164 results match your criteria: "Syracuse University College of Arts & Sciences[Affiliation]"

Sleepiness, Exertion Fatigue, Arousal, and Vigilant Attention in Persons With Chronic Aphasia.

Am J Speech Lang Pathol

November 2019

Aphasia Lab, Department of Communication Sciences and Disorders, College of Arts and Sciences, Syracuse University, NY.

Purpose Individuals in the acute and chronic stages of stroke recovery often report more daytime sleepiness (Sterr, Herron, Dijk, & Ellis, 2008) and fatigue that qualitatively differs from "normal" feelings of fatigue they experienced prestroke (De Doncker, Dantzer, Ormstad, & Kuppuswamy, 2018). Speech-language pathologists frequently observe signs of fatigue in their clients with aphasia and perceive that client fatigue impedes therapeutic interventions (Riley, 2017). The current study aimed to quantify daytime sleepiness, exertion fatigue, and physiologically measured arousal and vigilant attention in persons with aphasia.

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An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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Evidence for Network-Based Cortical Thickness Reductions in Schizophrenia.

Am J Psychiatry

July 2019

The Department of Psychiatry, Melbourne Neuropsychiatry Centre, University of Melbourne and Melbourne Health, Carlton South, Victoria, Australia (Wannan, Cropley, Bousman, Ganella, T.W. Weickert, C.S. Weickert, McGorry, Velakoulis, Bartholomeusz, Pantelis, Zalesky); Orygen, the National Centre of Excellence in Youth Mental Health, Parkville, Victoria, Australia (Wannan, Ganella, McGorry, Wood, Bartholomeusz); the Centre for Youth Mental Health, University of Melbourne, Parkville, Victoria, Australia (Wannan, Ganella, McGorry, Wood, Bartholomeusz); the Cooperative Research Centre for Mental Health, Victoria, Australia (Wannan, Bousman, Ganella, Everall, Pantelis); North Western Mental Health, Melbourne Health, Parkville, Victoria, Australia (Wannan, Ganella, Everall, Pantelis); Faculty of Health, Arts, and Design, the Brain and Psychological Sciences Research Centre, Swinburne University, Victoria, Australia (Cropley); the Florey Institute for Neurosciences and Mental Health, Parkville, Victoria, Australia (Bousman, Everall, Pantelis); the Department of Electrical and Electronic Engineering, Centre for Neural Engineering, University of Melbourne, Carlton South, Victoria, Australia (Everall, Pantelis); the Melbourne School of Engineering, University of Melbourne, Parkville, Victoria, Australia (Everall, Pantelis, Zalesky); Alberta Children's Hospital Research Institute, University of Calgary, Alberta (Bousman); Hotchkiss Brain Institute, University of Calgary, Alberta (Bousman); the Departments of Medical Genetics, Psychiatry, and Physiology and Pharmacology, University of Calgary, Alberta (Bousman); the Cerebral Imaging Centre, Douglas Mental Health University Institute, Montreal (Chakravarty); the Departments of Psychiatry and Biological and Biomedical Engineering, McGill University, Montreal (Chakravarty); the School of Psychiatry, University of New South Wales, Sydney, Australia (Bruggemann, T.W. Weickert, C.S. Weickert); Neuroscience Research Australia, Sydney, Australia (Bruggemann, T.W. Weickert, C.S. Weickert); the Schizophrenia Research Laboratory, Neuroscience Research Australia, Randwick, New South Wales, Australia (T.W. Weickert, C.S. Weickert); the School of Psychology, University of Birmingham, Edgbaston, U.K. (Wood); the Department of Neuroscience and Physiology, Upstate Medical University, Syracuse, N.Y. (T.W. Weickert, C.S. Weickert); and the Institute of Psychiatry, Psychology, and Neuroscience, King's College London (Everall).

Article Synopsis
  • - The study aimed to explore the relationship between cortical thickness reductions and cortical connectivity networks in schizophrenia, hypothesizing that areas with reduced thickness are well interconnected, forming a network.
  • - Researchers analyzed structural brain images from three groups: patients with first-episode psychosis, chronic schizophrenia, and treatment-resistant schizophrenia, comparing their cortical thickness to healthy controls across 148 regions of the cortex.
  • - Findings revealed significant reductions in cortical thickness, especially in the chronic and treatment-resistant groups, with notable decreases in frontal, temporal, cingulate, and insular regions, and highlighted stronger structural connectivity among the affected areas compared to randomly selected ones.
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Genome to Phenome: Improving Animal Health, Production, and Well-Being - A New USDA Blueprint for Animal Genome Research 2018-2027.

Front Genet

May 2019

Animal Genomics and Improvement Laboratory, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD, United States.

In 2008, a consortium led by the Agricultural Research Service (ARS) and the National Institute for Food and Agriculture (NIFA) published the "Blueprint for USDA Efforts in Agricultural Animal Genomics 2008-2017," which served as a guiding document for research and funding in animal genomics. In the decade that followed, many of the goals set forth in the blueprint were accomplished. However, several other goals require further research.

