24,290 results match your criteria: "Tokyo University of Agriculture & Technology 2-24-16 Naka-machi[Affiliation]"

Low-cost automated cell counting module fabricated using CNC milling and soft lithography.

HardwareX

December 2024

Department of Applied Physics, Graduate School of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan.

Cell counting is one of the basic and essential procedures that researchers in cell biology, bioengineering, and other related fields learn at the outset. Systems based on various measurement principles are commercially available, and each has its own advantages and disadvantages in terms of performance, cost, and footprint. Herein, we developed a cost-effective, scalable, and compact module that enables cell counting with reasonable accuracy, throughput, and sensitivity.

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Brain physiology during photoperiod-related caste determination in the primitively eusocial wasp Polistes jokahamae.

Sci Rep

December 2024

Insect Design Technology Group, Division of Insect Advanced Technology, Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), 1-2 Owashi, Tsukuba, 305-8634, Ibaraki, Japan.

Adult females of the primitively eusocial wasp Polistes jokahamae can change caste in response to photoperiod length. Short-day photoperiod females store more lipids but have less developed ovaries for hibernation (becoming gynes), whereas long-day photoperiod females have fewer lipid stores but more developed ovaries under queenless conditions (becoming egg-laying workers). To explore the physiological mechanisms underlying photoperiod-related caste determination, analyses of gene expression levels in the brains of short- or long-day females were performed.

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Article Synopsis
  • Excavations for urban development can lead to soil and groundwater contamination with geogenic arsenic (As), necessitating effective management strategies due to the large volume of soil being moved annually.
  • The study analyzed soil samples from Tokyo’s Yurakucho and Kanto Loam Formations, finding higher total arsenic concentrations and water-soluble As in the Yurakucho Formation compared to the Kanto Loam Formation.
  • It identified that arsenic is mostly found in sulfide forms in the Yurakucho Formation, emphasizing the need to understand arsenic’s chemical forms to evaluate its environmental risks during excavation processes.
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Purpose: Brain iron deficiency is known to cause dopaminergic dysfunction in people with restless legs syndrome. Considering the role that dopamine plays in the wake-promoting system, we speculated that iron deficiency may contribute to the development of excessive daytime sleepiness (EDS). Therefore, we conducted the present study to examine the association between iron intake and EDS in the general population.

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Are Amphibian Eggs a Precious Food Resource for (Amphibia: Urodela) in Spring?

Zoolog Sci

December 2024

Graduate School of Agriculture and Life Science, Hirosaki University, Hirosaki, Aomori 036-8561, Japan.

Most true predators are generalists, and it is difficult to examine their actual diets in the wild. In many cases, the prey that experience a large impact are also not well known. Amphibians are generalist predators that prey mainly on insects, and amphibian species active beginning in spring are considered to prey on food resources other than insects in this season due to the low number of insects.

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In ectotherms, body size differences between latitudes resulting from shorter activity periods at higher latitudes may disappear due to higher growth rates. Although such latitudinal variations have been examined for various taxa, only a few studies have examined such variations in Japanese vertebrates. is widely distributed in the northern part of Honshu, Japan, and although their larval period in the wild is shorter at high latitudes, there is no latitudinal variation in the body size of juveniles in the wild.

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How does the polymer type affect the rate of water evaporation from polymer solutions?

Phys Chem Chem Phys

December 2024

Graduate School of Bio-Application and Systems Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-Cho, Koganei, Tokyo, 184-8588, Japan.

Article Synopsis
  • Drying aqueous polymer solutions is a common method for creating polymer films, but the effects of concentrated polymers on evaporation rates are not fully understood.
  • * Researchers studied the drying of three different polymers (PVA, poly(vinyl pyrrolidone), and poly(ethylene glycol)) and found that water evaporation rates dropped significantly, with PVA showing the largest decrease.
  • * The study revealed that the accumulation of polymers near the drying interface affects the evaporation rate, and the diffusivity of the polymer is key to understanding this process.
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Time-Resolved Probing of the Iodobenzene C-Band Using XUV-Induced Electron Transfer Dynamics.

