181 results match your criteria: "Sokendai (Graduate University for Advanced Studies)[Affiliation]"

The mitotic spindle consists of aligned filaments of dynamic microtubules that faithfully segregate mitotic chromosomes. This view of the mitotic spindle was initially established by detecting weak birefringence of the aligned filaments, which was realized by developing polarized light microscopy (Inoué S, Chromosoma 5:487-500. https://doi.

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Organelles in cells are appropriately positioned, despite crowding in the cytoplasm. However, our understanding of the force required to move large organelles, such as the nucleus, inside the cytoplasm is limited, in part owing to a lack of accurate methods for measurement. We devised a method to apply forces to the nucleus of living embryos to measure the force generated inside the cell.

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  • * This project analyzed the Japanese Red List, which catalogs extinct and threatened species, and found that only 2.1% of these species have available whole genome sequence data, mainly favoring mammals, birds, and vascular plants.
  • * The study highlights gaps in genome sequencing efforts and suggests that future policies should focus on the taxa with less available genomic data, with data available online for continuous updates.
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Comparative genomics illuminates karyotype and sex chromosome evolution of sharks.

Cell Genom

August 2024

Integrative Science Center of Germplasm Creation in Western China (Chongqing) Science City, MOE Key Laboratory of Freshwater Fish Reproduction and Development, School of Life Sciences, Southwest University, Chongqing 400715, China. Electronic address:

Chondrichthyes is an important lineage to reconstruct the evolutionary history of vertebrates. Here, we analyzed genome synteny for six chondrichthyan chromosome-level genomes. Our comparative analysis reveals a slow evolutionary rate of chromosomal changes, with infrequent but independent fusions observed in sharks, skates, and chimaeras.

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  • Serpentinization is a geochemical process that creates environments on Earth where certain microbes can produce methane and acetogen; this study specifically explores a location in California called The Cedars.
  • Researchers sequenced the genome of a Methanocellales archaeon, named Met12, which interestingly does not contain key genes for methane production but has genes related to acetogenesis.
  • The study findings indicate that Met12 functions as an electron-fueled acetogen rather than a methanogen, highlighting its potential role in carbon reduction without electron bifurcation.
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Background And Hypothesis: Problematic internet use (PIU) is prevalent among adolescents. Past research suggested cross-sectional associations between PIU and psychotic experiences, but little information is available on the longitudinal association. We hypothesized that PIU in adolescence may be longitudinally associated with psychotic experiences, adjusting for confounders.

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[Dynamic activity model of movement disorders: a unified view to understand their pathophysiology].

Rinsho Shinkeigaku

June 2024

HM CINAC (Centro Integral de Neurociencias Abarca Campal), Hospital Universitario HM Puerta del Sur, HM Hospitales.

Malfunction of the basal ganglia leads to movement disorders such as Parkinson's disease, dystonia, Huntington's disease, dyskinesia, and hemiballism, but their underlying pathophysiology is still subject to debate. To understand their pathophysiology in a unified manner, we propose the "dynamic activity model", on the basis of alterations of cortically induced responses in individual nuclei of the basal ganglia. In the normal state, electric stimulation in the motor cortex, mimicking cortical activity during initiation of voluntary movements, evokes a triphasic response consisting of early excitation, inhibition, and late excitation in the output stations of the basal ganglia of monkeys, rodents, and humans.

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Enigmatic Nodal and Lefty gene repertoire discrepancy: Latent evolutionary history revealed by vertebrate-wide phylogeny.

Dev Dyn

April 2024

Molecular Life History Laboratory, Department of Genomics and Evolutionary Biology, National Institute of Genetics, Shizuoka, Japan.

Homology in vertebrate body plans is traditionally ascribed to the high-level conservation of regulatory components within the genetic programs governing them, particularly during the "phylotypic stage." However, advancements in embryology and molecular phylogeny have unveiled the dynamic nature of gene repertoires responsible for early development. Notably, the Nodal and Lefty genes, members of the transforming growth factor-beta superfamily producing intercellular signaling molecules and crucial for left-right (L-R) symmetry breaking, exhibit distinctive features within their gene repertoires.

