1,083 results match your criteria: "SOKENDAI The Graduate University for Advanced Studies.[Affiliation]"
Angew Chem Int Ed Engl
May 2023
Faculty of Pharmaceutical Sciences, Hokkaido University, Kita-ku, Sapporo, 060-0812, Japan.
The synthesis, characterization, and catalytic performance of an iridium(III) catalyst with an electron-deficient cyclopentadienyl ligand ([Cp IrI ] ) are reported. The [Cp IrI ] catalyst was synthesized by complexation of a precursor of the Cp ligand with [Ir(cod)OAc] , followed by oxidation, desilylation, and removal of the COD ligand. The electron-deficient [Cp IrI ] catalyst enabled C-H amidation reactions assisted by a weakly coordinating ether directing group.
View Article and Find Full Text PDFSci Adv
March 2023
Medical Innovation Center/SK Project, Graduate School of Medicine, Kyoto University, Kyoto 606-8507, Japan.
To obtain more of a particular uncertain reward, animals must learn to actively overcome the lack of reward and adjust behavior to obtain it again. The neural mechanisms underlying such coping with reward omission remain unclear. Here, we developed a task in rats to monitor active behavioral switch toward the next reward after no reward.
View Article and Find Full Text PDFSTAR Protoc
March 2023
Institute for Molecular Science, Okazaki, Aichi 444-8787, Japan; SOKENDAI (The Graduate University for Advanced Studies), Okazaki, Aichi 444-8787, Japan. Electronic address:
In this protocol, we describe the application of a halogen(I) complex as a highly active non-metallic complex catalyst. Specifically, we present a detailed guide to synthesize the halogen(I) complex catalyst and utilize it as an anion-binding catalyst for the Mukaiyama-Mannich-type reaction of N-heteroaromatics such as pyridines. By utilizing a simple catalyst preparation approach and relatively low catalyst loading, the steps outlined in this protocol contribute to the rapid development of useful substances such as pharmaceuticals and functional materials.
View Article and Find Full Text PDFBiochem Biophys Res Commun
April 2023
Laboratory of Mock Up Vaccine, Center for Vaccine and Adjuvant Research (CVAR), National Institutes of Biomedical Innovation, Health and Nutrition (NBIOHN), 7-6-8, Asagi, Saito, Ibaraki-City, Osaka, 567-0085, Japan; Division of Vaccine Science, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639, Japan. Electronic address:
The skin is a protective interface between the internal organs and environment and functions not only as a physical barrier but also as an immune organ. However, the immune system in the skin is not fully understood. A member of the thermo-sensitive transient receptor potential (TRP) channel family, TRPM4, which acts as a regulatory receptor in immune cells, was recently reported to be expressed in human skin and keratinocytes.
View Article and Find Full Text PDFFEBS J
September 2023
Structural Biology Research Center, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Ibaraki, Japan.
Sci Rep
February 2023
Mouse Genomics Resource Laboratory, National Institute of Genetics, Mishima, 411-8540, Japan.
Nat Rev Neurosci
May 2023
Division of Sensory and Cognitive Brain Mapping, Department of System Neuroscience, National Institute for Physiological Sciences, Okazaki, Japan.
Food Funct
March 2023
Department of Materials Structure Science, School of High Energy Accelerator Science, SOKENDAI (The Graduate University for Advanced Studies), Tsukuba, Ibaraki 305-0801, Japan.
Front Plant Sci
February 2023
Division of Cellular Dynamics, National Institute for Basic Biology, Okazaki, Japan.
Autophagy is a highly conserved system that delivers cytoplasmic components to lysosomes/vacuoles. Plastids are also degraded through autophagy for nutrient recycling and quality control; however, the involvement of autophagic degradation of plastids in plant cellular differentiation remains unclear. Here, we investigated whether spermiogenesis, the differentiation of spermatids into spermatozoids, in the liverwort involves autophagic degradation of plastids.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
February 2023
Division of Visual Information Processing, National Institute for Physiological Sciences, Okazaki, Aichi 444-8585, Japan.
