181 results match your criteria: "Sokendai Graduate University for Advanced Studies[Affiliation]"

Article Synopsis
  • The water flea, Daphnia magna, predominantly reproduces asexually in healthy environments, but switches to sexual reproduction in adverse conditions to produce tough, resilient eggs.
  • This study analyzed the swimming patterns of male and female D. magna, revealing that males showed a biased lateral diffusion while females swam in a more uniform manner.
  • The findings indicate that male swimming behavior enhances the likelihood of finding mates, thereby promoting genetic diversity within the population.
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Forms of embryonic nutrition are highly diverse in cartilaginous fishes, which contain oviparity, yolk-sac viviparity and several types of matrotrophic viviparity (histotrophy, oophagy, and placentotrophy). The molecular mechanisms of embryonic nutrition are poorly understood in these animals as few species are capable of reproducing in captivity. Oviparous cartilaginous fishes solely depend on yolk nutrients for their growth and development.

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Transient Response of Basal Ganglia Network in Healthy and Low-Dopamine State.

eNeuro

April 2022

Department of Computational Science and Technology, School of Computer Science and Communication, KTH Royal Institute of Technology, Stockholm, SE-10044, Sweden

The basal ganglia (BG) are crucial for a variety of motor and cognitive functions. Changes induced by persistent low-dopamine (e.g.

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Background: Immigration has been shown to be associated with an increased risk for psychotic experiences, with similar effect sizes for first-generation and second-generation migration (i.e., children whose parents had migrated).

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Massive corals of the genus Porites, common, keystone reef builders in the Indo-Pacific Ocean, are distinguished by their relative stress tolerance and longevity. In order to identify genetic bases of these attributes, we sequenced the complete genome of a massive coral, Porites australiensis. We developed a genome assembly and gene models of comparable quality to those of other coral genomes.

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Background: Cross-sectional studies have suggested that the occurrence of psychotic experiences is associated with loneliness in the general adolescent population. However, there has been a scarcity of prospective longitudinal studies on this topic.

Methods: We investigated the longitudinal association between the presence of psychotic experiences and loneliness among adolescents using data from a population-based birth cohort study (Tokyo Teen Cohort; N = 3171).

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Autistic traits are associated with psychotic experiences in adolescence; however, the mechanisms underlying this relationship are not well understood. Prior research indicates that bullying victimization increases the risk of psychotic experiences in general adolescent populations, and autistic youth are at higher risk of being bullied than their non-autistic peers. Using longitudinal data from general population adolescents aged 10-14 in the Tokyo Teen Cohort study, we tested the hypothesis that bullying is responsible for the association between autistic traits and psychotic experiences in adolescence.

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The anterior pituitary gland regulates growth, metabolism, and reproduction by secreting hormones. Folliculo-stellate (FS) cells are non-endocrine cells located among hormone-producing cells in the anterior pituitary glands. They form follicular lumens, which are sealed by tight junctions (TJs).

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The solid and liquid states of chromatin.

Epigenetics Chromatin

October 2021

Department of Cell Biology, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, AB, Canada.

The review begins with a concise description of the principles of phase separation. This is followed by a comprehensive section on phase separation of chromatin, in which we recount the 60 years history of chromatin aggregation studies, discuss the evidence that chromatin aggregation intrinsically is a physiologically relevant liquid-solid phase separation (LSPS) process driven by chromatin self-interaction, and highlight the recent findings that under specific solution conditions chromatin can undergo liquid-liquid phase separation (LLPS) rather than LSPS. In the next section of the review, we discuss how certain chromatin-associated proteins undergo LLPS in vitro and in vivo.

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Article Synopsis
  • * Evidence suggests GHRd3 was nearly fixed in ancient human and Neanderthal populations but has recently decreased in frequency in East Asia, possibly due to its role in protecting against severe malnutrition.
  • * A novel mouse model showed that calorie restriction leads to changes in gene expression linked to GHRd3, impacting weight and sex characteristics, hinting that its allele frequency has evolved in response to resource availability throughout human history.
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Aim: Children with special health care needs (CSHCN) are those who require more care for their physical, developmental, or emotional differences than their typically developing peers. Among a wide range of burdens that caregivers of CSHCN experience, the mental burden of caregivers is still not well investigated. This study aimed at examining the relationship between caring for CSHCN and mothers' anxiety/depression.

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Heterohelicenes are potential materials in molecular electronics and optics because of their inherent chirality and various electronic properties originating from the introduced heteroatoms. In this work, we comprehensively investigated two kinds of double NO-hetero[5]helicenes composed of 12-benzo[]phenoxazine () and 13-dibenzo[,]phenoxazine (). These helicenes exhibit good electron-donor properties reflecting the electron-rich character of their monomers and were demonstrated to work as p-type semiconductors.

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Globin-X (GbX) is an enigmatic member of the vertebrate globin gene family with a wide phyletic distribution that spans protostomes and deuterostomes. Unlike canonical globins such as hemoglobins and myoglobins, functional data suggest that GbX does not have a primary respiratory function. Instead, evidence suggests that the monomeric, membrane-bound GbX may play a role in cellular signaling or protection against the oxidation of membrane lipids.

