16,712 results match your criteria: "Rockefeller University.[Affiliation]"

The E-cadherin-β-catenin-αE-catenin (cadherin-catenin) complex couples the cytoskeletons of neighboring cells at adherens junctions (AJs) to mediate force transmission across epithelia. Mechanical force and auxiliary binding partners converge to stabilize the cadherin-catenin complex's inherently weak binding to actin filaments (F-actin) through unclear mechanisms. Here we show that afadin's coiled-coil (CC) domain and vinculin synergistically enhance the cadherin-catenin complex's F-actin engagement.

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We present a genome assembly from an individual female (Chordata; Mammalia; Chiroptera; Molossidae). The genome sequence is 2.490 Gb in span.

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Comprehensive Catalog of Variants Potentially Associated with Hidradenitis Suppurativa, Including Newly Identified Variants from a Cohort of 100 Patients.

Int J Mol Sci

September 2024

Team 16, Vaccine Research Institute (VRI), INSERM U955, Institut Mondor de Recherche Biomédicale (IMRB), Henri-Mondor Hospital, UPEC, 94000 Créteil, France.

Hidradenitis suppurativa (HS) is a chronic skin disease characterized by painful, recurrent abscesses, nodules, and scarring, primarily in skin folds. The exact causes of HS are multifactorial, involving genetic, hormonal, and environmental factors. It is associated with systemic diseases such as metabolic syndrome and inflammatory bowel disease.

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Patients heterozygous for germline CBL loss-of-function (LOF) variants can develop myeloid malignancy, autoinflammation, or both, if some or all of their leukocytes become homozygous for these variants through somatic loss of heterozygosity (LOH) via uniparental isodisomy. We observed an upregulation of the inflammatory gene expression signature in whole blood from these patients, mimicking monogenic inborn errors underlying autoinflammation. Remarkably, these patients had constitutively activated monocytes that secreted 10 to 100 times more inflammatory cytokines than those of healthy individuals and CBL LOF heterozygotes without LOH.

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How condensed are mitotic chromosomes?

J Cell Biol

November 2024

Laboratory of Chromosome and Cell Biology, The Rockefeller University, New York, NY, USA.

Chromosomes undergo dramatic compaction during mitosis, but accurately measuring their volume has been challenging. Employing serial block face scanning electron microscopy, Cisneros-Soberanis et al. (https://doi.

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Connecting the dots on connexin function.

J Gen Physiol

November 2024

Science Writer, Rockefeller University Press, New York, NY, USA.

Article Synopsis
  • Two recent studies published in the Journal of General Physiology (JGP) investigate the impact of slight variations in the pore-lining regions of connexin26 and connexin30 on their functionality.
  • The research highlights how these small changes can affect the performance of gap junctions and hemichannels, which are critical for cellular communication.
  • The findings provide insights into the structural properties of these proteins and their roles in health and disease.
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The IBEX Knowledge-Base: Achieving more together with open science.

ArXiv

July 2024

Bioinformatics and Computational Bioscience Branch, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA.

Iterative Bleaching Extends multipleXity (IBEX) is a versatile method for highly multiplexed imaging of diverse tissues. Based on open science principles, we created the IBEX Knowledge-Base, a resource for reagents, protocols and more, to empower innovation.

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A platform to map the mind-mitochondria connection and the hallmarks of psychobiology: the MiSBIE study.

Trends Endocrinol Metab

October 2024

Division of Behavioral Medicine, Department of Psychiatry, Columbia University Irving Medical Center, New York, NY, USA; H. Houston Merritt Center for Neuromuscular and Mitochondrial Disorders, Columbia Translational Neuroscience Initiative, Department of Neurology, Columbia University Medical Center, New York, NY, USA; Robert N. Butler Columbia Aging Center, Columbia University Mailman School of Public Health, New York, NY, USA; New York State Psychiatric Institute, New York, NY, USA. Electronic address:

Article Synopsis
  • Health is influenced by mitochondrial energy transformation, which plays a crucial role in regulating various body systems that relate to resilience and disease risk throughout life.
  • The MiSBIE study aims to explore how mitochondria affect interconnected systems like neuroendocrine, immune, and cognitive functions, focusing on individuals with mitochondrial diseases.
  • This research seeks to enhance understanding of mitochondrial diseases, develop new health biomarkers, and better integrate knowledge of the connections between energy processes and overall health.
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DNA polymerase ζ is a robust reverse transcriptase.

bioRxiv

September 2024

Howard Hughes Medical Ins5tute and the Department of DNA Replica5on, The Rockefeller University New York, NY 10065.

