370 results match your criteria: "Tsukuba Research Center[Affiliation]"

Helicobacter pylori extracts cholesterol from the host and converts it to its glycosides. We found that cholesteryl 6'-O-acyl α-glucoside (ChAcαG) produced by H. pylori is recognised by both invariant Vα14 NKT (iNKT) cells and a C-type lectin receptor Mincle (Clec4e).

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We spectroscopically investigated coordination state of Fe in methanol (MeOH) and ethanol (EtOH) solutions against Cl concentration ([Cl]). In both the system, we observed characteristic absorption bands due to the FeCl complex at high-[Cl] region. In the MeOH system, the proportion () of [FeCl] exhibits a stationary value of 0.

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Melamine is a precursor and building block for graphitic carbon nitride (g-CN) materials, a group of layered materials showing great promise for catalytic applications. The synthetic pathway to g-CN includes a polycondensation reaction of melamine by evaporation of ammonia. Melamine molecules in the crystal organize into wave-like planes with an interlayer distance of 3.

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Transient structural changes of Al_{2}O_{3} on subatomic length scales following irradiation with an intense x-ray laser pulse (photon energy: 8.70 keV; pulse duration: 6 fs; fluence: 8×10^{2}  J/cm^{2}) have been investigated by using an x-ray pump x-ray probe technique. The measurement reveals that aluminum and oxygen atoms remain in their original positions by ∼20  fs after the intensity maximum of the pump pulse, followed by directional atomic displacements at the fixed unit cell parameters.

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Multicomponent Crystals with Competing Intermolecular Interactions: In Situ X-ray Diffraction and Luminescent Features Reveal Multimolecular Assembly under Mechanochemical Conditions.

Angew Chem Int Ed Engl

August 2022

Department of Chemistry and Biochemistry, Graduate School of Engineering, Center for Molecular Systems (CMS), Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan.

Supramolecular chemistry under mechanochemical conditions has drawn attention because it can induce low-solubility molecules to self-assemble, although most of the reported examples have been limited to two-component systems. We applied mechanochemical synthesis to achieve multimolecular self-assembly in more challenging three-component systems. The produced crystals showed multicolor solid-state luminescence depending on the components when exposed to UV light.

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We propose a quantum-enhanced heat engine with entanglement. The key feature of our scheme is superabsorption, which facilitates enhanced energy absorption by entangled qubits. Whereas a conventional engine with N separable qubits provides power with a scaling of P=Θ(N), our engine uses superabsorption to provide power with a quantum scaling of P=Θ(N^{2}).

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The dynamic behavior of alkali metal ions, Li, Na, K, Rb and Cs in aqueous solutions is one of the most important topics in solution chemistry. Since these alkali metals contain nuclear magnetic resonance (NMR) active nuclei, it is possible to directly measure the diffusion constants of the alkali metal ions using the pulsed field gradient (PFG) NMR method. In this paper, the Li, Na, Rb, Cs and H resonances are observed for diffusion constants in aqueous solution and the solvent HO.

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Static structure factors and charge density for metallic aluminum were investigated by periodic calculations using atom-centered Gaussian-type basis sets with the Perdew-Burke-Ernzerhof (PBE) functional implemented in the CRYSTAL14 package and X-ray constrained wave function (XCW) fitting. The effects of additional diffuse d and f basis functions on structure factors were compared with synchrotron powder X-ray diffraction and quantitative convergent electron beam diffraction data. Changes in structure factors from an independent atom model at 022, 113, and 222 reflections introduced d and f basis functions similar to those of the experimental data.

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X-ray Electron Density Study of the Chemical Bonding Origin of Glass Formation in Metal-Organic Frameworks.

Angew Chem Int Ed Engl

May 2022

Center for Materials Crystallography, Department of Chemistry and Interdisciplinary Nanoscience Center (iNANO), Aarhus University, Langelandsgade 140, 8000, Aarhus, Denmark.

Glass-forming metal-organic frameworks (MOFs) have novel applications, but the origin of their peculiar melting behavior is unclear. Here, we report synchrotron X-ray diffraction electron densities of two zeolitic imidazolate frameworks (ZIFs), the glass-forming Zn-ZIF-zni and the isostructural thermally decomposing Co-ZIF-zni. Electron density analysis shows that the Zn-N bonds are more ionic than the Co-N bonds, which have distinct covalent features.

