Chromosome-level genome assembly and annotation of the tropical sea cucumber Stichopus monotuberculatus.

In this study, a chromosome-level genome of the tropical sea cucumber Stichopus monotuberculatus was generated by a combination of Nanopore long-read, Illumina short-read, and Hi-C sequencing technologies. The final assembly was 810.54 Mb in length, with contig N50 and scaffold N50 values of 10.

Micro- and mesoplastic pollution in the surface water and nekton from the eastern Indian ocean: Spatiotemporal variation, correlation and risk assessment.

The pollution of micro- and mesoplastic (MMP) in the Eastern Indian Ocean (EIO) remains poorly understood. The present study revealed that MMP abundance in nekton from EIO in 2022 (mean: 2.30 ± 0.

Multi-Omics Inform Invasion Risks Under Global Climate Change.

Global climate change is exacerbating biological invasions; however, the roles of genomic and epigenomic variations and their interactions in future climate adaptation remain underexplored. Using the model invasive ascidian Botryllus schlosseri across the Northern Hemisphere, we investigated genomic and epigenomic responses to future climates and developed a framework to assess future invasion risks. We employed generalized dissimilarity modeling and gradient forest analyses to assess genomic and epigenomic offsets under climate change.

The antibacterial defence role of β-defensin in the seahorse testis.

Seahorses represent the only known group of animals with male pregnancy. Seahorses have small testis that produce a limited quantity of sperm. To date, the response of this immune-privileged organ to pathogenic infections has not been reported.

Food web bioaccumulation model for ecological risk assessment of emerging organic pollutants in marine ecosystems: Principles, advances and challenges.

The bioaccumulation and trophic transfer of pollutants in marine ecosystem members determine their ultimate ecological risks. Food web bioaccumulation models are widely used in scientific and regulatory programs to assess the bioaccumulation and ecological risks of pollutants at the ecosystem scale. The food web models are mainly established through concentration- and fugacity-based modeling approaches and include some chemical, food web-related, physiological and environmental factors.

Unveiling the Indian Ocean forcing on winter eastern warming - western cooling pattern over North America.

While the tropical Pacific teleconnection to North America has been studied extensively, the impact of the Indian Ocean on North American climate has received less attention. Here, through observational analysis and hierarchy atmospheric model simulations with different complexity, we find that the Indian Ocean plays a crucial role in North American winter climate through a teleconnection termed the Indian Ocean - North America pattern. We show that in the warm Indian Ocean phase, this teleconnection contributes to anomalously cold winters along the west coast of the United States through advection with increased mountain snowfall, while simultaneously leading to warmer conditions over the Great Lakes region.

Talaketides A-G, linear polyketides with prostate cancer cytotoxic activity from the mangrove sediment-derived fungus Talaromyces sp. SCSIO 41027.

Seven novel linear polyketides, talaketides A-G (1-7), were isolated from the rice media cultures of the mangrove sediment-derived fungus Talaromyces sp. SCSIO 41027. Among these, talaketides A-E (1-5) represented unprecedented unsaturated linear polyketides with an epoxy ring structure.

Molluscan systematics: historical perspectives and the way ahead.

Mollusca, the second-most diverse animal phylum, is estimated to have over 100,000 living species with great genetic and phenotypic diversity, a rich fossil record, and a considerable evolutionary significance. Early work on molluscan systematics was grounded in morphological and anatomical studies. With the transition from oligo gene Sanger sequencing to cutting-edge genomic sequencing technologies, molecular data has been increasingly utilised, providing abundant information for reconstructing the molluscan phylogenetic tree.

Loss of Coral Trait Diversity and Impacts on Reef Fish Assemblages on Recovering Reefs.

Understanding patterns of biodiversity change is essential as coral reefs experience recurrent cycles of disturbance and recovery. Shifts in the total cover and species composition of habitat-forming corals can have far-reaching consequences, including shifts in coral functional traits and impacts on local fish assemblages. We surveyed coral and fish assemblages along the southern coast of Hainan Island near Sanya, China, in 2006, 2010, and 2018, during a period with repeated mass bleaching events.

Control of slab tears and slab flat wedging on volcanism in the Alaska subduction zone.