Cell biology and genetic studies have demonstrated that DNA double strand break (DSB) repair can be performed using an RNA transcript that spans the site of the DNA break as a template for repair. This type of DSB repair requires a reverse transcriptase to convert an RNA sequence into DNA to facilitate repair of the break, rather than copying from a DNA template as in canonical DSB repair. Translesion synthesis (TLS) DNA polymerases (Pol) are often more promiscuous than DNA Pols, raising the notion that reverse transcription could be performed by a TLS Pol.

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  • Brown adipose tissue (BAT) allows mammals to regulate body temperature through a process called adaptive thermogenesis, which is stimulated by cold exposure.
  • Researchers identified a factor called Slit3 that facilitates communication between adipocyte progenitors, blood vessel cells, and sympathetic nerves, which is vital for BAT's thermogenic function.
  • The study reveals that Slit3 not only aids the growth of blood vessels and nerves in BAT but also involves a special cleaving process that releases fragments of Slit3 to activate different receptors, highlighting a complex interaction within adipose tissue that influences its response to cold.
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Mapping and engineering RNA-controlled architecture of the multiphase nucleolus.

bioRxiv

September 2024

Department of Chemical and Biological Engineering, Princeton University, Princeton, NJ 08544, USA.

Biomolecular condensates are key features of intracellular compartmentalization. As the most prominent nuclear condensate in eukaryotes, the nucleolus is a layered multiphase liquid-like structure and the site of ribosome biogenesis. In the nucleolus, ribosomal RNAs (rRNAs) are transcribed and processed, undergoing multiple maturation steps that ultimately result in formation of the ribosomal small subunit (SSU) and large subunit (LSU).

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Article Synopsis
  • Mate recognition systems in Drosophila (fruit flies) evolve quickly to help differentiate between species, but the brain mechanisms behind this are not well understood.
  • The study examines how female pheromones and male pheromone perception coevolve, particularly focusing on the evolution of the male's use of a specific non-distinct pheromone (7-tricosene) to initiate courtship.
  • Researchers found that adaptations in the sensory circuits, including new sensitivity in certain neurons, enable this pheromone to effectively trigger male courtship behavior, suggesting a modular system in the brain that supports the evolution of mate recognition.
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Bidirectional regulation of motor circuits using magnetogenetic gene therapy.

Sci Adv

October 2024

Laboratory of Molecular Neurosurgery, Department of Neurological Surgery, Weill Cornell Medical College, Cornell University, New York, NY 10065, USA.

Here, we report a magnetogenetic system, based on a single anti-ferritin nanobody-TRPV1 receptor fusion protein, which regulated neuronal activity when exposed to magnetic fields. Adeno-associated virus (AAV)-mediated delivery of a floxed nanobody-TRPV1 into the striatum of adenosine-2a receptor-Cre drivers resulted in motor freezing when placed in a magnetic resonance imaging machine or adjacent to a transcranial magnetic stimulation device. Functional imaging and fiber photometry confirmed activation in response to magnetic fields.

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Terez Shea-Donohue is the program director of the Division of Digestive Diseases and Nutrition at the National Institute of Diabetes and Digestive and Kidney Diseases of the National Institutes of Health. As a program director, Terez supports basic and translational research related to neurogastroenterology, gastrointestinal (GI), and GI epithelial barrier function. We spoke to Terez about the transition from active research to a predominantly administrative job, the need for life-long mentorship, and the continued sex/gender bias in health care.

