Incomplete recovery of tree community composition and rare species after 120 years of tropical forest succession in Panama.

Determining how fully tropical forests regenerating on abandoned land recover characteristics of old-growth forests is increasingly important for understanding their role in conserving rare species and maintaining ecosystem services. Despite this, our understanding of forest structure and community composition recovery throughout succession is incomplete, as many tropical chronosequences do not extend beyond the first 50 years of succession. Here, we examined trajectories of forest recovery across eight 1-hectare plots in middle and later stages of forest succession (40-120 years) and five 1-hectare old-growth plots, in the Barro Colorado Nature Monument (BCNM), Panama.

A global systematic review of frugivorous animal tracking studies and the estimation of seed dispersal distances.

Seed dispersal is one of the most important ecosystem functions globally. It shapes plant populations, enhances forest succession, and has multiple, indirect benefits for humans, yet it is one of the most threatened processes in plant regeneration, worldwide. Seed dispersal distances are determined by the diets, seed retention times and movements of frugivorous animals.

Two new species of from Caribbean deep reefs, with comments on the related genus (Teleostei, Gobiidae, Gobiosomatini, Nes subgroup).

Tropical deep reefs (~40-300 m) are diverse ecosystems that serve as habitats for diverse communities of reef-associated fishes. Deep-reef fish communities are taxonomically and ecologically distinct from those on shallow reefs, but like those on shallow reefs, they are home to a species-rich assemblage of small, cryptobenthic reef fishes, including many species from the family Gobiidae (gobies). Here we describe two new species of deep-reef gobies, and , that were collected using the submersible from rariphotic reefs off the island of Roatan (Honduras) in the Caribbean.

Long-term fire and vegetation change in northwestern Amazonia.

Amazonian forest plots are used to quantify biodiversity and carbon sequestration, and provide the foundation for much of what is known about tropical ecology. Many plots are assumed to be undisturbed, but recent work suggests that past fire, forest openings, and cultivation created vegetation changes that have persisted for decades to centuries (ecological legacies). The Yasuní Forest Dynamics plot is one of the most biodiverse places on earth, yet its human history remains unknown.

Rethinking the nature of intraspecific variability and its consequences on species coexistence.

Intraspecific variability (IV) has been proposed to explain species coexistence in diverse communities. Assuming, sometimes implicitly, that conspecific individuals can perform differently in the same environment and that IV increases niche overlap, previous studies have found contrasting results regarding the effect of IV on species coexistence. We aim at showing that the large IV observed in data does not mean that conspecific individuals are necessarily different in their response to the environment and that the role of high-dimensional environmental variation in determining IV has largely remained unexplored in forest plant communities.

Erratum: Addendum and Corrigendum: Robertson DR, Estapé CJ, Estapé AM, Richter L, Peña E, Victor B (2022) An updated, illustrated inventory of the marine fishes of the US Virgin Islands. Zookeys 1103: 79-122. doi: 10.3897/zookeys.1103.83795.

[This corrects the article DOI: 10.3897/zookeys.1103.

An updated, illustrated inventory of the marine fishes of the US Virgin Islands.

The US Virgin Islands (USVI) include St. John and St. Thomas on the Puerto Rican Platform (PRP) and St.

Environmental DNA (eDNA) reveals potential for interoceanic fish invasions across the Panama Canal.

Interoceanic canals can facilitate biological invasions as they connect the world's oceans and remove dispersal barriers between bioregions. As a consequence, multiple opportunities for biotic exchange arise and the resulting establishment of migrant species often causes adverse ecological and economic impacts. The Panama Canal is a key region for biotic exchange as it connects the Pacific and Atlantic Oceans in Central America.

Corrigenda: A new species of damselfish from the tropical western Atlantic (Teleostei, Pomacentridae). ZooKeys 1008: 107-138. https://zookeys.pensoft.net/article/58805/.

[This corrects the article DOI: 10.3897/zookeys.1008.

Agent-based modeling of the effects of forest dynamics, selective logging, and fragment size on epiphyte communities.

