641 results match your criteria: "School of Exact and Natural Sciences[Affiliation]"

PGRMC1 and PAQR4 are promising molecular targets for a rare subtype of ovarian cancer.

Open Life Sci

October 2024

Laboratory of Physiology and Toxicology of Reproduction, Institute of Zoology and Biomedical Research, Jagiellonian University, Gronostajowa 9, 30-387, Krakow, Poland.

The heterogeneity of ovarian cancer (OC) has made developing effective treatments difficult. Nowadays, hormone therapy plays a growing role in the treatment of OC; however, hormone modulators have had only limited success so far. To provide a more rigorous foundation for hormonal therapy for different OC subtypes, the current study used a series of bioinformatics approaches to analyse the expression profiles of genes encoding membrane progesterone (PGRMC1, progestins and the adipoQ receptor [PAQR] family), and androgen (zinc transporter member 9 [ZIP9], OXER1) receptors.

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Upregulation of ALOX12-12-HETE pathway impairs AMPK-dependent modulation of vascular metabolism in ApoE/LDLR mice.

Pharmacol Res

December 2024

Jagiellonian Centre for Experimental Therapeutics (JCET), Jagiellonian University, Bobrzynskiego 14, Krakow 30-348, Poland; Department of Pharmacology, Jagiellonian University Medical College, Grzegorzecka 16, Krakow 31-531, Poland.

Mitochondrial dysfunction and 12-lipoxygenase (ALOX12)-derived 12(S)-HETE production have been associated with vascular inflammation and the pathogenesis of atherosclerosis. However, the role of ALOX12 in regulating vascular energy metabolism in vascular inflammation has not been studied to date. Using mitochondrial and glycolysis functional profiling with the Seahorse extracellular flux analyzer, metabolipidomics, and proteomic analysis (LC-MS/MS), we characterized alterations in vascular energy metabolism in 2- and 6-month-old ApoE/LDLR vs.

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Aptamer-based assay for high-throughput substrate profiling of RNA decapping enzymes.

Nucleic Acids Res

November 2024

Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Pasteura 5, 02-093, Warsaw, Poland.

Recent years have led to the identification of a number of enzymes responsible for RNA decapping. This has provided a basis for further research to identify their role, dependency and substrate specificity. However, the multiplicity of these enzymes and the complexity of their functions require advanced tools to study them.

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A photoactive analogue of cisplatin was synthesized with two arylazopyrazole ligands, able to undergo -/- photoisomerizations. The photoisomer showed a dark half-life of 9 days. The cytotoxicities of both photoisomers of the complex were determined in several cancer and normal cell lines and compared to that of cisplatin.

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Some of the most commonly identified freshwater toxins are anatoxin-a (ATX-a), cylindrospermopsin (CYN), and microcystin-LR (MC-LR). The aim of this paper was to compare different methods of extracting and concentrating these cyanotoxins and check the impact of selected physical factors on the accumulation of biomass of Dolichospermum flos-aquae, Microcystis aeruginosa, and Raphidiopsis raciborskii. The effect of different cyanobacteria cultivation conditions on the amount of cyanotoxins synthesized showed no significant changes over time in the average concentration of all tested toxins in the medium compared to the control.

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MCPIP1 modulates the miRNA‒mRNA landscape in keratinocyte carcinomas.

J Exp Clin Cancer Res

October 2024

Faculty of Biochemistry, Biophysics and Biotechnology, Department of General Biochemistry, Jagiellonian University, Gronostajowa 7, Krakow, 30-387, Poland.

Article Synopsis
  • MCPIP1 is a protein that helps control inflammation and may prevent tumors; mice lacking this protein are more prone to developing skin tumors from certain chemical exposures.
  • The study used advanced sequencing techniques to explore how MCPIP1 regulates specific microRNAs and their effect on gene expression in skin tumors induced by chemicals.
  • Findings revealed significant changes in gene expression with 2400 different protein-coding genes and 33 microRNAs affected, highlighting the direct impact of MCPIP1 on microRNA levels and its role in promoting skin cancer cell growth.
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Background: DNA methylation profiling may provide a more accurate measure of the smoking status than self-report and may be useful in guiding clinical interventions and forensic investigations. In the current study, blood DNA methylation profiles of nearly 800 Polish individuals were assayed using Illuminia EPIC and the inference of smoking from epigenetic data was explored. In addition, we focused on the role of the AHRR gene as a top marker for smoking and investigated its responsiveness to other lifestyle behaviors.