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Carbon nanotubes (CNTs) exhibit extremely high nanoscopic thermal/electrical transport and mechanical properties. However, the macroscopic properties of assembled CNTs are significantly lower than those of CNTs because of the boundary structure between the CNTs. Therefore, it is crucial to understand the relationship between the nanoscopic boundary structure in CNTs and the macroscopic properties of the assembled CNTs.

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Enantioselective reaction of -cyano imines: decarboxylative Mannich-type reaction with malonic acid half thioesters.

Chem Commun (Camb)

February 2022

Department of Life Science and Applied Chemistry, Graduate School of Engineering, Nagoya Institute of Technology, Gokiso, Showa-ku, Nagoya 466-8555, Japan.

The enantioselective reaction of imines bearing a cyano group as an activating group with malonic acid half thioesters gave chiral cyanamide derivatives with high enantioselectivity. The density functional theory (DFT) calculation clarified the stereochemical outcome and importance of the -cyano group for imines.

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Facile Multiple Alkylations of C Fullerene.

Molecules

January 2022

Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.

The reduction of fullerene (C) with sodium dispersion in the presence of an excess amount of dipropyl sulfate was found to yield highly propylated fullerene, C(CH) (max. = 24), and C(CH) was predominantly generated as determined by mass spectroscopy.

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The high electrical conductivity, chemical stability, and low toxicity of elemental Au make it a highly valuable resource. However, wastewater produced during the mining, utilization, and disposal of Au inevitably contains small amounts (10-40 mg L) of Au, thus posing environmental risks. It is too acidic to be treated with inexpensive and eco-friendly bioadsorbents previously studied for the remediation of less acidic effluents.

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Structural disorder, highly effective in reducing thermal conductivity, is important in technological applications such as thermal barrier coatings and thermoelectrics. In particular, interstitial, disordered, diffusive atoms are common in complex crystal structures with ultralow thermal conductivity, but are rarely found in simple crystalline solids. Combining single-crystal synchrotron X-ray diffraction, the maximum entropy method, diffuse scattering, and theoretical calculations, here we report the direct observation of one-dimensional disordered In chains in a simple chain-like thermoelectric InTe, which contains a significant In vacancy along with interstitial indium sites.

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Electron transfer phase transition and oxidization process in NaCoMn[Fe(CN)] (0.00 ≤ ≤ 1.60).

Chem Commun (Camb)

December 2021

Graduate School of Pure & Applied Science, University of Tsukuba, Tennodai 1-1-1, Tsukuba, Ibaraki 305-7571, Japan.

We investigated the phase diagram of NaCoMn[Fe(CN)] in the entire Na concentration range of 0.00 ≤ ≤ 1.60.

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Fabrication of Hydrogen Boride Thin Film by Ion Exchange in MgB.

Molecules

October 2021

Department of Materials Science and Engineering, School of Materials and Chemical Technology, Tokyo Institute of Technology, Tokyo 152-8552, Japan.

In this study, hydrogen boride films are fabricated by ion-exchange treatment on magnesium diboride (MgB) films under ambient temperature and pressure. We prepared oriented MgB films on strontium titanate (SrTiO) substrates using pulsed laser deposition (PLD). Subsequently, these films were treated with ion exchangers in acetonitrile solution.

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Polymer Optical Microcavity Sensor for Volatile Organic Compounds with Distinct Selectivity toward Aromatic Hydrocarbons.

ACS Omega

August 2021

Department of Materials Science, Faculty of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8573, Japan.

A whispering-gallery mode (WGM) optical resonance sensor for volatile organic compounds (VOCs) is developed from polystyrene (PS) microspheres doped with fluorescent β-cyano-appended oligo(-phenylenevinylene) (β-COPV). The β-COPV-doped PS microspheres (MS) are formed by the miniemulsion method in a binary solvent. MS expand upon permeation of VOCs into the PS matrix and exhibit a spectral shift of the WGM resonance peak.

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Solvophobicity-directed assembly of microporous molecular crystals.

Commun Chem

August 2021

Department of Materials Science, Faculty of Pure and Applied Sciences, and Tsukuba Research Center for Energy Materials Science (TREMS), University of Tsukuba, Tsukuba, Ibaraki, Japan.

Dense packing is a universal tendency of organic molecules in the solid state. Typical porous crystals utilize reticular strong intermolecular bonding networks to overcome this principle. Here, we report a solvophobicity-based methodology for assembling discrete molecules into a porous form and succeed in synthesizing isostructural porous polymorphs of an amphiphilic aromatic molecule PyMes.