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Evolutionary origins of bitter taste receptors in jawed vertebrates.

Curr Biol

April 2024

Department of Agricultural Chemistry, School of Agriculture, Meiji University, Kawasaki, Kanagawa 214-8571, Japan. Electronic address:

Taste is a sense that detects information about nutrients and toxins in foods. Of the five basic taste qualities, bitterness is associated with the detection of potentially harmful substances like plant alkaloids. In bony vertebrates, type 2 taste receptors (T2Rs), which are G-protein-coupled receptors (GPCRs), act as bitter taste receptors.

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  • - Increased lactate levels from glycolysis are being studied as potential markers for metabolic changes in neurons, linked to a drop in brain pH, which has been associated with various neuropsychiatric disorders like schizophrenia and autism.
  • - Research shows that these pH and lactate changes are common across different animal models, including those for depression, epilepsy, and Alzheimer's disease, though findings vary, particularly within the autism spectrum.
  • - A large-scale analysis indicated that higher lactate levels correlate with worse working memory performance, suggesting that altered brain chemistry might reflect underlying conditions across multiple disorders.
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Recent studies have consistently demonstrated that the regulation of chromatin and gene transcription plays a pivotal role in the pathogenesis of neurodevelopmental disorders. Among many genes involved in these pathways, KMT2C, encoding one of the six known histone H3 lysine 4 (H3K4) methyltransferases in humans and rodents, was identified as a gene whose heterozygous loss-of-function variants are causally associated with autism spectrum disorder (ASD) and the Kleefstra syndrome phenotypic spectrum. However, little is known about how KMT2C haploinsufficiency causes neurodevelopmental deficits and how these conditions can be treated.

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Pacific saury (Cololabis saira) is a commercially important small pelagic fish species in Asia. In this study, we conducted the first-ever whole genome sequencing of this species, with single molecule, real-time (SMRT) sequencing technology. The obtained high-fidelity (HiFi) long-read sequence data, which amount to ~30-folds of its haploid genome size that was measured with quantitative PCR (1.

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Podocytes serve as part of the renal filtration unit with slit diaphragms. Although the structure of slit diaphragms between two cells is well characterized, how the tricellular contact of podocytes is organized and how it changes in injured podocytes remains unknown. This study focused on a tricellular junction protein, angulin-3, and its localization in healthy podocytes, in developmental stages, and in pathologic conditions, using a newly established monoclonal antibody.

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Organelles in cells are appropriately positioned, despite crowding in the cytoplasm. However, our understanding of the force required to move large organelles, such as the nucleus, inside the cytoplasm is limited, in part owing to a lack of accurate methods for measurement. We devised a novel method to apply forces to the nucleus of living, wild-type embryos to measure the force generated inside the cell.

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A vertebrate-wide catalogue of T1R receptors reveals diversity in taste perception.

Nat Ecol Evol

January 2024

Department of Agricultural Chemistry, School of Agriculture, Meiji University, Kawasaki, Japan.

Taste is a vital chemical sense for feeding behaviour. In mammals, the umami and sweet taste receptors comprise three members of the taste receptor type 1 (T1R/TAS1R) family: T1R1, T1R2 and T1R3. Because their functional homologues exist in teleosts, only three TAS1R genes generated by gene duplication are believed to have been inherited from the common ancestor of bony vertebrates.

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Dynamic Activity Model of Movement Disorders: The Fundamental Role of the Hyperdirect Pathway.

Mov Disord

December 2023

HM CINAC (Centro Integral de Neurociencias Abarca Campal), Hospital Universitario HM Puerta del Sur, HM Hospitales, Madrid, Spain.

Schematic illustration of cortically induced dynamic activity changes of the output nuclei of the basal ganglia (the internal segment of the globus pallidus, GPi and the substantia nigra pars reticulata, SNr) in the healthy and diseased states. The height of the dam along the time course controls the expression of voluntary movements. Its alterations could cause a variety of movement disorders, such as Parkinson's disease and hyperkinetic disorders.