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Article Synopsis
  • - The report introduces a new high performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS) method to measure a specific compound, HPPTCA, related to cysteine and vitamin B6, using 4-deoxypyridoxine as an internal standard.
  • - Sample preparation includes extracting HPPTCA from plasma proteins with acetonitrile, followed by ultrafiltration and dilution before analysis; the separation process takes 6 minutes at a controlled temperature with a precise gradient elution.
  • - The assay demonstrated linearity in measuring HPPTCA levels in plasma with a detection limit of 0.25 µmol/L, successfully confirming HPPTCA presence in samples from healthy donors with concentrations between
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Epilepsy is a pathophysiological condition displaying a highly diverse phenotype. Consequently, comprehending the mechanisms underlying seizures necessitates moving beyond a simplistic model focused on the imbalance between the classical excitatory and inhibitory neurotransmitter systems. Nitric oxide (NO), a nonclassical and multifunctional gaseous neurotransmitter, has the potential to exert a profound influence on epileptic reactivity.

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Pegylated gold nanoparticles interact with lipid bilayer and human serum albumin and transferrin.

Sci Rep

October 2024

Faculty of Biology and Environmental Protection, Department of General Biophysics, University of Lodz, Pomorska 141/143, Lodz, 90-236, Poland.

Gold nanoparticles (AuNPs) are potentially applicable in drug/nucleic acid delivery systems. Low toxicity, high stability, and bioavailability are crucial for the therapeutic use of AuNPs and they are mainly determined by their interactions with proteins and lipids on their route to the target cells. In this work, we investigated the interaction of two pegylated gold nanoparticles, AuNP14a and AuNP14b, with human serum proteins albumin (HSA) and transferrin (Tf) as well as dimyristoyl-phosphatidylcholine (DMPC) liposomes, which can be a representative of biomembranes.

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The loss of a single chromosome in a diploid organism halves the dosage of many genes and is usually accompanied by a substantial decrease in fitness. We asked whether this decrease simply reflects the joint damage caused by individual gene dosage deficiencies. We measured the fitness effects of single heterozygous gene deletions in yeast and combined them for each chromosome.

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Origin and Role of Testicular Macrophages in Testis Development, Steroidogenesis, and Spermatogenesis.

Results Probl Cell Differ

October 2024

Laboratory of Molecular Oncology and Innovative Therapies, Department of Oncology, Military Institute of Medicine, Warsaw, Poland.

Article Synopsis
  • * Two distinct macrophage populations exist in the testes of juveniles and adults, each with specific functions and locations: interstitial macrophages are connected to Leydig cells, while peritubular macrophages surround seminiferous tubules.
  • * The origins of testicular macrophages are debated, with some research indicating they come from the yolk sac and others suggesting they derive from monocytes in the bone marrow.
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The aim of this work was to investigate the effect of monoterpenoid hinokitiol (β-thujaplicin) on the monolayers and bilayers composed of lipids typical for bacteria membranes and gain insight into the potential role of the lipids in antibacterial activity and selectivity of this compound. To explore this issue, the in vitro studies were performed on different bacterial strains to verify antibacterial potency of hinokitiol. Then, the experiments on E.

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This study explores a non-kinase effect of extracellular regulated kinases 1/2 (ERK1/2) on the interaction between deoxyhypusine synthase (DHPS) and its substrate, eukaryotic translation initiation factor 5A (eIF5A). We report that Raf/MEK/ERK activation decreases the DHPS-ERK1/2 interaction while increasing DHPS-eIF5A association in cells. We determined the cryoelectron microscopy (cryo-EM) structure of the DHPS-ERK2 complex at 3.

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De-etiolation is Almost Color Blind: The Study of Photosynthesis Awakening under Blue and Red Light.

Plant Cell Physiol

December 2024

Department of Plant Physiology and Biochemistry, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Gronostajowa 7, Krakow 30-387, Poland.

The synthesis and assembly of functioning photosynthetic complexes in chloroplasts developing from etioplasts during the de-etiolation of angiosperm seedlings are imperative for the plant's autotrophic lifestyle. This study compared the de-etiolation process under monochromatic red or blue light of equal photon flux density during a 24-h illumination period of etiolated Arabidopsis seedlings. The aim was to elucidate the impact of these light wavelengths on the etioplast-to-chloroplast transformation and the initiation of light-dependent photosynthetic reactions.