Forest canopies play a crucial role in structuring communities of vascular epiphytes by providing substrate for colonization, by locally varying microclimate, and by causing epiphyte mortality due to branch or tree fall. However, as field studies in the three-dimensional habitat of epiphytes are generally challenging, our understanding of how forest structure and dynamics influence the structure and dynamics of epiphyte communities is scarce.Mechanistic models can improve our understanding of epiphyte community dynamics.

A new species of damselfish from the tropical western Atlantic (Teleostei, Pomacentridae).

Initially described in 1882, , the Yellowtail Reeffish, was redescribed in 1982 to account for an observed color morph that possesses a white tail instead of a yellow one, but morphological and geographic boundaries between the two color morphs were not well understood. Taking advantage of newly collected material from submersible studies of deep reefs and photographs from rebreather dives, this study sought to determine whether the white-tailed is actually a color morph of or a distinct species. Phylogenetic analyses of mitochondrial genes cytochrome b and cytochrome c oxidase subunit I separated and the white-tailed into two reciprocally monophyletic clades.

The marine fishes of St Eustatius Island, northeastern Caribbean: an annotated, photographic catalog.

Sint Eustatius (Statia) is a 21 km island situated in the northeastern Caribbean Sea. The most recent published sources of information on that island's marine fish fauna is in two non-governmental organization reports from 2015-17 related to the formation of a marine reserve. The species-list in the 2017 report was based on field research in 2013-15 using SCUBA diving surveys, shallow "baited underwater video surveys" (BRUVs), and data from fishery surveys and scientific collections over the preceding century.

Aggressive mimicry in a coral reef fish: The prey's view.

Since all forms of mimicry are based on perceptual deception, the sensory ecology of the intended receiver is of paramount importance to test the necessary precondition for mimicry to occur, that is, model-mimic misidentification, and to gain insight in the origin and evolutionary trajectory of the signals. Here we test the potential for aggressive mimicry by a group of coral reef fishes, the color polymorphic hamlets, from the point of view of their most common prey, small epibenthic gobies and mysid shrimp. We build visual models based on the visual pigments and spatial resolution of the prey, the underwater light spectrum and color reflectances of putative models and their hamlet mimics.

Jumping the green wall: The use of PNA-DNA clamps to enhance microbiome sampling depth in wildlife microbiome research.

As microbiome research moves away from model organisms to wildlife, new challenges for microbiome high-throughput sequencing arise caused by the variety of wildlife diets. High levels of contamination are commonly observed emanating from the host (mitochondria) or diet (chloroplast). Such high contamination levels affect the overall sequencing depth of wildlife samples thus decreasing statistical power and leading to poor performance in downstream analysis.

Documenting decapod biodiversity in the Caribbean from DNA barcodes generated during field training in taxonomy.

DNA barcoding is a useful tool to identify the components of mixed or bulk samples, as well as to determine individuals that lack morphologically diagnostic features. However, the reference database of DNA barcode sequences is particularly sparsely populated for marine invertebrates and for tropical taxa. We used samples collected as part of two field courses, focused on graduate training in taxonomy and systematics, to generate DNA sequences of the barcode fragments of subunit I (COI) and mitochondrial ribosomal 16S genes for 447 individuals, representing at least 129 morphospecies of decapod crustaceans.

Predominant east to west colonizations across major oceanic barriers: Insights into the phylogeographic history of the hydroid superfamily Plumularioidea, suggested by a mitochondrial DNA barcoding marker.

We provide preliminary insights into the global phylogeographic and evolutionary patterns across species of the hydrozoan superfamily Plumularioidea (Cnidaria: Hydrozoa). We analyzed 1,114 16S sequences of 198 putative species of Plumularioidea collected worldwide. We investigated genetic connections and divergence in relation to present-day and ancient biogeographic barriers, climate changes and oceanic circulation.

An update to the inventory of shore-fishes from the Parque Nacional Sistema Arrecifal Veracruzano, Veracruz, México.

Data on marine and brackish-water fishes recorded in the area of the Parque Nacional Sistema Arrecifal Veracruzano in the southwest Gulf of Mexico were extracted from online aggregators of georeferenced location records, the recent ichthyological literature reviewed, and collections and observations made to provide a more complete faunal inventory for that park. Those actions added 95 species to a comprehensive inventory published in 2013, and brought the total to 472 species, an increase of 22%. Seventy-four percent of the additions came from online aggregators of georeferenced species records, which clearly demonstrates the value of reviewing and incorporating such data into species inventories.

