1,083 results match your criteria: "SOKENDAI The Graduate University for Advanced Studies.[Affiliation]"

The synthesis, characterization, and catalytic performance of an iridium(III) catalyst with an electron-deficient cyclopentadienyl ligand ([Cp IrI ] ) are reported. The [Cp IrI ] catalyst was synthesized by complexation of a precursor of the Cp ligand with [Ir(cod)OAc] , followed by oxidation, desilylation, and removal of the COD ligand. The electron-deficient [Cp IrI ] catalyst enabled C-H amidation reactions assisted by a weakly coordinating ether directing group.

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Dopamine error signal to actively cope with lack of expected reward.

Sci Adv

March 2023

Medical Innovation Center/SK Project, Graduate School of Medicine, Kyoto University, Kyoto 606-8507, Japan.

To obtain more of a particular uncertain reward, animals must learn to actively overcome the lack of reward and adjust behavior to obtain it again. The neural mechanisms underlying such coping with reward omission remain unclear. Here, we developed a task in rats to monitor active behavioral switch toward the next reward after no reward.

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In this protocol, we describe the application of a halogen(I) complex as a highly active non-metallic complex catalyst. Specifically, we present a detailed guide to synthesize the halogen(I) complex catalyst and utilize it as an anion-binding catalyst for the Mukaiyama-Mannich-type reaction of N-heteroaromatics such as pyridines. By utilizing a simple catalyst preparation approach and relatively low catalyst loading, the steps outlined in this protocol contribute to the rapid development of useful substances such as pharmaceuticals and functional materials.

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Roles of TRPM4 in immune responses in keratinocytes and identification of a novel TRPM4-activating agent.

Biochem Biophys Res Commun

April 2023

Laboratory of Mock Up Vaccine, Center for Vaccine and Adjuvant Research (CVAR), National Institutes of Biomedical Innovation, Health and Nutrition (NBIOHN), 7-6-8, Asagi, Saito, Ibaraki-City, Osaka, 567-0085, Japan; Division of Vaccine Science, Department of Microbiology and Immunology, The Institute of Medical Science, The University of Tokyo, 4-6-1, Shirokanedai, Minato-ku, Tokyo, 108-8639, Japan. Electronic address:

The skin is a protective interface between the internal organs and environment and functions not only as a physical barrier but also as an immune organ. However, the immune system in the skin is not fully understood. A member of the thermo-sensitive transient receptor potential (TRP) channel family, TRPM4, which acts as a regulatory receptor in immune cells, was recently reported to be expressed in human skin and keratinocytes.

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Functional molecular evolution of a GTP sensing kinase: PI5P4Kβ.

FEBS J

September 2023

Structural Biology Research Center, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Ibaraki, Japan.

Article Synopsis
  • Over 4 billion years of evolution have shaped de novo genes into proteins with new functions that are vital for complex cellular operations.
  • Research has highlighted how the protein phosphatidylinositol 5-phosphate 4-kinase β (PI5P4Kβ) evolved from using ATP to sensing GTP, facilitated by key mutations.
  • Understanding the transition of PI5P4Kβ to a GTP sensor offers insights into the evolutionary processes that enable proteins to gain new activities, which can significantly impact cellular metabolism and tumor development.
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Investigating human visual cortex variability.

Nat Rev Neurosci

May 2023

Division of Sensory and Cognitive Brain Mapping, Department of System Neuroscience, National Institute for Physiological Sciences, Okazaki, Japan.

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Article Synopsis
  • The study utilizes synchrotron radiation X-ray phase-contrast computed tomography to visualize the internal structures of rice grains in precooked products.
  • The research focuses on how this advanced imaging technique can reveal morphological characteristics that are important for food science and engineering.
  • Results from the study aim to enhance understanding of rice grain composition, potentially improving quality control and processing methods in the food industry.
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Autophagy is a highly conserved system that delivers cytoplasmic components to lysosomes/vacuoles. Plastids are also degraded through autophagy for nutrient recycling and quality control; however, the involvement of autophagic degradation of plastids in plant cellular differentiation remains unclear. Here, we investigated whether spermiogenesis, the differentiation of spermatids into spermatozoids, in the liverwort involves autophagic degradation of plastids.

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Subplate neurons are early-born cortical neurons that transiently form neural circuits during perinatal development and guide cortical maturation. Thereafter, most subplate neurons undergo cell death, while some survive and renew their target areas for synaptic connections. However, the functional properties of the surviving subplate neurons remain largely unknown.

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Uphill energy transfer mechanism for photosynthesis in an Antarctic alga.

Nat Commun

February 2023

Structural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), 1-1 Oho, Tsukuba, Ibaraki, 305-0801, Japan.

Prasiola crispa, an aerial green alga, forms layered colonies under the severe terrestrial conditions of Antarctica. Since only far-red light is available at a deep layer of the colony, P. crispa has evolved a molecular system for photosystem II (PSII) excitation using far-red light with uphill energy transfer.

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Decoding cellular deformation from pseudo-simultaneously observed Rho GTPase activities.

Cell Rep

February 2023

Graduate School of Science and Technology, Nara Institute of Science and Technology, Ikoma, Nara 8916-5, Japan; Data Science Center, Nara Institute of Science and Technology, Ikoma, Nara 8916-5, Japan. Electronic address:

Limitations in simultaneously observing the activity of multiple molecules in live cells prevent researchers from elucidating how these molecules coordinate the dynamic regulation of cellular functions. Here, we propose the motion-triggered average (MTA) algorithm to characterize pseudo-simultaneous dynamic changes in arbitrary cellular deformation and molecular activities. Using MTA, we successfully extract a pseudo-simultaneous time series from individually observed activities of three Rho GTPases: Cdc42, Rac1, and RhoA.

