390 results match your criteria: "Tübitak Marmara Research Center[Affiliation]"
Sci Rep
January 2025
TUBITAK Marmara Research Center, Climate Change and Life Sciences, Biotechnology Research Group, 41470, Kocaeli, Turkey.
In this study, the in vitro photodynamic therapy (PDT) activity of two zinc phthalocyanines (ZnPc1 and ZnPc2) was systematically examined in human umbilical vein endothelial cells, focusing on PDT-induced cytotoxicity, reactive oxygen species (ROS) generation, and inhibition of angiogenic processes. Both the ZnPcs demonstrated minimal cytotoxicity in the absence of light, confirming their safety as photosensitizers. ZnPc-PDT led to significant cell death via apoptosis.
View Article and Find Full Text PDFL., a medicinal plant renowned for its pharmaceutical alkaloids, has captivated scientific interest due to its rich secondary metabolite profile. This study explores a novel approach to manipulating alkaloid biosynthesis pathways by integrating virus-induced gene silencing (VIGS) with macerozyme enzyme pretreatment.
View Article and Find Full Text PDFExp Hematol
January 2025
Department of Medical Genetics Department, Bezmialem Vakif University Faculty of Medicine, Istanbul, Turkey.
Hematological malignancies encompass a diverse array of subtypes, contributing to substantial heterogeneity that poses challenges in predicting clinical outcomes. Leveraging the capabilities of nuclear magnetic resonance holds substantial promise in the detection of serum biomarkers and individual metabolic alterations in patients. The study involved the analysis of the sera from patients with acute myeloid leukemia, chronic lymphocytic leukemia, and non-Hodgkin lymphoma to investigate the impacted metabolites and their associated pathways.
View Article and Find Full Text PDFAnal Methods
January 2025
Department of Biochemistry and Molecular Biology, Faculty of Medicine, Acibadem Mehmet Ali Aydinlar University, Istanbul 34450, Turkey.
ACS Appl Mater Interfaces
January 2025
Department of Chemical Engineering, Bogazici University, TR-34342 Istanbul, Türkiye.
A new member is incorporated into the SERS active materials family daily as a consequence of advances in materials science. Furthermore, it has been demonstrated that MXenes, which display remarkable physicochemical characteristics, are also encompassed within this family. This Review offers a comprehensive and systematic assessment of the potential of MXene structures in the context of SERS applications.
View Article and Find Full Text PDFDiagn Microbiol Infect Dis
December 2024
TÜBİTAK Marmara Research Center, 41470, Gebze, Kocaeli, Türkiye.
The global expand of SARS-CoV-2 has highlighted the importance of early and rapid detection to control the spread of a pandemic. In this study, specific and high-affinity monoclonal antibodies (mAbs) were developed against the conserved nucleocapsid protein of the virus among variants. Appropriate antibody pairs were selected to develop a lateral flow immunoassay (LFIA) and an unconventional application of an amperometric biosensor using unmodified screen-printed electrodes and external magnetic bead preparation.
View Article and Find Full Text PDFJ Colloid Interface Sci
March 2025
Department of Chemical Engineering, Bogazici University, TR-34342, Istanbul, Turkey; TUBITAK Marmara Research Center, Material Institute, Gebze 41470, Turkey. Electronic address:
Food Chem
March 2025
Department of Biochemistry, Memorial University of Newfoundland, St. John 's, NL, Canada.
This article presents a comprehensive overview of upcycling commercial nut byproducts (such as Brazil nut, cashew, hazelnut, macadamia, peanut (also known as a legume), pecan, pine nut, pistachio, and walnut) for food, nutraceutical, and pharmaceutical applications. Upcycling nut byproducts, namely husk/hull, hard shell, brown skin, defatted flour/meal/cake, pine cone, cashew nut shell liquid, cashew apple, walnut septum, and dreg/okara, has great potential, not only to reduce/minimise waste, but also to fit within the circular economy concept. Each byproduct has its own unique functional properties, which can bring significant value.
View Article and Find Full Text PDFACS Omega
November 2024
Department of Chemical Engineering, Faculty of Chemical and Metallurgical, Yıldız Technical University, İstanbul 34210, Türkiye.
Lithium-rich layered oxide materials (Li-NMC) are considered a potential cathode material for next-generation batteries, thanks to their high theoretical specific capacity. Large potential drop and capacity loss after long cycles are the main obstacles to expanding commercial utilization of Li-NMC. In the past decade, great efforts have been made to overcome those issues of Li-NMCs.
View Article and Find Full Text PDFMicromachines (Basel)
October 2024
CBRN Defense Technologies R&D Group, Materials and Process Technologies, The Scientific and Technological Research Council of Türkiye (TÜBİTAK), Marmara Research Center, Kocaeli 41470, Türkiye.
