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BMC Bioinformatics
November 2013
SISSA (International School for Advanced Studies) Functional Analysis Dept, - Via Bonomea 265 - 34136, Trieste, Italy.
Motivation: Within Flux Balance Analysis, the investigation of complex subtasks, such as finding the optimal perturbation of the network or finding an optimal combination of drugs, often requires to set up a bilevel optimization problem. In order to keep the linearity and convexity of these nested optimization problems, an ON/OFF description of the effect of the perturbation (i.e.
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