Multistage plate subduction plays a crucial role in magmatism; however, the mechanisms by which deep geodynamic processes govern volcanism in the Alaska subduction zone remain controversial. Using numerous travel-time data from several seismic arrays, we constructed high-resolution tomographic models to investigate the velocity structure of the Pacific Plate and Yakutat slab. Our tomographic results revealed high-velocity anomalies in the Pacific Plate and Yakutat slab, while the low-velocity areas within the Pacific Plate were identified as slab tears.

A novel method to estimate the 3D chlorophyll a distribution in the South China Sea surface waters using hydrometeorological parameters.

Chlorophyll a (Chl-a) is a key indicator of marine ecosystems, and certain hydro-meteorological parameters (HMPs) are highly correlated with its fluctuations. Here, relevant and accessible HMPs were used as inputs, combined with machine learning (ML) algorithms for estimating 3D Chl-a in the South China Sea (SCS). With the inputs of temperature, salinity, depth, wind speed, wind direction, sea surface pressure, and relative humidity, the LightGBM-based model performed well, achieving high R values of 0.

Sinulariapeptide F, a new peptide from culture broth of marine-derived fungus Simplicillium sp. SCSIO 41222.

One new compound named sinulariapeptide F (1) together with one known butyrolactone (2) and seven known peptides (3-9) were isolated from the fungus Simplicillium sp. SCSIO 41222. Their structures and absolute configurations were established using HRESIMS, NMR spectroscopy (H, C, HSQC, HMBC) and marfey's method.

Production, characterization and environmental remediation application of emerging phosphorus-rich biochar/hydrochar: a comprehensive review.

Owing to the high carbon and phosphorus contents, large specific surface area and slow P release capacity of P-rich biochar/hydrochar (CHAR), its application in aquatic (or soil) environments and positive effects on heavy metal (HM) adsorption (or immobilization) have drawn global attention. To provide an overall picture of P-rich CHAR, this review includes a systematic analysis of the current knowledge on the preparation methods, characterization techniques, influencing factors and environmental applications of P-rich CHAR reported in the last ten years. The key findings and recommendations from this review are as follows: (1) there is still a knowledge gap concerning the regulatory mechanism of the key active components of P-rich CHAR at the molecular level.

LC-MS guided discovery of a new type of abyssomicin, glycoabyssomicin A, from a deep-sea derived .

Glycoabyssomicin A (), a new type of abyssomicin containing a sugar unit, was isolated from the deep-sea derived SCSIO 5802 guided by LC-MS. The structure of was elucidated by HR-ESI-MS, 1D-NMR (H,C NMR), 2D-NMR (HSQC, COSY, HMBC, NOESY), and TFA hydrolysis and acetylation reactions. In the antibacterial activities evaluation against a series of gram-positive and gram-negative bacteria, it showed inactive at the concentration of 10 μg per filter paper disc.

A reverse transcriptase controls prophage genome reduction to promote phage dissemination in Pseudomonas aeruginosa biofilms.

Filamentous bacteriophages play a critical role in biofilm formation and virulence in the opportunistic pathogen Pseudomonas aeruginosa. Here, studies of the filamentous Pf4 prophage life cycle within P. aeruginosa biofilms revealed that the prophage-encoded reverse transcriptase (RT) regulates phage genome dynamics.

Common occurrences of subsurface heatwaves and cold spells in ocean eddies.

Extreme ocean temperature events are becoming increasingly common due to global warming, causing catastrophic ecological and socioeconomic impacts. Despite extensive research on surface marine heatwaves (MHWs) and marine cold spells (MCSs) based on satellite observations, our knowledge of these extreme events and their drivers in the subsurface ocean-home to the majority of marine organisms-is very limited. Here we present global observational evidence for the important role of mesoscale eddies in the occurrence and intensification of subsurface MHWs and MCSs.

Comparative investigations on the metabolomic responses to cadmium in clams Ruditapes philippinarum from the Bohai Sea and South China Sea.

Cadmium (Cd) is a typical heavy metal contaminant along China coasts. Clams Ruditapes philippinarum are widely distributed in multiple climatic zones. However, few research has been conducted on the different responses to Cd in clams from different climatic zones.