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Using scanning tunneling microscopy (STM) and density functional theory (DFT) calculations, we directly determine the spatial and energetic distributions of superatom molecular orbitals (SAMOs) of an Li@C monolayer adsorbed on a Cu(111) surface. Utilizing a weakly bonded [Li@C] NTf (NTf: bis(trifluoromethanesulfonyl)imide) salt makes it possible to produce a Li@C monolayer with high concentration of Li@C molecules. Because of the very uniform adsorption geometry of Li@C on Cu(111), the p-SAMO, populated the upper hemisphere of the molecule, exhibits an isotropic and delocalized nature, with an energy that is significantly lower compared to that of C.

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The formation of C-F···H-C "hydrogen bonds" has been a controversial subject because, in principle, fluorine is hardly an acceptor for less acidic protons contrasting to the C-F···H-O and C-F···H-N hydrogen bonds. Nevertheless, the interaction is emerging as a powerful implement for confining the torsional rotation in the design of fully coplanar π-conjugated polymers. Heretofore, no evidence of the C-F···H-C interaction has been observed in solutions.

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Heme binds to a parallel-stranded G-quadruplex DNA to form a peroxidase-mimicking heme-DNAzyme. An interpolyelectrolyte complex between the heme-DNAzyme and a cationic copolymer possessing protonated amino groups was characterized and the peroxidase activity of the complex was evaluated to elucidate the effect of the polymer on the catalytic activity of the heme-DNAzyme. We found that the catalytic activity of the heme-DNAzyme is enhanced through the formation of the interpolyelectrolyte complex due to the general acid catalysis of protonated amino groups of the polymer, enhancing the formation of the iron(IV)oxo porphyrin π-cation radical intermediate known as Compound I.

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Article Synopsis
  • - The catalytic cycle of a heme-DNAzyme involves a key intermediate, an iron(IV)oxo compound, created through the breaking of an O-O bond from a hydroperoxo ligand, similar to the functioning of heme enzymes like horseradish peroxidase (HRP).
  • - Research included testing chemically modified hemes with different electron densities and parallel-stranded G-quadruplex DNAs to study how these factors impact the catalytic activity of the heme-DNAzyme.
  • - Results showed that the DNAzyme's activity can be boosted by increasing the electron density of the heme and utilizing surrounding adenine bases, clarifying the relationship between the heme structure and its functional performance.
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The advanced treatment of hydrogen bonding in quantum crystallography.

J Appl Crystallogr

June 2021

Universität Bern, Departement für Chemie, Biochemie und Pharmazie, Freiestrasse 3, 3012 Bern, Switzerland.

Although hydrogen bonding is one of the most important motifs in chemistry and biology, H-atom parameters are especially problematic to refine against X-ray diffraction data. New developments in quantum crystallography offer a remedy. This article reports how hydrogen bonds are treated in three different quantum-crystallographic methods: Hirshfeld atom refinement (HAR), HAR coupled to extremely localized molecular orbitals and X-ray wavefunction refinement.

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Solvent-dependent /-isomerization and self-assembly of triply helical complexes bearing a pivot part.

Chem Sci

April 2021

Faculty of Pure and Applied Sciences and Tsukuba Research Center for Energy Materials Science (TREMS), University of Tsukuba 1-1-1 Tennodai, Tsukuba Ibaraki 305-8571 Japan

Tris-chelate metal complexes of unsymmetrical bidentate ligands can form two geometric stereoisomers, () and () isomers. Due to the small difference in their properties, the highly-selective synthesis of one of the isomers is challenging. We now designed a series of tripodal ligands with a tris(3-(2-(methyleneoxy)ethoxy)phenyl)methane pivot.

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Synthesis of Pyrrole-Based Poly(arylenevinylene)s via Co-Catalyzed Hydroarylation of Alkynes.

Macromol Rapid Commun

August 2021

Tsukuba Research Center for Energy Materials Science (TREMS), Graduate School of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8573, Japan.

Polyaddition via the Co-catalyzed hydroarylation of 1-(2-pyrimidinyl)pyrrole with aromatic diynes affords poly(arylenevinylene)s under mild conditions. This reaction avoids production of stoichiometric amounts of by-products. Although structural analysis of the obtained polymers reveals the presence of 1,1-vinylidene unit, switching the counter anion of the Co catalyst and steric hindrance of the diyne monomers improves the regioselectivity of the polymers.

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