2,283 results match your criteria: "Sanford-Burnham-Prebys Medical Discovery Institute[Affiliation]"

iPSC-Derived Epithelial, Mesenchymal, Endothelial, and Immune Cell Co-Culture to Model Airway Barrier Integrity in Lung Health and Disease.

J Vis Exp

December 2024

Sanford Consortium for Regenerative Medicine; Sanford Burnham Prebys Medical Discovery Institute; Department of Pediatrics, University of California, San Diego School of Medicine;

Human lung tissue is composed of an interconnected network of epithelium, mesenchyme, endothelium, and immune cells from the upper airway of the nasopharynx to the smallest alveolar sac. Interactions between these cells are crucial in lung development and disease, acting as a barrier against harmful chemicals and pathogens. Current in vitro co-culture models utilize immortalized cell lines with different biological backgrounds, which may not accurately represent the cellular milieu or interactions of the lung.

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Generation of induced pluripotent cells (hiPSCs)-derived skeletal muscle progenitor cells (SMPCs) holds great promise for regenerative medicine for skeletal muscle wasting diseases, as for example Duchenne Muscular Dystrophy (DMD). Multiple approaches, involving ectopic expression of key regulatory myogenic genes or small molecules cocktails, have been described by different groups to obtain SMPC towards cell-transplantation as a therapeutic approach to skeletal muscle diseases. However, hiPSCs-derived SMPC generated using transgene-free protocols are usually obtained in a low amount and resemble a more embryonal/fetal stage of differentiation.

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Missense mutations in the EPHA1 receptor tyrosine kinase have been identified in Alzheimer's patients. To gain insight into their potential role in disease pathogenesis, we investigated the effects of four of these mutations. We show that the P460L mutation in the second fibronectin type III (FN2) domain drastically reduces EPHA1 cell surface localization while increasing tyrosine phosphorylation of the cell surface localized receptor.

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A hormetic response model for glutamine stress in cancer.

Trends Cancer

December 2024

Cancer Metabolism and Microenvironment Program, NCI-Designated Cancer Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA. Electronic address:

Glutamine metabolism supports the development and progression of many cancers and is considered a therapeutic target. Attempts to inhibit glutamine metabolism have resulted in limited success and have not translated into clinical benefit. The outcomes of these clinical studies, along with preclinical investigations, suggest that cellular stress responses to glutamine deprivation or targeting may be modeled as a biphasic hormetic response.

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Senescent cells drive tissue dysfunction through the senescence-associated secretory phenotype (SASP). We uncovered a central role for mitochondria in the epigenetic regulation of the SASP, where mitochondrial-derived metabolites, specifically citrate and acetyl-CoA, fuel histone acetylation at SASP gene loci, promoting their expression. We identified the mitochondrial citrate carrier (SLC25A1) and ATP-citrate lyase (ACLY) as critical for this process.

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MYOD is an E-box sequence-specific basic Helix-Loop-Helix (bHLH) transcriptional activator that, when expressed in non-muscle cells, induces nuclear reprogramming toward skeletal myogenesis by promoting chromatin accessibility at previously silent loci. Here, we report on the identification of a previously unrecognized property of MYOD as repressor of gene expression, via E-box-independent chromatin binding within accessible genomic elements, which invariably leads to reduced chromatin accessibility. MYOD-mediated repression requires the integrity of functional domains previously implicated in MYOD-mediated activation of gene expression.

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Pancreatic ductal adenocarcinoma (PDAC) tumors are deficient in glutamine, an amino acid that tumor cells and CAFs use to sustain their fitness. In PDAC, both cell types stimulate macropinocytosis as an adaptive response to glutamine depletion. CAFs play a critical role in sculpting the tumor microenvironment, yet how adaptations to metabolic stress impact the stromal architecture remains elusive.