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Background: Understanding the etiology of psychosis is essential to the development of preventive interventions. The COVID-19 pandemic provides a rare natural experiment that can expand our understanding of the role of social factors in the trajectories and etiology of psychosis across adolescence, particularly in Tokyo where the prevalence of actual COVID-19 infection remained low. We hypothesized that the likelihood of self-reporting psychotic experiences (PEs) would increase following the onset of the COVID-19 pandemic.

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The intracellular positioning of the centrosome, a major microtubule-organizing center, is important for cellular functions. One of the features of centrosome positioning is the spacing between centrosomes; however, the underlying mechanisms are not fully understood. To characterize the spacing activity in embryos, a genetic setup was developed to produce enucleated embryos.

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Article Synopsis
  • Little research exists on how being gender nonconforming in adolescence affects mental health later on, with potential social factors contributing to distress rather than individual traits.
  • Data from the Tokyo Teen Cohort study was analyzed, focusing on adolescents born between 2002 and 2004, to assess how gender nonconformity at ages 12 and 14 relates to mental health at age 16, considering various confounding factors.
  • The findings indicated that those who exhibited consistent gender nonconforming behavior faced higher risks of depression and psychotic experiences at age 16, with around 30% of the connection to depression explained by factors like loneliness and bullying, stressing the importance of addressing these issues through social interventions.
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  • The study investigates the relationship between help-seeking intentions and depressive symptoms in adolescents over time, using longitudinal data from the Tokyo Teen Cohort involving 3,171 participants.
  • Results show that greater depressive symptoms tend to lead to lower help-seeking intentions, while some evidence suggests lower help-seeking can also increase depressive symptoms, although the latter was less consistent.
  • The findings highlight the importance of early intervention and support from parents and teachers to help adolescents manage depression and encourage help-seeking behaviors.
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Genomic studies of vertebrate chromosome evolution have long been hindered by the scarcity of chromosome-scale DNA sequences of some key taxa. One of those limiting taxa has been the elasmobranchs (sharks and rays), which harbor species often with numerous chromosomes and enlarged genomes. Here, we report the chromosome-scale genome assembly for the zebra shark , an endangered species that has a relatively small genome among sharks (3.

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The impact of local genomic properties on the evolutionary fate of genes.

Elife

May 2023

Molecular Life History Laboratory, Department of Genomics and Evolutionary Biology, National Institute of Genetics, Mishima, Japan.

Article Synopsis
  • Functionally important genes tend to be retained through evolution, while others may be lost due to various factors, including their genomic environment.
  • Researchers conducted a detailed analysis of vertebrate gene evolution, identifying 813 "elusive genes" in humans that were lost in several mammalian lineages.
  • These elusive genes were found in genomic regions characterized by rapid DNA changes, high GC content, and dense gene clusters, indicating that the traits influencing gene loss have been around since the early evolution of vertebrates about 500 million years ago.
  • The study highlights how the genomic features surrounding a gene can influence its evolutionary fate, sometimes leading to a decrease in its functional necessity.
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POLR1A variants underlie phenotypic heterogeneity in craniofacial, neural, and cardiac anomalies.

Am J Hum Genet

May 2023

Division of Human Genetics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA. Electronic address:

Heterozygous pathogenic variants in POLR1A, which encodes the largest subunit of RNA Polymerase I, were previously identified as the cause of acrofacial dysostosis, Cincinnati-type. The predominant phenotypes observed in the cohort of 3 individuals were craniofacial anomalies reminiscent of Treacher Collins syndrome. We subsequently identified 17 additional individuals with 12 unique heterozygous variants in POLR1A and observed numerous additional phenotypes including neurodevelopmental abnormalities and structural cardiac defects, in combination with highly prevalent craniofacial anomalies and variable limb defects.

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An Arabidopsis mutant displaying impaired stomatal responses to CO , cdi4, was isolated by a leaf thermal imaging screening. The mutated gene PECT1 encodes CTP:phosphorylethanolamine cytidylyltransferase. The cdi4 exhibited a decrease in phosphatidylethanolamine levels and a defect in light-induced stomatal opening as well as low-CO -induced stomatal opening.

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