing new electrode materials with good temperature-dependent electrochemical performance has become a great issue for the deployment of hybrid supercapacitors with wide temperature tolerance. In this work, a series of Ta-substituted SrCo Ta O (x=0.05, 0.

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This study investigates the impact of transportation vehicles on air pollution emissions in Istanbul, a metropolitan city in Türkiye. The TIMES (The Integrated MARKAL-EFOM System) Model has been used to determine the current level of air pollutants coming from the transportation sector, make future estimates, and assess the impact of various scenarios on air pollution emissions. Air pollutants such as carbon monoxide, nitrogen oxides, sulfur oxides, particulate matter, and non-methane volatile organic compounds are included in the model.

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Development of Molecular-Based Screening Test for Hepatitis B Virus in Human Plasma Samples.

Jpn J Infect Dis

March 2024

Biomaterials, Biomechanics and Bioelectronics Center of Excellence, TÜBİTAK Marmara Research Center, Türkiye.

Despite regular administration of hepatitis B virus (HBV) vaccine in several countries, the mortality rate associated with HBV remains significant. The antiviral medications available for the treatment of HBV infection do not suffice for the serious complications related to chronic HBV infection. Additionally, the serological tests fail to detect early viral replication preventing early treatment response.

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Rapid method for detection of Vibrio cholerae from drinking water with nanomaterials enhancing electrochemical biosensor.

J Microbiol Methods

January 2024

TUBITAK Marmara Research Center, Life Sciences Vice Presidency, CBRN Defense Technologies Research Group, Kocaeli, Turkey. Electronic address:

Cholera is a potentially fatal diarrheal disease caused by Vibrio cholerae and is spread to humans from contaminated food and water. In order to prevent spread of epidemic chlorea, the development of novel sensitive, selective, user-friendly, cost-effective and rapid detection systems to detect of V. cholerae are necessary.

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The defective structure and high oxygen vacancy concentration of SrFeO perovskite enable fast ion-electron transport, but its low conductivity still hinders the high electrochemical performance. Herein, to enhance the conductivity of SrFeO-based electrodes, polypyrrole-modified SrFeO perovskite on carbon cloth (PPy@SFO@CC) has been successfully fabricated by electrodeposition of polypyrrole (PPy) on the surface of SFO@CC. The optimal PPy700@SFO@CC electrode exhibits a specific capacitance of 421 F g at 1 A g.

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Corrigendum to "Expanding the clinical and immunological phenotypes of PAX1-deficient SCID and CID patients" [Clinical Immunology 255 (2023) 109757].

Clin Immunol

November 2023

Division of Pediatric Allergy and Immunology, School of Medicine, Marmara University, Istanbul, Turkey; Istanbul Jeffrey Modell Diagnostic and Research Center for Primary Immunodeficiencies, Istanbul, Turkey; The Isil Berat Barlan Center for Translational Medicine, Istanbul, Turkey. Electronic address:

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This study focuses on creating a specialized nanogel for targeted drug delivery in cancer treatment, specifically targeting prostate cancer. This nanogel (referred to as SGK 636/Peptide 563/PEtOx nanogel) is created using hydrophilic poly(2-ethyl-2-oxazoline) (PEtOx) through a combination of living/cationic ring-opening polymerization (CROP) and alkyne-azide cycloaddition (CuAAC) "click" chemical reactions. A fluorescent probe (BODIPY) is also conjugated with the nanogel to monitor drug delivery.

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Article Synopsis
  • Cytokine storm significantly contributes to deaths in COVID-19 patients, prompting research into therapies like recombinant interferon lambda 1 (IFN-λ1) to prevent severe cases.
  • A recent study analyzed serum samples from 208 hospitalized COVID-19 patients, revealing that low levels of IFN-λ1 and high levels of IL-6 are linked to clinical severity, while increasing anti-S1 IgG antibodies indicate potential recovery.
  • Monitoring levels of IFN-λ1, IL-6, and antibodies in severe cases, especially in intensive care, can improve treatment management and help identify patients ready for discharge.
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Expanding the clinical and immunological phenotypes of PAX1-deficient SCID and CID patients.