Biological warfare agents are infectious microorganisms or toxins capable of harming or killing humans. is a potential bioterrorism agent that is highly infectious, even at very low doses. Biosensors for biological warfare agents are simple yet reliable point-of-care analytical tools.
View Article and Find Full Text PDFBiotechnol J
November 2024
Medical Biotechnology, Life Sciences, TUBITAK Marmara Research Center, Kocaeli, Türkiye.
A promising approach to treat colorectal cancer (CRC) involves combining chemotherapy, epigenetics, and gene therapy to combat drug resistance. Multifunctional nanocarriers have emerged as a valuable tool for targeted CRC therapy. By delivering multiple treatments directly to cancer cells, these nanocarriers offer the potential for improved outcomes and reduced side effects.
View Article and Find Full Text PDFACS Omega
November 2024
Faculty of Science and Art, Department of Chemistry, İnönü Üniversity, Malatya 44280, Turkey.
Highly crystallized Co and CoO nanoparticles embedded in an N-doped amorphous carbon matrix have been successfully fabricated by the molten-salt-assisted method using KClO and zeolitic imidazolate framework-12 (ZIF-12). Pyrolysis of ZIF-12 with different concentrations of KClO leads to embedded Co and CoO nanoparticles in a conductive amorphous carbon network. The impact of salt concentration on the morphology and electrochemical performance of these composites was investigated for electrochemical sensor applications.
View Article and Find Full Text PDFDalton Trans
December 2024
Department of Chemistry, Faculty of Science, Karadeniz Technical University, 61080 Trabzon, Turkey.
A series of new cationic first-row transition metal complexes of [Mn(sac)(HO)(tpma)](sac)·HO (Mn), [(μ-O){FeCl(tpma)}](sac)·3HO (Fe), [Co(sac)(HO)(tpma)](sac)·HO (Co), [Ni(HO)(tpma)](sac)·2HO (Ni), [Cu(sac)(tpma)](sac) (Cu) and [Zn(sac)(HO)(tpma)](sac) (Zn), where sac = saccharinate and tpma = tris(2-pyridylmethyl)amine, were synthesized and structurally characterized by elemental analysis, UV-Vis, IR, ESI-MS, NMR, X-ray diffraction and conductivity measurements. The cytotoxic activity of the metal complexes was evaluated against lung carcinoma (A549), breast adenocarcinoma (MCF7), colon (HT29), and normal BEAS-2B cell lines. Mn and Fe displayed potent cytotoxic activity in all cell lines with IC values between 1.
View Article and Find Full Text PDFTalanta
February 2025
Water Management and Treatment Technologies Research Group, Climate Change and Sustainability Vice Presidency, TUBITAK Marmara Research Center, 41470, Gebze, Kocaeli, Turkey. Electronic address:
The polychlorinated dibenzo-p-dioxins/furans (PCDD/Fs) and dioxin-like polychlorinated biphenyls (dl-PCBs) are worldwide contaminants, and they tend to accumulate in wide variety of matrices. Therefore, due to the highest accumulation rate and recalcitrancy, their precise quantification makes significant concern about their toxicological effects on both humans and organisms. The objective of the study is that using hydrogen carrier gas instead of helium in gas chromatography with triple quadrupole (GC-MS/MS) systems could contribute to improvements on the analysis of dl-PCBs and PCDD/Fs in environmental matrices.
View Article and Find Full Text PDFBiochem Genet
November 2024
Division of Medical Biology, Department of Basic Medical Sciences, Hamidiye Faculty of Medicine, University of Health Sciences, Istanbul, Turkey.
Environ Res
October 2023
Department of Environmental Engineering, Istanbul Technical University, Istanbul, Ayazaga, 34469, Turkey.
Hydrolysis is the most critical rate-limiting step in the anaerobic digestion (AD) process for most types of substrates. The organic fraction of municipal solid waste (OFMSW) is a rich source for the AD process because of its high degradability. In this study, electrohydrolysis pretreatment was investigated for the OFMSW to overcome the rate-limiting step of hydrolysis.
View Article and Find Full Text PDFTurk J Biol
September 2024
Department of Genetics and Bioengineering, Faculty of Engineering, Yeditepe University, Ataşehir, İstanbul, Turkiye.
Breast cancer is one of the most common cancers and a significant cause of death in females worldwide. For effective breast cancer treatment, using systems with a promising delivery of anticancer agents is an important strategy. Peptide 18 (P18), a tumor-homing peptide, shows a high binding affinity toward breast cancer cells.
View Article and Find Full Text PDFProbiotics Antimicrob Proteins
October 2024
Department of Chemistry, School of Natural Sciences (SNS), National University of Sciences & Technology (NUST), H-12, Islamabad, 44000, Pakistan.