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Article Synopsis
  • Single-nucleus RNA-sequencing (snRNA-seq) was used to explore cellular diversity in the human brain, but traditional methods couldn't capture full-length mRNA isoforms due to short-read limitations.
  • The study combined standard snRNA-seq techniques with long-read sequencing to analyze over 165,000 cells from individuals with Alzheimer's, Lewy body dementia, and Parkinson's disease, revealing distinct gene expression changes and a wide variety of mRNA isoforms.
  • This research enhances our understanding of the human prefrontal cortex's transcriptome and suggests that increased mRNA isoform diversity could offer insights into neurodegenerative diseases and potential therapeutic targets.
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Humidity is an important environmental factor that causes physiological changes in organisms. In humans, high humidity disrupts thermoregulation by limiting heat dissipation, leading to heat stress. While lacks comparable thermoregulatory systems, humidity may still impact its heat tolerance by affecting cellular stress responses.

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Metastasis is a leading cause of cancer-related deaths, yet understanding how metastatic tumors adapt from their origin to their target tissues remains a fundamental challenge. To address this, we assessed whether primary and metastatic tumors more closely resemble their tissues of origin or target tissues in terms of gene expression. We analyzed expression profiles from multiple cancer types and normal tissues, including single-cell and bulk RNA sequencing data from both paired and unpaired patient cohorts.

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Exercise your graft - An important lesson for cell replacement therapy for Parkinson's disease.

Exp Neurol

December 2024

Sanford Consortium for Regenerative Medicine, La Jolla, CA 92037, USA; Sanford Burnham Prebys Medical Discovery Institute, Center for Stem Cells & Regenerative Medicine, La Jolla, CA 92037, USA.

Article Synopsis
  • Parkinson's disease (PD) is a chronic and currently incurable illness affecting millions, leading to increased interest in using pluripotent stem cells for cell replacement therapy to restore lost neurons.
  • Despite advancements in therapy, challenges persist in effectively connecting these new neurons to the existing brain circuits, but combining cell therapy with physical activity may enhance these connections.
  • Exercise, such as treadmill workouts, has been shown to improve motor and cognitive functions in PD patients, enabling them to relearn movements and enhance their neural circuit connections for better overall functioning.
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  • Macropinocytosis is a survival strategy used by cancer cells, especially in nutrient-poor environments, relying heavily on glutamine to sustain themselves, particularly in pancreatic ductal adenocarcinoma (PDAC) cells.
  • The atypical protein kinase C (aPKC) enzymes, specifically PKCζ and PKCι, play a crucial role in regulating macropinocytosis by interacting with scaffold proteins that influence cell structure and function.
  • The research shows that aPKCs enhance macropinocytosis through the relocation of Par3 to microtubules, and their depletion adversely affects cell viability, which can be reversed by restoring macropinocytosis, highlighting the significance of aPKCs in supporting
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  • Bacteria have operons similar to eukaryotic ubiquitination pathways, which include proteins involved in adding and removing ubiquitin-like molecules.
  • Recent studies indicate some of these pathways help bacteria defend against bacteriophages, although many functions remain unclear.
  • This research reveals unique structural diversity in bacterial ubiquitin-like proteins and suggests they form filaments that help bacteria respond to stress through calcium ion interactions.
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Protein tyrosine phosphatases (PTPs) play pivotal roles in myriad cellular processes by counteracting protein tyrosine kinases. Striatal-enriched protein tyrosine phosphatase (STEP, PTPN5) regulates synaptic function and neuronal plasticity in the brain and is a therapeutic target for several neurological disorders. Here, we present three new crystal structures of STEP, each with unexpected features.

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Metabotropic glutamate receptor 7 (mGlu) is a G protein-coupled receptor that is preferentially found in the active zone of neurotransmitter release in the central nervous system (CNS). mGlu plays a vital role in memory, learning, and neuronal development, rendering it a potential target for treating epilepsy, depression, and anxiety. The development of noninvasive imaging ligands targeting mGlu could help elucidate the functional significance of mGlu and accelerate drug discovery for neurological and psychiatric disorders.