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Light is essential for plant growth, but excessive light energy produces reactive oxygen species (ROS), which can seriously damage cells. Mutants defective in (autophagy related) genes show light intensity-dependent leaf damage and ROS accumulation. We found that autophagy is one of the crucial systems in protecting plants from ROS-induced damage by removing oxidative peroxisomes.

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DNA markers that detect differences in the number of microsatellite repeats can be highly effective for genotyping individuals that lack differences in external morphology. However, isolation of sequences with different microsatellite repeat numbers between individuals has been a time-consuming process in the development of DNA markers. Individual identification of Japanese giant flying squirrels () has been challenging because this species is arboreal and nocturnal and exhibits little to no morphological variation between individuals.

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Legumes develop root nodules in association with compatible rhizobia to overcome nitrogen deficiency. Rhizobia enter the host legume, mainly through infection threads, and induce nodule primordium formation in the root cortex. Multiple transcription factors have been identified to be involved in the regulation of the establishment of root nodule symbiosis, including ERF Required for Nodulation1 (ERN1).

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Brønsted Acid/Base Site Isolated in a Pentanuclear Scaffold.

Chemistry

February 2023

Division of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan), .

Invited for the cover of this issue is the group of Shigeyuki Masaoka at Osaka University. The image depicts a Brønsted acid/base pair based on a pentanuclear scaffold, and the formation thermodynamically metastable state of H by the steric isolation of a Brønsted acid/base site. Read the full text of the article at 10.

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Misfolding is observed in the mutant proteins that are causative for neurodegenerative disorders such as polyglutamine diseases. These proteins are prone to aggregate in the cytoplasm and nucleus of cells. To reproduce cells with the aggregated proteins, gene expression system is usually applied, in which the expression construct having the mutated DNA sequence of the interest is transfected into cells.

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The characterization of residual structures persistent in unfolded proteins is an important issue in studies of protein folding, because the residual structures present, if any, may form a folding initiation site and guide the subsequent folding reactions. Here, we studied the residual structures of the isolated B domain (BDPA) of staphylococcal protein A in 6 M guanidinium chloride. BDPA is a small three-helix-bundle protein, and until recently its folding/unfolding reaction has been treated as a simple two-state process between the native and the fully unfolded states.

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Article Synopsis
  • Both Achilles and masticatory muscle tendons are large structures that can undergo changes due to excessive mechanical loading, leading to limited mouth opening in the maxillofacial region.
  • This study investigated the gene expression patterns of masticatory muscle tendons compared to Achilles tendons under tensile strain in the Japanese macaque, finding 1,076 differentially expressed genes.
  • Out of these, 147 genes were specifically different between the masticatory tendons, with some genes linked to tendon properties showing increased or decreased expression depending on the type of tendon under strain.
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For reproducing the carbon K-edge x-ray absorption spectra of liquid alcohols, inner-shell quantum chemical calculations based on the Hartree-Fock method were performed with the snapshots of the liquid structures obtained by molecular dynamics simulations. The C K-edge inner-shell spectrum of liquid ethanol (EtOH) was obtained by the summation of one thousand calculated spectra of EtOH molecules including neighbor EtOH molecules within the CH-CH distance of 6 Å. For the C K-edge inner-shell spectrum of liquid methanol (MeOH), we have calculated one thousand spectra of MeOH molecules including neighbor MeOH molecules within the CH-CH distance of 6 Å.

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Fission yeast undergoes premeiotic nuclear oscillation, which is dependent on microtubules and is driven by cytoplasmic dynein. Although the molecular mechanisms have been analyzed, how a robust oscillation is generated despite the dynamic behaviors of microtubules has yet to be elucidated. Here, we show that the oscillation exhibits cell length-dependent frequency and requires a balance between microtubule and viscous drag forces, as well as proper microtubule dynamics.

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Three-dimensional (3D) registration (i.e., alignment) between two microscopic images is very helpful to study tissues that do not adhere to substrates, such as mouse embryos and organoids, which are often 3D rotated during imaging.

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Brønsted Acid/Base Site Isolated in a Pentanuclear Scaffold.

Chemistry

February 2023

Division of Applied Chemistry Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, 565-0871, Japan.

The concept of Brønsted-Lowry acids and bases is long and widely recognized as the most reasonable theory to explain the behavior of H ions. Here, we report a Brønsted acid/base pair that does not follow this theory. Two heteronuclear metal complexes, in which Brønsted acid/base sites are sterically isolated, were synthesized and characterized.

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Donor-radical acceptor systems have recently attracted much attention as efficient doublet emitters that offer significant advantages for applications such as OLEDs. We employed an alkylbenzene (mesityl group) as the simplest donor to date and added it to a diphenylpyridylmethyl radical acceptor. The (3,5-difluoro-4-pyridyl)bis[2,6-dichloro-4-(2,4,6-trimethylphenyl)phenyl]methyl radical (MesFPyBTM) was prepared in only three steps from commercially available reagents.

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Rice is a staple food eaten by more than half of the world's population. In recent years, various types of precooked rice products have become commercially available as more and more people, including the elderly, do not have time to prepare meals or are coping with eating disorders. To address this situation, analysis of the internal structure of rice is important to understand the phenomena that occur during cooking rice grains and to develop rice products for specific purpose with desired physical properties.

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