The surge in bacterial growth and the escalating resistance against a multitude of antibiotic drugs have burgeoned into an alarming global threat, necessitating urgent and innovative interventions. In response to this peril, scientists have embarked on the development of advanced biocompatible antibacterial materials, aiming to counteract not only bacterial infections but also the pervasive issue of food spoilage resulting from microbial proliferation. Protein-based biopolymers and their meticulously engineered composites are at the forefront of this endeavor.
View Article and Find Full Text PDFScience
October 2024
Department of Geomatic Engineering, Yildiz Technical University, İstanbul, Türkiye.
The spatiotemporal pattern of surface displacements from large earthquakes provides crucial insights about the deformation of Earth's crust at various scales and the interactions among tectonic plates. However, the lack of extensive and large-scale geodetic networks near such seismic events hinders our thorough understanding of the large-scale crustal deformation resulting from earthquakes. Using Türkiye's extensive and continuous global navigation satellite system (GNSS) network during the moment magnitude 7.
View Article and Find Full Text PDFJ Mol Model
October 2024
University of Tashkent for Applied Sciences, Str. Gavhar 1, 100149, Tashkent, Uzbekistan.
Context: This study addresses the development of sustainable pyridinium ionic liquids (ILs) because of their potential applications in agriculture and pharmaceuticals. Pyridinium-based ILs are known for their low melting points, high thermal stability, and moderate solvation properties. We synthesized three novel pyridinium-based ILs: 1-(2-(isopentyloxy)-2-oxoethyl)pyridin-1-ium chloride, 1-(2-(hexyloxy)-2-oxoethyl)pyridin-1-ium chloride, and 1-(2-(benzyloxy)-2-oxoethyl)pyridin-1-ium chloride.
View Article and Find Full Text PDFLangmuir
October 2024
Faculty of Science and Art, Department of Chemistry, İnönü Üniversity, 44280 Malatya, Turkey.
In this work, we report a study examining how different salt concentrations affect the structure and electrochemical performance of two CoO/C materials designed for the fabrication of an easy, cheap, fast, safe, and useful electrochemical sensor for the detection of Palbociclib (PLB). CoO nanoparticles were successfully created by encapsulating them in N-doped amorphous carbon matrices by using the molten salt-assisted approach. In this process, different amounts of potassium iodate and zeolitic imidazolate framework-12 (ZIF-12) were used, followed by pyrolysis at 800 °C.
View Article and Find Full Text PDFJ Cell Mol Med
September 2024
TUBITAK Marmara Research Center, Life Sciences, TUBITAK, Kocaeli, Turkey.
The aim of this study was to determine the antiviral activity of cannabidiol (CBD) against SARS-CoV-2 infection. CBD is the second most studied cannabinoid obtained from Cannabis plants. We investigated the potential use of CBD, which has so far proven to have a positive effect on different diseases, in the SARS-CoV-2 infection.
View Article and Find Full Text PDFCurr Microbiol
August 2024
Life Sciences, Marmara Research Center, TUBITAK, Kocaeli, Türkiye.
Throughout history, infectious diseases have plagued humanity, with outbreaks occurring regularly worldwide. Not every outbreak affects people globally; however, in the case of Coronavirus Disease 2019 (COVID-19), caused by a novel coronavirus (SARS-CoV-2), it reached a pandemic level within a remarkably short period. Fortunately, advancements in medicine and biotechnology have facilitated swift responses to the disease, resulting in the development of therapeutics and vaccines.
View Article and Find Full Text PDFBMC Infect Dis
August 2024
Department of Medical Microbiology, Istanbul Medipol University, Beykoz, Istanbul, 34815, Türkiye.
Background: Globally, around 7 to 20 million people are believed to be suffering from coinfection with both hepatitis B virus (HBV) and hepatitis C virus (HCV). The loop-mediated isothermal amplification (LAMP) approach, introduced by Notomi and colleagues, has undergone substantial advancements as an effective molecular tool that enables the simultaneous analysis of multiple samples in a single tube.
Methods: The present study examined the simultaneous detection of HBV and HCV in a single tube using melt curve analysis multiplex LAMP (mLAMP), which is based on the identification of unique melting peak temperatures.
Turk J Biol
May 2024
Department of Genetics and Bioengineering, Faculty of Engineering, Yeditepe University, İstanbul, Turkiye.
Background: Nanocarrier-based systems have cultivated significant improvements in prostate cancer therapy. However, the efforts are still limited in clinical applicability, and more research is required for the development of effective strategies. Here, we describe a novel nanoliposomal system for targeted apoptotic gene delivery to prostate cancer.
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