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Antigenically distinct SARS-CoV-2 variants increase the reinfection risk for vaccinated and previously exposed population due to antibody neutralization escape. COVID-19 severity depends on many variables, including host immune responses, which differ depending on genetic predisposition. To address this, we perform immune profiling of female mice with different genetic backgrounds -transgenic K18-hACE2 and wild-type 129S1- infected with the severe B.

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A Cyclic Peptide Targets Glioblastoma by Binding to Aberrantly Exposed SNAP25.

Mol Pharm

November 2024

Laboratory of Precision and Nanomedicine, Institute of Biomedicine and Translational Medicine, University of Tartu, Ravila 14b, Tartu 50411, Estonia.

Article Synopsis
  • The study identifies a cyclic peptide called CES that selectively targets glioblastoma tumors, offering insights into disease-specific changes and potential diagnostic markers.* -
  • Researchers found that CES homed in on the tumor vasculature and bound to a protein called SNAP25, which could serve as a receptor for targeting therapies.* -
  • CES was shown to enhance drug delivery and selectively kill glioblastoma cells, indicating SNAP25’s role as both a therapeutic target and a possible marker for glioblastoma detection.*
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Article Synopsis
  • Environmental enteric dysfunction (EED) is a condition impacting the small intestine, frequently seen in stunted children, characterized by damaged gut barrier and reduced nutrient absorption.
  • A study with gnotobiotic mice showed that specific bacterial strains from stunted children can cause inflammation and immune changes similar to those found in EED, impacting gut and brain function.
  • The research highlights a strain, Campylobacter concisus, as a potential contributor to gut issues, suggesting that targeting small intestinal microbiota could lead to new treatments for undernutrition across generations.
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Skeletal muscle tissue self-repair occurs through the finely timed activation of resident muscle stem cells (MuSC). Following perturbation, MuSC exit quiescence, undergo myogenic commitment, and differentiate to regenerate the injured muscle. This process is coordinated by signals present in the tissue microenvironment, however the precise mechanisms by which the microenvironment regulates MuSC activation are still poorly understood.

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Embryos undergo pre-gastrulation cleavage cycles to generate a critical cell mass before transitioning to morphogenesis. The molecular underpinnings of this transition have traditionally centered on zygotic chromatin remodeling and genome activation, as their repression can prevent downstream processes of differentiation and organogenesis. Despite precedents that oxygen depletion can similarly suspend development in early embryos, hinting at a pivotal role for oxygen metabolism in this transition, whether there is a chemical switch that licenses the onset of morphogenesis remains unknown.

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Eph receptor signaling complexes in the plasma membrane.

Trends Biochem Sci

December 2024

Cancer Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA. Electronic address:

Eph receptor tyrosine kinases, together with their cell surface-anchored ephrin ligands, constitute an important cell-cell communication system that regulates physiological and pathological processes in most cell types. This review focuses on the multiple mechanisms by which Eph receptors initiate signaling via the formation of protein complexes in the plasma membrane. Upon ephrin binding, Eph receptors assemble into oligomers that can further aggregate into large complexes.

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Background And Aims: Metabolic dysfunction-associated steatotic liver disease (MASLD) ranges from Metabolic dysfunction-associated steatotic liver (MASL) to Metabolic dysfunction-associated steatohepatitis (MASH) with fibrosis. Activation of Hepatic Stellate Cells (HSCs) into fibrogenic myofibroblasts plays a critical role in the pathogenesis of MASH liver fibrosis. We compared transcriptome and chromatin accessibility of human HSCs from NORMAL, MASL, and MASH livers at single cell resolution.

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Defects at the neuromuscular junction (NMJ) are among the earliest hallmarks of amyotrophic lateral sclerosis (ALS). According to the "dying-back" hypothesis, NMJ disruption not only precedes but also triggers the subsequent degeneration of motoneurons in both sporadic (sALS) and familial (fALS) ALS. Using human induced pluripotent stem cells (iPSCs), we show that the RNA-binding protein HuD (ELAVL4) contributes to NMJ defects and apoptosis in FUS-ALS.

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