4,072 results match your criteria: "Tata Institute of Fundamental Research; shivaprasad@ncbs.res.in.[Affiliation]"

Platinum Stabilises a Molten-Globule Conformation of a Small Globular Cytosolic Protein SUMO1.

Chem Asian J

October 2024

Department of Chemical Sciences, Tata Institute of Fundamental Research, Dr Homi Bhabha Road, Colaba, Mumbai, 400005, India.

Proteins are generally resistant to large conformational changes under physiological conditions. Here, we show that platinum (Pt(II)), which is widely-used metal centre in cancer therapeutic drugs, binds to a cytosolic protein, small ubiquitin-like modifier 1 (SUMO1), under physiological conditions and changes its conformation to a molten globule (MG). Mass spectrometry (ICP-MS) studies confirmed stoichiometric Pt(II) binding to SUMO1.

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We analyze the possibility of symmetry-lowering induced by pseudo-Jahn-Teller interactions in six previously studied azaphenalenes that are known to have their first excited singlet state (S) lower in energy than the triplet state (T). The primary aim of this study is to explore whether Hund's rule violation is observed in these molecules when their structures are distorted from or point group symmetries by vibronic coupling. Along two interatomic distances connecting these point groups to their subgroups or , we relaxed the other internal degrees of freedom and calculated two-dimensional potential energy subsurfaces.

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The presence of loss mechanisms governed by empirical timescales can profoundly affect the dynamics in molecular systems, leading to changes in their spectra. However, incorporation of these effects along with the system's interaction with the thermal dissipative environments proves to be challenging. In this work, we demonstrate the possibility of utilizing the recently developed path integral Lindblad dynamics (PILD) method to study the linear spectra of molecular aggregates.

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The pursuit of sustainable, carbon-free separation technology hinges on the efficient separation of gas mixtures with high separation factors and flow rates, i. e. high permselectivity.

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Wastewater surveillance in post-omicron silent phase uncovers silent waves and cryptic transmission of SARS-CoV-2 variants; a yearlong study in Western India.

Sci Total Environ

December 2024

National Collection of Industrial Microorganisms (NCIM), Biochemical Sciences Division, CSIR-National Chemical Laboratory (NCL), Pune 411008, Maharashtra, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, Uttar Pradesh, India. Electronic address:

Article Synopsis
  • Tracking and monitoring SARS-CoV-2 variants has become complex due to reduced clinical testing, prompting a study of wastewater-based epidemiology (WBE) in Pune, India, to enhance variant surveillance.
  • Over 1,100 wastewater samples were analyzed, revealing "silent waves" of high viral load that occurred before clinical cases, indicating possible hidden transmission and allowing early detection of variants like XBB up to 253 days before they appeared in clinical data.
  • The study demonstrated that WBE captures a wider variety of circulating variants, providing valuable insights for public health officials to better manage and respond to potential future COVID-19 waves amidst decreasing clinical testing.
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Mass and heat transfer in audible sound driven bubbles.

Ultrason Sonochem

December 2024

International Centre for Theoretical Sciences, Tata Institute of Fundamental Research, Bengaluru 560089, India.

Article Synopsis
  • Most research on sonoluminescence and sonochemistry focuses on frequencies above 20 kHz, leaving a gap in understanding bubble dynamics at audible frequencies.
  • The study introduces a hybrid modeling approach that combines complex and simpler models to predict heat and mass transfer in bubbles influenced by sound at 17.8 kHz.
  • Results show significant deviations between the models at lower frequencies, with the simpler model overestimating bubble size and trapped vapor but underestimating temperature and pressure, highlighting the need for more research in this frequency range.
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Evolutionary Adaptation in Heterogeneous and Changing Environments.

Evolution

December 2024

Department of Physics and Astronomy, University of Pennsylvania, Philadelphia, PA 19104, United States.

Organisms that are adapting to long-term environmental change almost always deal with multiple environments and trade-offs that affect their optimal phenotypic strategy. Here, we combine the idea of repeated variation or heterogeneity, like seasonal shifts, with long-term directional dynamics. Using the framework of fitness sets, we determine the dynamics of the optimal phenotype in two competing environments encountered with different frequencies, one of which changes with time.

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Uma Ramakrishnan.

Curr Biol

October 2024

National Centre for Biological Sciences, Tata Institute of Fundamental Research, Bellary Road, Bangalore, Karnataka 560065, India. Electronic address:

Interview with Uma Ramakrishnan, who studies the genetics of Indian biodiversity at the National Centre for Biological Sciences, Tata Institute of Fundamental Research.

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Researchers in the Global South (GS, developing countries) make valuable contributions to the field of comparative physiology, but face economic and scientific disparities and several unique challenges compared with colleagues in the Global North (developed countries). This Perspective highlights some of the challenges, knowledge gaps and disparities in opportunity faced by GS researchers, especially those at early-career stages. We propose collaborative solutions to help address these issues, and advocate for promoting investment and cultural and societal change for a more inclusive research community.

