16,736 results match your criteria: "Rockefeller University.[Affiliation]"

Structure of the flotillin complex in a native membrane environment.

Proc Natl Acad Sci U S A

July 2024

Laboratory of Molecular Neurobiology and Biophysics, The Rockefeller University, New York, NY 10065.

In this study, we used cryoelectron microscopy to determine the structures of the Flotillin protein complex, part of the Stomatin, Prohibitin, Flotillin, and HflK/C (SPFH) superfamily, from cell-derived vesicles without detergents. It forms a right-handed helical barrel consisting of 22 pairs of Flotillin1 and Flotillin2 subunits, with a diameter of 32 nm at its wider end and 19 nm at its narrower end. Oligomerization is stabilized by the C terminus, which forms two helical layers linked by a β-strand, and coiled-coil domains that enable strong charge-charge intersubunit interactions.

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Hidradenitis suppurativa (HS) is an inflammatory skin disease characterized by painful nodules, abscesses and purulent secretions in intertriginous regions. Intense pruritus frequently accompanies HS lesions, adding further discomfort for patients. While Th17 pathway activation is implicated in HS pathogenesis, disease mechanisms are still not fully understood, and therapeutics are lacking.

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Programmed telomere shortening limits tumorigenesis through the induction of replicative senescence. Here we address three long-standing questions concerning senescence. First, we show that the ATM kinase is solely responsible for the induction of replicative senescence.

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Organisms maintain metabolic homeostasis through the combined functions of small-molecule transporters and enzymes. While many metabolic components have been well established, a substantial number remains without identified physiological substrates. To bridge this gap, we have leveraged large-scale plasma metabolome genome-wide association studies (GWAS) to develop a multiomic Gene-Metabolite Association Prediction (GeneMAP) discovery platform.

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The African BioGenome Project (AfricaBP) Open Institute for Genomics and Bioinformatics aims to overcome barriers to capacity building through its distributed African regional workshops and prioritizes the exchange of grassroots knowledge and innovation in biodiversity genomics and bioinformatics. In 2023, we implemented 28 workshops on biodiversity genomics and bioinformatics, covering 11 African countries across the 5 African geographical regions. These regional workshops trained 408 African scientists in hands-on molecular biology, genomics and bioinformatics techniques as well as the ethical, legal and social issues associated with acquiring genetic resources.

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Article Synopsis
  • The study examines a previously healthy patient who suffered two severe infections: West Nile Virus (WNV) and SARS-CoV-2, revealing factors that contributed to the severity of these illnesses.
  • During the hospital stay for COVID-19, the patient was diagnosed with a thymoma, a tumor of the thymus gland, which was present during the WNV infection.
  • Genetic factors, such as certain variants in the TLR3 and CCR5 genes, as well as the presence of auto-antibodies linked to the thymoma, were identified as increasing the patient's susceptibility to serious complications from both infections.
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The past 20 years have seen the definition of human monogenic disorders and their autoimmune phenocopies underlying either defective or enhanced type I interferon (IFN) activity. These disorders delineate the impact of type I IFNs in natural conditions and demonstrate that only a narrow window of type I IFN activity is beneficial. Insufficient type I IFN predisposes humans to life-threatening viral diseases (albeit unexpectedly few) with a central role in immunity to respiratory and cerebral viral infection.

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T follicular regulatory (T) cells can counteract the B cell helper activity of T follicular helper (T) cells and hinder the production of antibodies against self-antigens or allergens. A mechanistic understanding of the cytokines initiating the differentiation of human regulatory T (T) cells into T cells is still missing. Herein, we report that low doses of the pro-T cytokine interleukin-12 (IL-12) drive the induction of a T cell program on activated human T cells while also preserving their regulatory function.

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  • - Monoclonal antibodies (mAbs) have been used to study the platelet αIIbβ3 protein, and a new mAb called R21D10 was identified that interferes with protein disulfide isomerase (PDI) binding to activated platelets.
  • - R21D10 not only inhibits PDI binding but also affects fibrinogen and PAC-1 binding, as well as platelet aggregation induced by specific peptides, without impacting the binding of other known mAbs against αIIbβ3.
  • - Structural analysis using cryogenic electron microscopy showed that R21D10 binds to a specific domain on β3 integrin and induces conformational changes in αIIbβ3, suggesting a
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Acquired resistance to PARP inhibitors (PARPi) remains a treatment challenge for BRCA1/2-mutant breast cancer that drastically shortens patient survival. Although several resistance mechanisms have been identified, none have been successfully targeted in the clinic. Using new PARPi-resistance models of Brca1- and Bard1-mutant breast cancer generated in-vivo, we identified FLT1 (VEGFR1) as a driver of resistance.

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Apoptotic and Nonapoptotic Cell Death in Development.

Annu Rev Genet

November 2024

Laboratory of Developmental Genetics, The Rockefeller University, New York, NY, USA; email:

Programmed cell death (PCD) is an essential component of animal development, and aberrant cell death underlies many disorders. Understanding mechanisms that govern PCD during development can provide insight into cell death programs that are disrupted in disease. Key steps mediating apoptosis, a highly conserved cell death program employing caspase proteases, were first uncovered in the nematode , a powerful model system for PCD research.

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The essential Mediator (MED) coactivator complex plays a well-understood role in regulation of basal transcription in all eukaryotes, but the mechanism underlying its role in activator-dependent transcription remains unknown. We investigated modulation of metazoan MED interaction with RNA polymerase II (RNA Pol II) by antagonistic effects of the MED26 subunit and the CDK8 kinase module (CKM). Biochemical analysis of CKM-MED showed that the CKM blocks binding of the RNA Pol II carboxy-terminal domain (CTD), preventing RNA Pol II interaction.

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A familiar face and person processing area in the human temporal pole.