Clin Immunol

October 2023

Division of Pediatric Allergy and Immunology, School of Medicine, Marmara University, Istanbul, Turkey; Istanbul Jeffrey Modell Diagnostic and Research Center for Primary Immunodeficiencies, Istanbul, Turkey; The Isil Berat Barlan Center for Translational Medicine, Istanbul, Turkey. Electronic address:

Paired box 1 (PAX1) deficiency has been reported in a small number of patients diagnosed with otofaciocervical syndrome type 2 (OFCS2). We described six new patients who demonstrated variable clinical penetrance. Reduced transcriptional activity of pathogenic variants confirmed partial or complete PAX1 deficiency.

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Despite the huge and efficient functionalities of reduced graphene oxide (RGO) for bioengineering applications, the use of harsh chemicals and unfavorable techniques in their production remains a major challenge. Microbial production of reduced graphene oxide (RGO) using specific bacterial strains has gained interest as a sustainable and efficient method. The reduction of GO to RGO by selected bacterial strains was achieved through their enzymatic activities and resulted in the removal of oxygen functional groups from GO, leading to the formation of RGO with enhanced structural integrity.

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This research deals with the land-based pressures on the southern Black Sea coast (Turkey), with the objective of assessing their eutrophication impacts. In this context, reference values of some of the eutrophication indicators were calculated, and eutrophication assessment was carried out for this area using the holistic approach NEAT (Nested Environmental Status Assessment Tool). In addition, correlations between NEAT results of coastal regions and pressure-impact analysis methods were investigated.

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A quantum-classical protocol that incorporates Jahn-Teller vibronic coupling effects and cluster analysis of molecular dynamics simulations is reported, providing a tool for simulations of absorption spectra and ultrafast nonadiabatic dynamics in large molecular photosystems undergoing aggregation in solution. Employing zinc phthalocyanine dyes as target systems, we demonstrated that the proposed protocol provided fundamental information on vibronic, electronic couplings and thermal dynamical effects that mostly contribute to the absorption spectra lineshape and the fluorescence quenching processes upon dye aggregation. Decomposing the various effects arising upon dimer formation, the structure-property relations associated with their optical responses have been deciphered at atomistic resolution.

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Mesenchymal stem cells differentiate to retinal ganglion-like cells in rat glaucoma model induced by polystyrene microspheres.

Tissue Cell

October 2023

Department of Pediatric Allergy and Immunology, Marmara University Faculty of Medicine, Istanbul, Turkey; Department of Immunology, Marmara University Faculty of Medicine, Istanbul, Turkey; Marstem Cell Technologies, Marmara University Technopark, İstanbul, Turkey.

Aim: The study aimed to evaluate the differentiation ability of intravitreally injected rat bone marrow-derived mesenchymal stem cells (rBM-MSCs) to retinal ganglion-like cells in a polystyrene microsphere induced rat glaucoma model.

Materials And Methods: The glaucoma rat model was generated via intracameral injection of 7 microliter polystyrene microspheres. Green fluorescence protein-labeled (GFP) rBM-MSCs were transplanted intravitreally at or after induction of ocular hypertension (OHT), depending on the groups.

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Therapeutic modalities and clinical outcomes in a large cohort with LRBA deficiency and CTLA4 insufficiency.

J Allergy Clin Immunol

December 2023

Division of Pediatric Allergy and Immunology, School of Medicine, Marmara University, Istanbul, Turkey; Istanbul Jeffrey Modell Diagnostic and Research Center for Primary Immunodeficiencies, Istanbul, Turkey; The Isil Berat Barlan Center for Translational Medicine, Istanbul, Turkey. Electronic address:

Background: LPS-responsive beige-like anchor (LRBA) deficiency (LRBA) and cytotoxic T-lymphocyte-associated antigen-4 (CTLA4) insufficiency (CTLA4) are mechanistically overlapped diseases presenting with recurrent infections and autoimmunity. The effectiveness of different treatment regimens remains unknown.

Objective: Our aim was to determine the comparative efficacy and long-term outcome of therapy with immunosuppressants, CTLA4-immunoglobulin (abatacept), and hematopoietic stem cell transplantation (HSCT) in a single-country multicenter cohort of 98 patients with a 5-year median follow-up.