ACS Phys Chem Au

November 2024

Chemistry Research Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3TA, United Kingdom.

Time-resolved extreme ultraviolet spectroscopy was used to investigate photodissociation within the iodobenzene C-band. The carbon-iodine bond of iodobenzene was photolyzed at 200 nm, and the ensuing dynamics were probed at 10.3 nm (120 eV) over a 4 ps range.

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Elevated concentrations of manganese (Mn) and zinc (Zn) in water bodies can disrupt ecosystems and damage aquatic life. However, the mechanisms underlying the removal of Mn and Zn under dynamic conditions and the optimal hydraulic retention time (HRT) for passive treatment plants remain unclear. Here, a pilot-scale passive treatment system for the removal of Mn and Zn from legacy mine drainage in northern Japan is proposed; it was performed at circumneutral pH for 152 days.

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Genome-wide identification and expression analysis of phosphate-sensing SPX proteins in oats.

Front Genet

November 2024

Institute of Hybrid Wheat, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, China.

Article Synopsis
  • - Phosphorus is essential for plant growth, but its deficiency in soil limits crop yields, with SPXs playing key roles in phosphate transport and absorption in oats.
  • - A genome-wide analysis of 169 SPXs from hexaploid oat and related species revealed that these genes arose from duplication events and are under strong purifying selection.
  • - The study found that SPXs are involved in responses not only to phosphorus deficiency, but also to various abiotic stresses, with specific genes showing significant resistance to low phosphorus, salt, and drought conditions.
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This study aimed to determine the feasibility of using perfusion computed tomography (CT) to assess blood flow in different regions of the stomach in dogs. Dynamic perfusion CT scans were conducted on five beagle dogs, and blood flow analysis was performed using the maximum slope and Patlak plot methods. The findings revealed significant variations in blood flow among the fundus, body, and pylorus of the stomach.

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Hoof disorders are crucial factors leading to dairy cattle culling. These disorders are difficult to detect, diagnose, and record, causing animal health problems and serious economic losses. The coronet score is a new hoof health indicator developed by the Dairy Herd Improvement Program of Japan.

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The Definition of RNA Age Related to RNA Sequence Changes.

Wiley Interdiscip Rev RNA

December 2024

Department of Aquatic Bioscience, Graduate School of Agricultural and Life Science, The University of Tokyo, Tokyo, Japan.

Ribonucleic acid (RNA) undergoes dynamic changes in its structure and function under various intracellular and extracellular conditions over time. However, there is a lack of research on the concept of the RNA age to describe its diverse fates. This study proposes a definition of RNA age to address this issue.

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Trajectories of plant-based diet indices and the associated risk of hypertension among Chinese adults: a cohort study based on the China Health and Nutrition Survey 2004-2015.

Nutr J

December 2024

Shanxi Bethune Hospital, Shanxi Academy of Medical Sciences, Third Hospital of Shanxi Medical University, Tongji Shanxi Hospital, No. 99 Longcheng Street, Taiyuan, China.

Background: Plant-based diets have been found to be associated with hypertension. Dietary intake is a dynamic and changing process that can be better characterized by trajectories of dietary indices. However, the associations between plant-based diet trajectories and hypertension over time remained unknown.

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Loss of ERα involved-HER2 induction mediated by the FOXO3a signaling pathway in fulvestrant-resistant breast cancer.

Biochem Biophys Res Commun

January 2025

Cooperative Major in Advanced Health Science, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan; Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei-shi, Tokyo, 184-8588, Japan; Inada Research Team, Institute of Global Innovation Research, Tokyo University of Agriculture and Technology, 2-24-16 Nakacho, Koganei, Tokyo, 184-8588, Japan. Electronic address:

Article Synopsis
  • * In fulvestrant-resistant breast cancer cells (Ful-R), a loss of ERα and decreased levels of the transcriptional regulator FOXO3a occur, resulting in increased expression of HER2 and enhanced cell proliferation.
  • * Targeting FOXO3a may offer a potential therapeutic strategy for treating HER2-positive, estrogen, and progesterone receptor-negative aggressive breast cancers that have developed resistance to fulvestrant.
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Orofacial morphology in mammals plays a critical role in essential life functions such as feeding and communication, which are influenced by the shapes of these anatomical structures. Bats are known to exhibit highly diversified orofacial morphotypes within their clade, reflecting their varied diets and echolocation behaviors. The presence of bony discontinuities between the premaxilla and maxilla or among the premaxillae is a notable feature of bat orofacial morphology, observed in certain lineages.