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The recent development of ecological studies has been fueled by the introduction of massive information based on chromosome-scale genome sequences, even for species for which genetic linkage is not accessible. This was enabled mainly by the application of Hi-C, a method for genome-wide chromosome conformation capture that was originally developed for investigating the long-range interaction of chromatins. Performing genomic scaffolding using Hi-C data is highly resource-demanding and employs elaborate laboratory steps for sample preparation.

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Corrigendum to "Shark and ray genomics for disentangling their morphological diversity and vertebrate evolution" [Developmental Biology 477 (2021) 262-272].

Dev Biol

December 2021

Molecular Life History Laboratory, Department of Genomics and Evolutionary Biology, National Institute of Genetics, Japan; Department of Genetics, Sokendai (Graduate University for Advanced Studies), Japan; Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research, Japan. Electronic address:

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The loopy world of cohesin.

Elife

July 2021

Genome Dynamics Laboratory, National Institute of Genetics, Mishima, Japan.

DNA loops can be formed by a mechanism in which the cohesin complex pulls DNA strands through its ring structure using biased Brownian motion.

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Liquid-like chromatin in the cell: What can we learn from imaging and computational modeling?

Curr Opin Struct Biol

December 2021

Maxwell Centre, Cavendish Laboratory, Department of Physics, University of Cambridge, J J Thomson Avenue, Cambridge CB3 0HE, UK; Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, UK; Department of Genetics, University of Cambridge, Cambridge, CB2 3EH, UK. Electronic address:

Chromatin in eukaryotic cells is a negatively charged long polymer consisting of DNA, histones, and various associated proteins. With its highly charged and heterogeneous nature, chromatin structure varies greatly depending on various factors (e.g.

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The cortical subplate is critical in regulating the entry of thalamocortical sensory afferents into the cortex. These afferents reach the subplate at embryonic day (E)15.5 in the mouse, but "wait" for several days, entering the cortical plate postnatally.

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Shark and ray genomics for disentangling their morphological diversity and vertebrate evolution.

Dev Biol

September 2021

Molecular Life History Laboratory, Department of Genomics and Evolutionary Biology, National Institute of Genetics, Japan; Department of Genetics, Sokendai (Graduate University for Advanced Studies), Japan; Laboratory for Phyloinformatics, RIKEN Center for Biosystems Dynamics Research, Japan. Electronic address:

Developmental studies of sharks and rays (elasmobranchs) have provided much insight into the process of morphological evolution of vertebrates. Although those studies are supposedly fueled by large-scale molecular sequencing information, whole-genome sequences of sharks and rays were made available only recently. One compelling difficulty of elasmobranch developmental biology is the low accessibility to embryonic study materials and their slow development.

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Article Synopsis
  • * The type of genome structure present in an organism is linked to the presence of condensin II, a protein complex involved in chromosome organization.
  • * Depleting condensin II in humans leads to a genome architecture similar to simpler organisms, suggesting a conserved mechanism from our common ancestor that impacts how genomes are structured during cell division.
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Physical Nature of Chromatin in the Nucleus.

Cold Spring Harb Perspect Biol

May 2021

Genome Dynamics Laboratory, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.

Genomic information is encoded on long strands of DNA, which are folded into chromatin and stored in a tiny nucleus. Nuclear chromatin is a negatively charged polymer composed of DNA, histones, and various nonhistone proteins. Because of its highly charged nature, chromatin structure varies greatly depending on the surrounding environment (e.

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The taxonomic status of extinct Japanese or Honshu wolves () has been disputed since the name was first proposed by Temminck in 1839 on the basis of specimens stored in Leiden, the Netherlands. Points of controversy include whether the type specimen of (Jentink c: RMNH.MAM.

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Electrochemical Oxidation Enables Regioselective and Scalable α-C(sp)-H Acyloxylation of Sulfides.

J Am Chem Soc

March 2021

College of Chemistry and Molecular Sciences, the Institute for Advanced Studies (IAS), Wuhan University, Wuhan 430072, People's Republic of China.

A highly selective, environmentally friendly, and scalable electrochemical protocol for the construction of α-acyloxy sulfides, through the synergistic effect of self-assembly-induced C(sp)-H/O-H cross-coupling, is reported. It features exceptionally broad substrate scope, high regioselectivity, gram-scale synthesis, construction of complex molecules, and applicability to a variety of nucleophiles. Moreover, the soft X-ray absorption technique and a series of control experiments have been utilized to demonstrate the pivotal role of the self-assembly of the substrates, which indeed is responsible for the excellent compatibility and precise control of high regioselectivity in our electrochemical protocol.

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Tight junctions (TJs) are composed of a claudin-based anastomosing network of TJ strands at which plasma membranes of adjacent epithelial cells are closely attached to regulate the paracellular permeability. Although the TJ proteins occludin and tricellulin have been known to be incorporated in the TJ strand network, their molecular functions remain unknown. Here, we established tricellulin/occludin-double knockout (dKO) MDCK II cells using a genome editing technique and evaluated the structure and barrier function of these cells.

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Article Synopsis
  • l-DOPA is a main treatment for Parkinson's disease but can lead to a complication known as l-DOPA-induced dyskinesia (LID) over time.
  • Researchers created a mouse model to study LID by administering l-DOPA and recording neuron activity in key brain regions while observing different states of dyskinesia.
  • Findings revealed altered neuronal firing patterns in the globus pallidus and substantia nigra during dyskinesia states, indicating that certain pathways that promote movement are enhanced while those that inhibit it are suppressed, contributing to the development of LID.
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