Subplate neurons are early-born cortical neurons that transiently form neural circuits during perinatal development and guide cortical maturation. Thereafter, most subplate neurons undergo cell death, while some survive and renew their target areas for synaptic connections. However, the functional properties of the surviving subplate neurons remain largely unknown.
View Article and Find Full Text PDFNat Commun
February 2023
Structural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), 1-1 Oho, Tsukuba, Ibaraki, 305-0801, Japan.
Prasiola crispa, an aerial green alga, forms layered colonies under the severe terrestrial conditions of Antarctica. Since only far-red light is available at a deep layer of the colony, P. crispa has evolved a molecular system for photosystem II (PSII) excitation using far-red light with uphill energy transfer.
View Article and Find Full Text PDFCell Rep
February 2023
Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara 8916-5, Japan; Data Science Center, Nara Institute of Science and Technology, Ikoma, Nara 8916-5, Japan. Electronic address:
Limitations in simultaneously observing the activity of multiple molecules in live cells prevent researchers from elucidating how these molecules coordinate the dynamic regulation of cellular functions. Here, we propose the motion-triggered average (MTA) algorithm to characterize pseudo-simultaneous dynamic changes in arbitrary cellular deformation and molecular activities. Using MTA, we successfully extract a pseudo-simultaneous time series from individually observed activities of three Rho GTPases: Cdc42, Rac1, and RhoA.
View Article and Find Full Text PDFAutophagy
May 2023
Department of Cell Biology, National Institute for Basic Biology, Okazaki, Japan.
Light is essential for plant growth, but excessive light energy produces reactive oxygen species (ROS), which can seriously damage cells. Mutants defective in (autophagy related) genes show light intensity-dependent leaf damage and ROS accumulation. We found that autophagy is one of the crucial systems in protecting plants from ROS-induced damage by removing oxidative peroxisomes.
View Article and Find Full Text PDFZoolog Sci
February 2023
SOKENDAI (The Graduate University for Advanced Studies), Department of Evolutionary Studies of Biosystems, Hayama, Kanagawa 240-0193, Japan,
DNA markers that detect differences in the number of microsatellite repeats can be highly effective for genotyping individuals that lack differences in external morphology. However, isolation of sequences with different microsatellite repeat numbers between individuals has been a time-consuming process in the development of DNA markers. Individual identification of Japanese giant flying squirrels () has been challenging because this species is arboreal and nocturnal and exhibits little to no morphological variation between individuals.
View Article and Find Full Text PDFFront Plant Sci
January 2023
Division of Symbiotic Systems, National Institute for Basic Biology, Okazaki, Aichi, Japan.
Legumes develop root nodules in association with compatible rhizobia to overcome nitrogen deficiency. Rhizobia enter the host legume, mainly through infection threads, and induce nodule primordium formation in the root cortex. Multiple transcription factors have been identified to be involved in the regulation of the establishment of root nodule symbiosis, including ERF Required for Nodulation1 (ERN1).
View Article and Find Full Text PDFChemistry
February 2023
Division of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan), .
Invited for the cover of this issue is the group of Shigeyuki Masaoka at Osaka University. The image depicts a Brønsted acid/base pair based on a pentanuclear scaffold, and the formation thermodynamically metastable state of H by the steric isolation of a Brønsted acid/base site. Read the full text of the article at 10.
View Article and Find Full Text PDFMethods Enzymol
January 2023
Department of Laboratory Sciences, Gunma University Graduate School of Health Sciences, Maebashi, Gunma, Japan. Electronic address:
Misfolding is observed in the mutant proteins that are causative for neurodegenerative disorders such as polyglutamine diseases. These proteins are prone to aggregate in the cytoplasm and nucleus of cells. To reproduce cells with the aggregated proteins, gene expression system is usually applied, in which the expression construct having the mutated DNA sequence of the interest is transfected into cells.
View Article and Find Full Text PDFProtein Sci
March 2023
Department of Physics, School of Science, University of Tokyo, Bunkyo-ku, Tokyo, Japan.