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Article Synopsis
  • Human milk oligosaccharides (HMOs) are crucial for infant development and represent a significant component of human milk, with LacNAc being a key intermediate in HMO synthesis.
  • Current methods for producing LacNAc on a large scale are lacking, highlighting the need for an efficient synthetic process.
  • This study successfully developed a cost-effective one-pot multienzyme method to synthesize LacNAc at over 90% yield using crude enzymes, paving the way for potential industrial production and future HMO synthesis.
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Enhanced prediction of protein functional identity through the integration of sequence and structural features.

Comput Struct Biotechnol J

December 2024

Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.

Article Synopsis
  • * This study developed a method to predict if two proteins perform the same enzymatic reaction by analyzing their sequence and structural similarities with the help of AlphaFold2's predicted models.
  • * The findings showed that a LightGBM-based model outperformed others, and that using both sequence and structural data significantly enhances the accuracy of predicting protein functions.
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Classical swine fever (CSF) re-emerged in Japan in 2018, with the epidemic virus identified as genotype 2.1, which is moderately virulent and more difficult to detect and control than the highly virulent strain. Domestic pigs were administered with GPE strain live attenuated vaccine (GPE vaccine) for outbreak management.

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Fusarium wilt caused by Fusarium oxysporum f. sp. cubense (Foc) tropical race 4 (TR4) severely affects banana production worldwide.

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We investigated potential germline-specific radiosensitive biomarkers in the testes of large Japanese field mice (Apodemus speciosus) exposed to low-dose-rate (LDR) radiation after the Fukushima accident. Fukushima wild mice testes were analysed via RNA-sequencing to identify genes differentially expressed in the breeding and non-breeding seasons when compared to controls. Results revealed significant changes during the breeding season, with Lsp1 showing a considerable upregulation, while Ptprk and Tspear exhibited significant reductions.

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Serratia sp. ATCC 39006 has two tandemly positioned genes, ser4 and ser5, both annotated as sugar aminotransferases, in a putative secondary metabolite biosynthetic gene cluster. Ser5 possesses a complete fold-type I aminotransferase fold, while Ser4 lacks the N- and C-terminal regions and a catalytically important lysine residue of fold-type I aminotransferase.

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Pollen has an extraordinary ability to convert from a dry state to an extremely rapidly growing state. During pollination, pollen receives water and Ca from the contacting pistil, which will be a directional cue for pollen tube germination. The subsequent rapid activation of directional vesicular transport must support the pollen tube growth, but the molecular mechanism leading to this process is largely unknown.

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Article Synopsis
  • PRRSV is a significant virus affecting the swine industry, and this study is the first to report NADC34-like strains found in Japan.
  • Serum samples from 18 piglets in Okinawa were analyzed, showing all samples matched a specific sublineage, identified as sublineage 1.5 of Lineage 1.
  • Although NADC34-like strains are known to cause severe outbreaks, the farm experienced only a temporary spike in piglet mortality, indicating a need for further research on these strains and the potential for new variants.
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Article Synopsis
  • Invasive raccoons in Hokkaido, Japan, are potential carriers of the canine distemper virus, with a study analyzing 611 serum samples revealing higher infection rates in 2007, 2021, and 2022 compared to 2008-2012, indicating outbreak occurrences during those years.
  • Logistic regression showed that raccoon population density and environmental factors, like residential area ratios, were linked to seropositivity rates, particularly highlighting changes over the years from forest to residential areas.
  • Ongoing monitoring and improved raccoon control efforts are crucial to prevent disease spread to native wildlife like raccoon dogs and foxes, as well as to protect domestic dogs from health risks.
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