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Article Synopsis
  • The study investigates how the bacterium S. maltophilia resists and detoxifies arsenic, despite the overall limited understanding in this area.
  • Advanced analytical techniques revealed that S. maltophilia shows minimal changes on its cell surface when exposed to arsenic, but it does accumulate arsenic internally.
  • The research found that S. maltophilia activates various protective enzymes and possesses specific genes that facilitate arsenic reduction and detoxification, highlighting a complex molecular mechanism for bioremediation.
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Article Synopsis
  • * Recent efforts to stop smoking haven't been put into action yet, and it’s important to see what could happen if smoking rates stay the same or improve.
  • * Researchers used models to predict health outcomes by 2050 based on different scenarios of smoking rates, showing that cutting smoking could greatly improve health and life expectancy.
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  • The study focuses on synthesizing various bis-amidinate indium(III) monochlorides by reacting specific Li-amidinate ligands with InCl.
  • Single crystal X-ray analysis shows that these compounds feature an In(III) center coordinated with two amidinate ligands, creating a distorted trigonal bipyramidal geometry.
  • The photophysical properties of these compounds were examined, revealing that they are emissive in solution, with the 9-anthryl compound achieving a quantum yield of 45.5% and a lifetime of 11 ns in dichloromethane.
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  • Scientists from 34 labs in 19 countries worked together to measure certain fats (ceramides) in human blood using special techniques.
  • They used both standard methods and their own methods to get very accurate and consistent results.
  • The study helps improve future medical tests and treatments by providing reliable information about these fats in blood samples.
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Adenosine triphosphate (ATP), ubiquitous in all living organisms, is conventionally recognized as a fundamental energy currency essential for a myriad of cellular processes. While its traditional role in energy metabolism requires only micromolar concentrations, the cellular content of ATP has been found to be significantly higher at the millimolar level. Recent studies have attempted to correlate this higher concentration of ATP with its nonenergetic role in maintaining protein homeostasis, leaving the investigation of ATP's nontrivial activities in biology an open question.

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Apolipoprotein E4 (apoE4) is the strongest genetic risk factor for Alzheimer's disease (AD). However, structural differences between apoE4 and the AD-neutral isoform, apoE3, still remain unclear. Recent studies suggest that apoE4 harbors intermediates.

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Article Synopsis
  • * Findings revealed that male mice experienced a significant decrease in the survival and differentiation of adult-born neurons compared to female mice, which showed no such decline.
  • * Gene expression analysis highlighted sex differences in thyroid hormone receptor genes and related pathways, emphasizing the need to consider sex as a crucial factor in thyroid hormone's effects on neurogenesis.
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Reconfiguring two shortest paths in a graph means modifying one shortest path to the other by changing one vertex at a time so that all the intermediate paths are also shortest paths. This problem has several natural applications, namely: (a) repaving road networks, (b) rerouting data packets in a synchronous multiprocessing setting, (c) the shipping container stowage problem, and (d) the train marshalling problem. When modelled as graph problems, (a) is the most general case while (b), (c), (d) are restrictions to different graph classes.

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Natural selection has driven the convergence toward a selected set of osmolytes, endowing them with the necessary efficiency to manage stress arising from salt diversity. This study combines atomistic simulations and experiments to investigate how two osmolytes, glycine and betaine, individually modulate the Hofmeister ion ordering of alkali metal salts (LiCl, KCl, and CsCl) near a charged silica interface. Both osmolytes are found to prevent salt-induced aggregation of the charged entities, yet their mode and degree of relative modulation depend on their intricate interplay with specific salt cations.

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  • Fractional quantum Hall (FQH) phases involve strong electronic interactions producing anyonic quasiparticles with unique properties, while integer quantum Hall (IQH) effects arise from the band topology of non-interacting electrons.* -
  • Our research reveals unexpected "super-universality" in the critical behavior of FQH and IQH transitions, where both types exhibit the same critical scaling exponent (κ = 0.41 ± 0.02) and localization length exponent (γ = 2.4 ± 0.2).* -
  • Using ultra-high mobility trilayer graphene devices, we demonstrate that these consistent critical exponents can be observed with short-range disorder, unlike previous studies that showed variability in conventional
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The present study discloses the fabrication of efficient p-n heterojunctions using n-type polymeric bulk carbon nitride (b-CN, = 2.7 eV) or exfoliated nanosheets of carbon nitride (NSCN, = 2.9 eV) with p-type spinel ferrite CaFeO (CFO, = 1.

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  • Pial collaterals help protect against ischemic damage and improve outcomes for stroke patients, but the development process for these collaterals is not well understood.
  • This research used advanced imaging techniques to reveal that pial collateral arteries form from the growth and connection of existing arterial tips during embryonic development, influenced by a specific receptor.
  • Unlike coronary collateral arteries in the heart, the formation of brain collaterals does not rely on the Cxcr4 receptor, indicating different developmental mechanisms at play for each organ.
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  • Recent research highlights the therapeutic potential of serotonergic psychedelics, specifically focusing on 2,5-dimethoxy-4-iodoamphetamine (DOI) and its anxiety-reducing effects.
  • The study reveals that GABAergic interneurons in the ventral hippocampus, particularly PV-positive interneurons, play a crucial role in the anxiolytic effects of DOI by interacting with serotonin (5-HT) receptors.
  • Findings suggest that enhancing the activity of these interneurons in the hippocampus leads to increased anxiety relief, emphasizing the significance of 5-HT receptors in the vHpc's CA1/subiculum region for the psychedelic's therapeutic effects.
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Notch-Delta-Jagged (NDJ) signaling among neighboring cells contributes crucially to spatiotemporal pattern formation and developmental decision-making. Despite numerous detailed mathematical models, their high-dimensionality parametric space limits analytical treatment, especially regarding local microenvironmental fluctuations. Using the low-dimensional dynamics of the recently postulated least microenvironmental uncertainty principle (LEUP) framework, we showcase how the LEUP formalism recapitulates a noisy NDJ spatial patterning.

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Health benefits and risks of fermented foods-the PIMENTO initiative.

Front Nutr

September 2024

Research Division Microbial Food Systems, Agroscope, Berne, Switzerland.

Article Synopsis
  • * Seven of the reviews will look into clinical and biological effects of FF on various health indicators across organ systems, while the other nine will explore broader topics like bioactive compounds, safety, and personalized nutrition related to FF.
  • * Each review will consist of a systematic analysis of human studies, insights into the mechanisms behind observed health outcomes, and characterization of the FF being studied, culminating in a strategic roadmap for future research in the field.
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