The characterization of residual structures persistent in unfolded proteins is an important issue in studies of protein folding, because the residual structures present, if any, may form a folding initiation site and guide the subsequent folding reactions. Here, we studied the residual structures of the isolated B domain (BDPA) of staphylococcal protein A in 6 M guanidinium chloride. BDPA is a small three-helix-bundle protein, and until recently its folding/unfolding reaction has been treated as a simple two-state process between the native and the fully unfolded states.
View Article and Find Full Text PDFPLoS One
January 2023
Department of Oral and Maxillofacial Surgery, Saitama Medical University, Saitama, Japan.
J Chem Phys
January 2023
Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan and SOKENDAI (The Graduate University for Advanced Studies), Myodaiji, Okazaki 444-8585, Japan.
For reproducing the carbon K-edge x-ray absorption spectra of liquid alcohols, inner-shell quantum chemical calculations based on the Hartree-Fock method were performed with the snapshots of the liquid structures obtained by molecular dynamics simulations. The C K-edge inner-shell spectrum of liquid ethanol (EtOH) was obtained by the summation of one thousand calculated spectra of EtOH molecules including neighbor EtOH molecules within the CH-CH distance of 6 Å. For the C K-edge inner-shell spectrum of liquid methanol (MeOH), we have calculated one thousand spectra of MeOH molecules including neighbor MeOH molecules within the CH-CH distance of 6 Å.
View Article and Find Full Text PDFEMBO Rep
March 2023
Interdisciplinary Research Unit, National Institute for Basic Biology, Okazaki, Japan.
Fission yeast undergoes premeiotic nuclear oscillation, which is dependent on microtubules and is driven by cytoplasmic dynein. Although the molecular mechanisms have been analyzed, how a robust oscillation is generated despite the dynamic behaviors of microtubules has yet to be elucidated. Here, we show that the oscillation exhibits cell length-dependent frequency and requires a balance between microtubule and viscous drag forces, as well as proper microtubule dynamics.
View Article and Find Full Text PDFDev Growth Differ
January 2023
Division of Embryology, National Institute for Basic Biology, Okazaki, Japan.
Three-dimensional (3D) registration (i.e., alignment) between two microscopic images is very helpful to study tissues that do not adhere to substrates, such as mouse embryos and organoids, which are often 3D rotated during imaging.
View Article and Find Full Text PDFChemistry
February 2023
Division of Applied Chemistry Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.
The concept of Brønsted-Lowry acids and bases is long and widely recognized as the most reasonable theory to explain the behavior of H ions. Here, we report a Brønsted acid/base pair that does not follow this theory. Two heteronuclear metal complexes, in which Brønsted acid/base sites are sterically isolated, were synthesized and characterized.
View Article and Find Full Text PDFChem Sci
November 2022
Materials Chemistry Course, Faculty of Advanced Science and Technology, Ryukoku University Seta Otsu Shiga 520-2194 Japan
Donor-radical acceptor systems have recently attracted much attention as efficient doublet emitters that offer significant advantages for applications such as OLEDs. We employed an alkylbenzene (mesityl group) as the simplest donor to date and added it to a diphenylpyridylmethyl radical acceptor. The (3,5-difluoro-4-pyridyl)bis[2,6-dichloro-4-(2,4,6-trimethylphenyl)phenyl]methyl radical (MesFPyBTM) was prepared in only three steps from commercially available reagents.
View Article and Find Full Text PDFFood Funct
January 2023
Department of Materials Structure Science, School of High Energy Accelerator Science, SOKENDAI (The Graduate University for Advanced Studies), Tsukuba, Ibaraki 305-0801, Japan.
Rice is a staple food eaten by more than half of the world's population. In recent years, various types of precooked rice products have become commercially available as more and more people, including the elderly, do not have time to prepare meals or are coping with eating disorders. To address this situation, analysis of the internal structure of rice is important to understand the phenomena that occur during cooking rice grains and to develop rice products for specific purpose with desired physical properties.
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