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Objective: To assess the efficacy of tirasemtiv, a fast skeletal muscle troponin activator, vs. placebo in patients with amyotrophic lateral sclerosis. Methods: VITALITY-ALS (NCT02496767) was a multinational, double-blind, randomized, placebo-controlled clinical trial.

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Columnaris disease has long been recognized as a serious problem worldwide which affects both wild and cultured freshwater fish including the commercially important channel catfish (Ictalurus punctatus). The fundamental molecular mechanisms of the host immune response to the causative agent Flavobacterium columnare remain unclear, though gene expression analysis after the bacterial infection has been conducted. Alternative splicing, a post-transcriptional regulation process to modulate gene expression and increase the proteomic diversity, has not yet been studied in channel catfish following infection with F.

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Satellite telemetry is an increasingly utilized technology in wildlife research, and current devices can track individual animal movements at unprecedented spatial and temporal resolutions. However, as we enter the golden age of satellite telemetry, we need an in-depth understanding of the main technological, species-specific and environmental factors that determine the success and failure of satellite tracking devices across species and habitats. Here, we assess the relative influence of such factors on the ability of satellite telemetry units to provide the expected amount and quality of data by analyzing data from over 3,000 devices deployed on 62 terrestrial species in 167 projects worldwide.

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Polyadenylation sites and their characteristics in the genome of channel catfish (Ictalurus punctatus) as revealed by using RNA-Seq data.

Comp Biochem Physiol Part D Genomics Proteomics

June 2019

Department of Biology, College of Art and Sciences, Syracuse University, Syracuse, NY 13244, USA. Electronic address:

Polyadenylation plays important roles in gene expression regulation in eukaryotes, which typically involves cleavage and poly(A) tail addition at the polyadenylation site (PAS) of the pre-mature mRNA. Many eukaryotic genes contain more than one PASs, termed as alternative polyadenylation (APA). As a crucial post-transcriptional regulation, polyadenylation affects various aspects of RNA metabolism such as mRNA stability, translocation, and translation.

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FOXO genes in channel catfish and their response after bacterial infection.

Dev Comp Immunol

August 2019

Department of Biology, College of Art and Sciences, Syracuse University, Syracuse, NY, 13244, USA. Electronic address:

FOXO proteins are a subgroup of the forkhead family of transcription factors that play crucial roles in lifespan regulation. In addition, FOXO proteins are also involved in immune responses. After a systematic study of FOXO genes in channel catfish, Ictalurus punctatus, seven FOXO genes were identified and characterized, including FOXO1a, FOXO1b, FOXO3a, FOXO3b, FOXO4, FOXO6a and FOXO6b.

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Motile Aeromonas septicemia (MAS) disease caused by a bacterial pathogen, Aeromonas hydrophila, is an emerging but severe disease of catfish. Genetic enhancement of disease resistance is considered to be effective to control the disease. To provide an insight into the genomic basis of MAS disease resistance, in this study, we conducted a genome-wide association study (GWAS) to identify quantitative trait loci (QTL).

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Background: Sex determination mechanisms in teleost fish broadly differ from mammals and birds, with sex chromosomes that are far less differentiated and recombination often occurring along the length of the X and Y chromosomes, posing major challenges for the identification of specific sex determination genes. Here, we take an innovative approach of comparative genome analysis of the genomic sequences of the X chromosome and newly sequenced Y chromosome in the channel catfish.

Results: Using a YY channel catfish as the sequencing template, we generated, assembled, and annotated the Y genome sequence of channel catfish.

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An experiment is reported that studied the effects of spatial embodiment in augmented reality on medical attitudes about the self. College students (N = 90) viewed public service announcements (PSAs) with overlaid virtual fetuses and X-rayed images of lungs on various interfaces representing embodiment-a two-dimensional screen, a three-dimensional (3D) mannequin, and the participants' bodies (3D). Results indicated that PSA messages with richer embodied interfaces increase the sense of "being there," also known as spatial presence (SP), in sequential order; this leads to increased negative emotion regarding smoking cigarettes and an increased willingness to engage with a cigarette cessation campaign.

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Traumatic brain injury (TBI) is a major cause of death and disability worldwide, with mild TBI (mTBI) accounting for 85% of cases. mTBI is also implicated in serious long-term sequelae including second impact syndrome and chronic traumatic encephalopathy. mTBI often goes undiagnosed due to delayed symptom onset and limited sensitivity of conventional assessment measures compared with severe TBI.

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Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation.

BMC Genomics

December 2018

Department of Biology, College of Arts and Sciences, Syracuse University, Syracuse, NY, 13244, USA.