Reef-associated fishes from the offshore reefs of western Campeche Bank, Mexico, with a discussion of mangroves and seagrass beds as nursery habitats.

A series of small emergent coral reefs and shallow, submerged coralliferous banks are scattered along the western edge of Campeche Bank (southwest Gulf of Mexico), 150-200 km offshore from the Yucatán Peninsula, Mexico. Here a reasonably comprehensive, annotated checklist of reef-associated fishes for one reef, Cayo Arcas (expanded from 162 to 209 species) is presented, with preliminary checklists of such fishes from three other emergent reefs (Cayo Arenas, Triángulo Oeste, Triángulo Este) and four submerged bank reefs (Banco Obispo Norte, Banco Obispo Sur, Banco Nuevo and Banco Pera). During 2017-18 a total of 260 species was observed or collected from those reefs, and previous studies and georeferenced museum records in the global aggregator Fishnet2 added another 101 shallow-living species recorded on or adjacent to those reefs.

Implications of shared predation for space use in two sympatric leporids.

Spatial variation in habitat riskiness has a major influence on the predator-prey space race. However, the outcome of this race can be modulated if prey shares enemies with fellow prey (i.e.

Reference DNA barcodes and other mitochondrial markers for identifying Caribbean Octocorals.

DNA barcoding is a useful tool for documenting the diversity of metazoans. The most commonly used barcode markers, 16S and COI, are not considered suitable for species identification within some "basal" phyla of metazoans. Nevertheless metabarcoding studies of bulk mixed samples commonly use these markers and may obtain sequences for "basal" phyla.

A new species of from deep reefs of Roatan, Honduras (Teleostei, Grammatidae).

A new species of is described from submersible collections at 122-165 m depth off the coast of Roatan, Honduras, in the western Caribbean. The new species is distinguished from all other species in the genus by its bright blue coloration on the head, nape, and dorsal portion of the trunk beneath the spinous dorsal fin, a prominent round black blotch below the origin of the spinous dorsal fin, and a high number of gill rakers. A molecular phylogeny based on mitochondrial and nuclear genes shows that the new species belongs to a clade containing , , and .

A new species of frog-biting midge from Papua New Guinea with a key to the described Corethrellidae of the Australopapuan region (Diptera, Corethrellidae, ).

Kvifte & Bernal, is described based on one male and six female specimens collected at 2200 m a.s.l.

Laboulbeniales hyperparasites (Fungi, Ascomycota) of bat flies: Independent origins and host associations.

The aim of this study was to explore the diversity of ectoparasitic fungi (Ascomycota, Laboulbeniales) that use bat flies (Diptera, Hippoboscoidea) as hosts. Bat flies themselves live as ectoparasites on the fur and wing membranes of bats (Mammalia, Chiroptera); hence this is a tripartite parasite system. Here, we collected bats, bat flies, and Laboulbeniales, and conducted phylogenetic analyses of Laboulbeniales to contrast morphology with ribosomal sequence data.

Molecular signatures of host specificity linked to habitat specialization in sea anemones.

Rising ocean temperatures associated with global climate change induce breakdown of the symbiosis between coelenterates and photosynthetic microalgae of the genus . Association with more thermotolerant partners could contribute to resilience, but the genetic mechanisms controlling specificity of hosts for particular types are poorly known. Here, we characterize wild populations of a sea anemone laboratory model system for anthozoan symbiosis, from contrasting environments in Caribbean Panama.

Highly contrasted population genetic structures in a host-parasite pair in the Caribbean Sea.

Evolution and population genetic structure of marine species across the Caribbean Sea are shaped by two complex factors: the geological history and the present pattern of marine currents. Characterizing and comparing the genetic structures of codistributed species, such as host-parasite associations, allow discriminating the relative importance of environmental factors and life history traits that influenced gene flow and demographic events. Using microsatellite and Cytochrome Oxidase I markers, we investigated if a host-parasite pair (the heart urchin and its parasitic pea crab ) exhibits comparable population genetic structures in the Caribbean Sea and how the observed patterns match connectivity regions from predictive models and other taxa.