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Therapeutic Effect of C-Vx Substance in K18-hACE2 Transgenic Mice Infected with SARS-CoV-2.

Int J Mol Sci

July 2023

Department of Immunology, Aziz Sancar Institute of Experimental Medicine, Istanbul University, Istanbul 34452, Türkiye.

C-Vx is a bioprotective product designed to boost the immune system. This study aimed to determine the antiviral activity of the C-Vx substance against SARS-CoV-2 infection. The effect of C-Vx in K18-hACE2 transgenic mice against the SARS-CoV-2 virus was investigated.

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Cryogenic X-ray crystallographic studies of biomacromolecules at Turkish Light Source "".

Turk J Biol

January 2023

Department of Molecular Biology and Genetics, Faculty of Science, Koç University, İstanbul, Türkiye.

X-ray crystallography is a robust and powerful structural biology technique that provides high-resolution atomic structures of biomacromolecules. Scientists use this technique to unravel mechanistic and structural details of biological macromolecules (e.g.

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The revolutionary CRISPR/Cas9 genome-editing technology has emerged as a powerful tool for plant improvement, offering unprecedented precision and efficiency in making targeted gene modifications. This powerful and practical approach to genome editing offers tremendous opportunities for crop improvement, surpassing the capabilities of conventional breeding techniques. This article provides an overview of recent advancements and challenges associated with the application of CRISPR/Cas9 in plant improvement.

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Atypical Localization of Eczema Discriminates DOCK8 or STAT3 Deficiencies from Atopic Dermatitis.

J Clin Immunol

November 2023

Division of Pediatric Allergy/Immunology, Faculty of Medicine, Pediatric Allergy and Immunology, Marmara University, Fevzi Çakmak Mah. No: 41, Pendik, Istanbul, Turkey.

Article Synopsis
  • The study focuses on distinguishing between autosomal recessive DOCK8 and autosomal dominant STAT3 deficiencies, which present symptoms similar to atopic dermatitis (AD), highlighting the need for early diagnosis.
  • It assessed 100 patients, collecting data on skin manifestations, infections, and allergies, using principal component analysis to differentiate between the disorders and AD.
  • Findings reveal specific atypical eczema and immune cell profiles in DOCK8 and STAT3 patients that effectively separate these conditions from AD, aiding clinicians in making timely diagnoses.
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Effective synthesis of prolinamides of 2-(2-aminocyclohexyl)phenols has been accomplished. The novel prolinamides are demonstrated to catalyze the direct aldol reaction between ketones and aldehydes with high stereoselectivity, thus affording up to 99 : 1 / diastereomeric and 99 : 1 enantiomeric ratio. Experimental results as well as computational investigations have revealed that the electrophile ( aldehyde) is activated by dual hydrogen bonding with the amide NH and phenolic OH group of the catalyst.

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This study investigated the microstructures, mechanical performances, corrosion resistances, and in vitro studies of porous Ti-xNb-10Zr (x: 10 and 20; at. %) alloys. The alloys were fabricated by powder metallurgy with two categories of porosities, i.

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Biocontrol Potential of Antagonistic Yeasts on In Vitro and In Vivo Growth and Its AFB Production.

Toxins (Basel)

June 2023

Department of Food Engineering, Faculty of Chemical and Metallurgical Engineering, Istanbul Technical University, 34469 Istanbul, Türkiye.

is a major aflatoxin B, posing significant health concerns to humans, crops, and producer fungi. Due to the undesirable consequences of the usage of synthetic fungicides, biological control using yeasts has gained more attention. In this study, eight isolates of epiphytic yeasts belonging to sp.

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Background: Inflammatory Bowel Disease (IBD) is a group of chronic idiopathic inflammatory diseases of the gastrointestinal (GI) tract associated with the dysbiosis of gut microbiota. Metabarcoding-based profiling of the gut microbiota of IBD patients is generally based on the stool samples collected from individual patients which rarely represent the mucosa-associated microbiota. The ideal sampling strategy for routine monitoring of the mucosal component of IBD has yet to be determined.

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