Proc Natl Acad Sci U S A

July 2024

Laboratory of Neural Systems, The Rockefeller University, New York, NY 10065.

How does the brain process the faces of familiar people? Neuropsychological studies have argued for an area of the temporal pole (TP) linking faces with person identities, but magnetic susceptibility artifacts in this region have hampered its study with fMRI. Using data acquisition and analysis methods optimized to overcome this artifact, we identify a familiar face response in TP, reliably observed in individual brains. This area responds strongly to visual images of familiar faces over unfamiliar faces, objects, and scenes.

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During formation of the transcription-competent open complex (RPo) by bacterial RNA polymerases (RNAPs), transient intermediates pile up before overcoming a rate-limiting step. Structural descriptions of these interconversions in real time are unavailable. To address this gap, here we use time-resolved cryogenic electron microscopy (cryo-EM) to capture four intermediates populated 120 ms or 500 ms after mixing Escherichia coli σ-RNAP and the λP promoter.

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A search is presented for baryon number violating interactions in top quark production and decay. The analysis uses data from proton-proton collisions at a center-of-mass energy of 13 TeV, collected with the CMS detector at the LHC with an integrated luminosity of 138  fb^{-1}. Candidate events are selected by requiring two oppositely charged leptons (electrons or muons) and exactly one jet identified as originating from a bottom quark.

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The clonal raider ant, , is a queenless species that reproduces asexually, and these traits make it an attractive model system for laboratory research. However, it is unclear where on the ant phylogeny these traits evolved, partly because few closely related species have been described and studied. Here, we describe a new raider ant species, , from Zhejiang, China.

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Article Synopsis
  • Direct methods for assessing DNA polymerase fidelity are straightforward, but measuring RNA polymerases and reverse transcriptases is trickier due to extra preparation steps that can lead to errors.
  • The new method, Roll-Seq, uses single molecule real-time sequencing to evaluate the fidelity of RNA polymerases and reverse transcriptases simultaneously, by generating long concatemeric cDNA from a circular RNA template.
  • Roll-Seq results showed that while some reverse transcriptases had consistent substitution rates, others demonstrated lower fidelity during second-strand synthesis, highlighting the importance of RNA structure on polymerase accuracy.
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Reexamining the use of race in medical algorithms: the maternal health calculator debate.

Front Public Health

June 2024

Laboratory of the Neurogenetics of Language, Rockefeller University, New York, NY, United States.

The concept of race is prevalent in medical, nursing, and public health literature. Clinicians often incorporate race into diagnostics, prognostic tools, and treatment guidelines. An example is the recently heavily debated use of race and ethnicity in the Vaginal Birth After Cesarean (VBAC) calculator.

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Background: Systemic lupus erythematosus (SLE) is a chronic autoimmune disease with an unpredictable course of recurrent exacerbations alternating with more stable disease. SLE is characterized by broad immune activation and autoantibodies against double-stranded DNA and numerous proteins that exist in cells as aggregates with nucleic acids, such as Ro60, MOV10, and the L1 retrotransposon-encoded ORF1p.

Results: Here we report that these 3 proteins are co-expressed and co-localized in a subset of SLE granulocytes and are concentrated in cytosolic dots that also contain DNA: RNA heteroduplexes and the DNA sensor ZBP1, but not cGAS.

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Background: Female Aedes aegypti mosquitoes can spread disease-causing pathogens when they bite humans to obtain blood nutrients required for egg production. Following a complete blood meal, host-seeking is suppressed until eggs are laid. Neuropeptide Y-like receptor 7 (NPYLR7) plays a role in endogenous host-seeking suppression and previous work identified small-molecule NPYLR7 agonists that inhibit host-seeking and blood-feeding when fed to mosquitoes at high micromolar doses.

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(1) Background: DNA damage is of great importance in the understanding of the effects of ionizing radiation. Various types of DNA damage can result from exposure to ionizing radiation, with clustered types considered the most important for radiobiological effects. (2) Methods: The code RITRACKS (Relativistic Ion Tracks), a program that simulates stochastic radiation track structures, was used to simulate DNA damage by photons and ions spanning a broad range of linear energy transfer (LET) values.

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Enlargement of the cerebrospinal fluid (CSF)-filled brain ventricles (cerebral ventriculomegaly), the cardinal feature of congenital hydrocephalus (CH), is increasingly recognized among patients with autism spectrum disorders (ASD). a member of Katanin family microtubule-severing ATPases, is a known ASD risk gene, but its roles in human brain development remain unclear. Here, we show that nonsense truncation of () in mice results in classic ciliopathy phenotypes, including impaired spermatogenesis and cerebral ventriculomegaly.

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A nucleosome switch primes Hepatitis B Virus infection.

bioRxiv

June 2024

Tri-Institutional PhD Program in Chemical Biology; New York, NY 10065, USA.

Chronic hepatitis B virus (HBV) infection is an incurable global health threat responsible for causing liver disease and hepatocellular carcinoma. During the genesis of infection, HBV establishes an independent minichromosome consisting of the viral covalently closed circular DNA (cccDNA) genome and host histones. The viral X gene must be expressed immediately upon infection to induce degradation of the host silencing factor, Smc5/6.

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Article Synopsis
  • Individual vimentin intermediate filaments (VIFs) are transported in the cytoplasm by motor proteins along microtubules, and their behavior was previously difficult to study due to their dense packing in networks.
  • *Using a new labeling strategy called sparse vimentin-SunTag, researchers were able to visualize single VIF dynamics and confirm both long-range and bidirectional transport within the perinuclear region.
  • *High-resolution electron microscopy revealed that VIFs form fluctuating bundles with minimal alignment to microtubules, suggesting complex interactions between these cytoskeletal components.*
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