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  • Platelet clot retraction plays a crucial role in stabilizing clots and requires functional αIIbβ3 receptors and fibrin, along with the platelet cytoskeleton's contractile activity.
  • Recent research found that even when platelet aggregation is blocked using the αIIbβ3 antagonist RGDW, clot retraction still occurs, leading to the development of a high-throughput assay to identify small molecule inhibitors of this process.
  • A screening of over 9,700 compounds revealed 27 inhibitors of clot retraction, including established antiplatelet drugs and new compounds, with further studies suggesting these may have unique mechanisms to inhibit thrombosis.
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  • Data-Independent Acquisition (DIA) enhances co-immunoprecipitation analysis by reducing quantitation variability and improving the detection of specific interactors compared to Data-Dependent Acquisition (DDA).
  • A comparison of DIA and DDA across various bioinformatics workflows revealed that DIA can effectively generate spectral libraries without needing separate DDA experiments, and software struggles with indistinct signals from mock pull-downs.
  • Spectronaut and DIA-NN provided the best control of coefficient of variation in protein quantification, while using DIA for both building spectral libraries and quantifying proteins leads to more consistent results and fewer missing values.
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Dendritic cells (DCs) are uniquely capable of transporting tumor antigens to tumor-draining lymph nodes (tdLNs) and interact with effector T cells in the tumor microenvironment (TME) itself, mediating both natural antitumor immunity and the response to checkpoint blockade immunotherapy. Using LIPSTIC (Labeling Immune Partnerships by SorTagging Intercellular Contacts)-based single-cell transcriptomics, we identified individual DCs capable of presenting antigen to CD4 T cells in both the tdLN and TME. Our findings revealed that DCs with similar hyperactivated transcriptional phenotypes interact with helper T cells both in tumors and in the tdLN and that checkpoint blockade drugs enhance these interactions.

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Folded RNAs contain tertiary contact motifs whose structures and energetics are conserved across different RNAs. The transferable properties of RNA motifs simplify the RNA folding problem, but measuring energetic and conformational properties of many motifs remains a challenge. Here, we use a high-throughput thermodynamic approach to investigate how sequence changes alter the binding properties of naturally occurring motifs, the GAAA tetraloop • tetraloop receptor (TLR) interactions.

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Pathogen encounter can result in epigenetic remodeling that shapes disease caused by heterologous pathogens. Here, we examined innate immune memory in the context of commonly circulating respiratory viruses. Single-cell analyses of airway-resident immune cells in a disease-relevant murine model of SARS-CoV-2 recovery revealed epigenetic reprogramming in alveolar macrophages following infection.

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  • Pachytene piRNAs, specifically 21URNAs, are believed to regulate non-transposon gene sequences during the process of sperm development (spermatogenesis).
  • A disruption in 21URNAs leads to improper homolog pairing and issues with chromosome crossover and segregation, ultimately affecting spermatogenesis.
  • Polo-like kinase 3 (PLK-3) is identified as a target of 21URNAs, which restricts its expression in specific cells; the loss of this regulation is linked to defects in the meiotic process.
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  • * A study examined 131 female patients with X-linked dominant incontinentia pigmenti (IP), finding that 36% produced autoantibodies against IFN-α and/or IFN-ω, significantly higher than age-matched controls.
  • * The presence of these autoantibodies is linked to an abnormally small thymus and predisposes patients to life-threatening viral infections, while those without these autoantibodies do not face the same risk.
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IL-7-dependent and -independent lineages of IL-7R-dependent human T cells.

J Clin Invest

October 2024

Laboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U1163, Necker Hospital for Sick Children, Paris, France.

Article Synopsis
  • Some babies with a specific mutation in the IL7R gene have a serious immune problem called SCID, where they lack a certain type of immune cells called T cells, but still have normal B and NK cells.
  • In a study of 6 adults who have a similar genetic issue, they showed low levels of T cells but had relatively normal levels of other immune cells, indicating a more specific problem in T cell development.
  • Even though their T cells didn’t grow well in the lab, the study hints that there might be another way T cells can develop that doesn’t depend solely on the IL-7 cytokine.
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Ribosome quality control (RQC) resolves collided ribosomes, thus preventing their cytotoxic effects. The chemotherapeutic agent 5-Fluorouracil (5FU) is best known for its misincorporation into DNA and inhibition of thymidylate synthase. However, while a major determinant of 5FU's anticancer activity is its misincorporation into RNAs, the mechanisms by which cancer cells overcome the RNA-dependent 5FU toxicity remain ill-defined.

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Background: Most smokers attempting to quit will quickly relapse to tobacco use even when treated with the most efficacious smoking cessation agents currently available. This highlights the need to develop effective new smoking cessation medications. Evidence suggests that positive allosteric modulators (PAM) and other enhancers of nicotinic acetylcholine receptor (nAChR) signaling could have therapeutic utility as smoking cessation agents.

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