Background: Walking catfish (Clarias batrachus) is a freshwater fish capable of air-breathing and locomotion on land. It usually inhabits various low-oxygen habitats, burrows inside the mudflat, and sometimes "walks" to search for suitable environments during summer. It has evolved accessory air-breathing organs for respiring air and corresponding mechanisms to survive in such challenging environments.

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Heat stress induced alternative splicing in catfish as determined by transcriptome analysis.

Comp Biochem Physiol Part D Genomics Proteomics

March 2019

Department of Biology, College of Art and Sciences, Syracuse University, Syracuse, NY 13244, USA. Electronic address:

Article Synopsis
  • Heat tolerance is crucial for aquaculture species like catfish, especially in a changing climate, and understanding its molecular mechanisms is key.
  • Existing RNA-Seq data was analyzed to examine how heat stress affects alternative splicing in catfish, revealing that heat-intolerant fish exhibit a significant increase in splicing events compared to heat-tolerant ones.
  • The study identified specific genes involved in RNA binding and splicing that are affected by heat stress, contributing to our understanding of heat tolerance in fish.
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The current study was conducted to assess the effects of microinjection of different dosages of guide RNA (gRNA)/Cas9 protein on the mutation rate, embryo survival, embryonic development, hatchability and early fry survival in channel catfish, Ictalurus punctatus. Guide RNAs targeting two of the channel catfish immune-related genes, toll/interleukin 1 receptor domain-containing adapter molecule (TICAM 1) and rhamnose binding lectin (RBL) genes, were designed and prepared. Three dosages of gRNA/Cas9 protein (low, 2.

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The purpose of this publication was to inform surgeons as to the modern state-of-the-art evidence-based guidelines for management of the recurrent laryngeal nerve invaded by malignancy through blending the domains of 1) surgical intraoperative information, 2) preoperative glottic function, and 3) intraoperative real-time electrophysiologic information. These guidelines generated by the International Neural Monitoring Study Group (INMSG) are envisioned to assist the clinical decision-making process involved in recurrent laryngeal nerve management during thyroid surgery by incorporating the important information domains of not only gross surgical findings but also intraoperative recurrent laryngeal nerve functional status and preoperative laryngoscopy findings. These guidelines are presented mainly through algorithmic workflow diagrams for convenience and the ease of application.

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This publication offers modern, state-of-the-art International Neural Monitoring Study Group (INMSG) guidelines based on a detailed review of the recent monitoring literature. The guidelines outline evidence-based definitions of adverse electrophysiologic events, especially loss of signal, and their incorporation in surgical strategy. These recommendations are designed to reduce technique variations, enhance the quality of neural monitoring, and assist surgeons in the clinical decision-making process involved in surgical management of recurrent laryngeal nerve.

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A Review of Molecular Responses of Catfish to Bacterial Diseases and Abiotic Stresses.

Front Physiol

August 2018

Department of Biology, College of Art and Sciences, Syracuse University, Syracuse, NY, United States.

Article Synopsis
  • Catfish is a key aquaculture species in the U.S. but faces threats from bacterial diseases and environmental stresses like high temperatures and low oxygen.
  • Research has focused on the host's response to these challenges, leading to advancements in understanding through genome sequencing and association studies.
  • The article reviews recent findings related to catfish's molecular responses to infections and stress, and highlights progress in identifying genetic factors that contribute to disease resistance and stress tolerance.
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Aims: The current candidate gene and environment interaction (cGxE) study examined whether the effects of an experimentally manipulated psychosocial stressor on self-reported drinking urge and implicit attentional bias for alcohol cues differ as a function of a cumulative genetic score of 5-HTTLPR, MAO-A, DRD4, DAT1 and DRD2 genotypes. The current study also examined whether salivary alpha-amylase level or self-reported anxiety state mediate these cGxE effects.

Short Summary: Individuals with high cumulative genetic risk score of the five monoamergic genotypes showed greater attentional bias toward alcohol cues when exposed to a psychosocial stressor than when not exposed.

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Heterochromatin formation during early embryogenesis is timed precisely, but how this process is regulated remains elusive. We report the discovery of a histone methyltransferase complex whose nuclear accumulation and activation establish the onset of heterochromatin formation in embryos. We find that the inception of heterochromatin generation coincides with the accumulation of the histone H3 lysine 9 (H3K9) methyltransferase MET-2 (SETDB) into nuclear hubs.

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Early stage litter decomposition across biomes.

Sci Total Environ

July 2018

Forest & Nature Lab, Department of Forest and Water Management, Ghent University, Geraardsbergsesteenweg 267, 9090 Gontrode, Belgium. Electronic address:

Through litter decomposition enormous amounts of carbon is emitted to the atmosphere. Numerous large-scale decomposition experiments have been conducted focusing on this fundamental soil process in order to understand the controls on the terrestrial carbon transfer to the atmosphere. However, previous studies were mostly based on site-specific litter and methodologies, adding major uncertainty to syntheses, comparisons and meta-analyses across different experiments and sites.

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