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Article Synopsis
  • - Acute lymphoblastic leukaemia (ALL) is a complex pediatric cancer that requires precise diagnostics to ensure effective treatment, especially in distinguishing between B-cell ALL (B-ALL) and T-cell ALL (T-ALL).
  • - This study investigates the use of label-free Raman imaging with chemometrics as a rapid testing method for accurately identifying and classifying B-ALL and T-ALL at the single-cell level, showing significant improvements over traditional methods.
  • - Findings reveal that Raman spectroscopy detects unique molecular signatures in leukemic cells, allowing for reliable differentiation from normal lymphocytes, and highlights its potential for enhancing clinical diagnosis and personalized treatment strategies in pediatric oncology.
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Article Synopsis
  • FDA-approved anticoagulants can increase bleeding risks, including serious intracranial hemorrhages, but the specific effectiveness and safety of sulfonate polymers as alternatives have not been thoroughly studied.
  • Researchers synthesized and evaluated various sulfonated copolymers, finding that PSSS-based copolymers showed stronger anticoagulant effects compared to PAMPS-based ones, with the effectiveness influenced by sulfonate concentration and molecular weight.
  • The PEG-PSSS copolymer demonstrated significant anticoagulant activity in animal models and can be reversed by Heparin Binding Copolymer (HBC), targeting specific factors in the blood coagulation process, indicating potential for use in medical applications related to blood contact.
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An efficiency of delocalization in strongly conjugated systems remains an important factor crucial for modulation of the optical properties directly correlated with its range. An ortho-substituted phenylene derivative bearing electron donating/accepting functionality was built-in a fully unsaturated macrocyclic system with a global delocalization of a diatropic and/or a paratropic current. A precisely located structural modification influence observed behaviour in spectroscopic parameters that are only slightly recognizable in 4n+2 systems but showing a significant influence on the reduced derivatives with a contribution of 4n π-electrons delocalization path.

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Study Question: Can oocyte functionality be assessed by observing changes in their intracytoplasmic lipid droplets (LDs) profiles?

Summary Answer: Lipid profile changes can reliably be detected in human oocytes; lipid changes are linked with maternal age and impaired developmental competence in a mouse model.

What Is Known Already: In all cellular components, lipid damage is the earliest manifestation of oxidative stress (OS), which leads to a cascade of negative consequences for organelles and DNA. Lipid damage is marked by the accumulation of LDs.

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The cell walls of green algae Scenedesmus obliquus are complex, polymeric structures including an inner cellulose layer surrounded by an algaenan-containing trilaminar sheath. The process of autosporulation leads to the formation of sporangial (maternal) cell walls, which are released into the medium after sporangial autolysis. In this study, a fraction of maternal cell wall material (CWM) was isolated from the stationary phase cultures of Scenedesmus obliquus 633 and subjected to immunofluorescence microscopy using polyclonal anti-ubiquitin antibodies.

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Molecular basis of plastoquinone reduction in plant cytochrome bf.

Nat Plants

November 2024

Faculty of Biochemistry, Biophysics and Biotechnology, Department of Molecular Biophysics, Jagiellonian University, Kraków, Poland.

A multi-subunit enzyme, cytochrome bf (cytbf), provides the crucial link between photosystems I and II in the photosynthetic membranes of higher plants, transferring electrons between plastoquinone (PQ) and plastocyanin. The atomic structure of cytbf is known, but its detailed catalytic mechanism remains elusive. Here we present cryogenic electron microscopy structures of spinach cytbf at 1.

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Non-gonadal expression of piRNAs is widespread across Arthropoda.

FEBS Lett

January 2025

Laboratory of Bioinformatics and Genome Biology, Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Krakow, Poland.

Article Synopsis
  • PIWI-interacting RNAs (piRNAs) were found in the early 2000s and help protect the genetic material in reproductive cells.
  • Scientists used to think piRNAs were only in the reproductive organs, but they've discovered piRNAs in other body parts of many different animals, especially arthropods (like bugs and spiders).
  • A research study analyzed lots of genetic data and confirmed that piRNAs are found in many tissues across different arthropod species, not just in the gonads.
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Liquid-core nanocapsules (NCs) coated with amphiphilic hyaluronic acid (AmHA) have been proposed for the preparation of drug and food formulations. Herein, we focused on the use of ultrasound techniques to (i) optimize the polysaccharide chain length with respect to the properties of NCs stabilized with AmHAs and (ii) form oil-core nanocapsules with a coating composed of AmHAs. The results indicate that sonication is a convenient and effective method that allows for a controlled reduction in HA molecular weight.

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Article Synopsis
  • Symbiotic microorganisms are critical for insect biology, but there is limited understanding of their diversity compared to insects themselves; thus, methods like high-throughput barcoding could enhance our knowledge of these relationships during biodiversity declines.
  • The study tested the "HotSHOT" method, which uses alkaline buffers to extract DNA from insect specimens, and found that it significantly reduced microbial abundance estimates by an average of 15 times, but had a limited impact on the overall microbial community structure.
  • While the HotSHOT treatment affected low-abundance microbes, the presence of abundant bacteria with important ecological roles remained stable; the analysis confirmed differences in microbial diversity before and after treatment.
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