153 results match your criteria: "Richard Gilder Graduate School[Affiliation]"

An additional ✝Archearadinae flat-bug species from Cretaceous Burmese Amber (Hemiptera, Aradidae).

Zookeys

November 2024

Montreal Insectarium, 4581 rue Sherbrooke est, Montréal, H1X 2B2, Québec, Canada Montreal Insectarium Montreal Canada.

Currently 19 species of Aradidae (flat bugs) are known from the Cretaceous deposits of Burma (Burmese/Kachin amber). In reviewing unidentified aradid species from this deposit, an unnamed species was located. This aradid includes a unique combination of features from several Cretaceous aradid genera coupled with apomorphic antennae morphology allows easy differentiation from other aradids.

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Variation in lanternfish (Myctophidae) photophore structure: A comprehensive comparative analysis.

PLoS One

November 2024

Department of Ichthyology, Division of Vertebrate Zoology, American Museum of Natural History, New York, New York, United States of America.

The deep-sea open ocean habitat (below 200 m depth) is comprised of little-to-no light, near freezing temperatures, and vastly connected stratified waters. Bioluminescence is often linked to the success and diversification of fishes in these dark deep-sea habitats, which are host to many species-rich and morphologically diverse clades. Fish bioluminescence takes many forms and is used in a variety of behaviors including counterillumination, prey detection and luring, communication, and predator avoidance.

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Carotenoid pigments produce the yellow and red colors of birds and other vertebrates. Despite their importance in social signaling and sexual selection, our understanding of how carotenoid ornamentation evolves in nature remains limited. Here, we examine the long-tailed finch Poephila acuticauda, an Australian songbird with a yellow-billed western subspecies acuticauda and a red-billed eastern subspecies hecki, which hybridize where their ranges overlap.

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Since the inception of the field of evolution, mimicry has yielded insights into foundational evolutionary processes, including adaptive peak shifts, speciation, and the emergence and maintenance of phenotypic polymorphisms. In recent years, the coevolutionary processes generating mimicry have gained increasing attention from researchers. Despite significant advances in understanding Batesian and Müllerian mimicry in Lepidopteran systems, few other mimetic systems have received similar detailed research.

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Archaeogenomic analysis of Chesapeake Atlantic sturgeon illustrates shaping of its populations in recovery from severe overexploitation.

Proc Biol Sci

October 2024

Department of Anthropology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20560, USA.

Atlantic sturgeon ( ssp. ) has been a food resource in North America for millennia. However, industrial-scale fishing activities following the establishment of European colonies led to multiple collapses of sturgeon stocks, driving populations such as those in the Chesapeake area close to extinction.

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Article Synopsis
  • The text discusses the debate on whether the ancestral reproductive mode of amniotes (including squamates like snakes and lizards) was oviparity (egg-laying) or viviparity (live-birth), emphasizing the importance of genomic transitions between these modes for understanding amniote evolution.
  • It reviews five key biological processes—eggshell formation, embryonic retention, placentation, calcium transport, and maternal-fetal immune dynamics—that may change during these transitions, proposing testable hypotheses about parity mode evolution in these species.
  • Additionally, the author introduces the nucleation site hypothesis as a potential early explanation for viviparity in lepidosaurs and offers a unifying framework that contrasts existing models of amni
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Most of our understanding of the fundamental processes of mutation and recombination stems from a handful of disparate model organisms and pedigree studies of mammals, with little known about other vertebrates. To gain a broader comparative perspective, we focused on the zebra finch (), which, like other birds, differs from mammals in its karyotype (which includes many micro-chromosomes), in the mechanism by which recombination is directed to the genome, and in aspects of ontogenesis. We collected genome sequences from three generation pedigrees that provide information about 80 meioses, inferring 202 single-point mutations, 1,174 crossovers, and 275 non-crossovers.

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Comparative neuroanatomical studies have long debated the role of development in the evolution of novel and disparate brain morphologies. Historically, these studies have emphasized whether evolutionary shifts along conserved or distinct developmental allometric trends cause changes in brain morphologies. However, the degree to which interspecific differences between variably sized taxa originate through modifying developmental allometry remains largely untested.

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Article Synopsis
  • Pteronarcys californica, also known as the giant salmonfly, is the largest stonefly species in the western U.S., but its populations have significantly declined and are locally extinct in many rivers, especially in Utah, Colorado, and Montana.
  • Previous studies have looked at ecological conditions for its survival, but there's a gap in genetic research due to limited genomic resources.
  • This study presents a new, comprehensive genome assembly for P. californica, showcasing a large genome size of 2.40 gigabases and highlighting significant multi-species genomic variations and trends that could aid in understanding the species' genetics and conservation.
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Frontal size variation is comparatively poorly sampled among sub-Saharan African populations. This study assessed frontal sinus size in a sample of Khoe-San skeletal remains from South African Later Stone Age contexts. Volumes were determined from CT scans of 102 adult crania; individual sex could be estimated in 82 cases.

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Integrating Phylogenies with Chronology to Assemble the Tree of Life.

bioRxiv

July 2024

Institute for Genomics and Evolutionary Medicine, Temple University, Philadelphia, PA.

Reconstructing the global Tree of Life necessitates computational approaches to integrate numerous molecular phylogenies with limited species overlap into a comprehensive supertree. Our survey of published literature shows that individual phylogenies are frequently restricted to specific taxonomic groups due to the expertise of investigators and molecular evolutionary considerations, resulting in any given species present in a minuscule fraction of phylogenies. We present a novel approach, called the chronological supertree algorithm (Chrono-STA), that can build a supertree of species from such data by using node ages in published molecular phylogenies scaled to time.

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Publisher Correction: Gene expression supports a single origin of horns and antlers in hoofed mammals.

Commun Biol

June 2024

Division of Paleontology, American Museum of Natural History, Central Park West at 79th Street, New York, NY, 10024, USA.

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Gene expression supports a single origin of horns and antlers in hoofed mammals.

Commun Biol

May 2024

Division of Paleontology, American Museum of Natural History, Central Park West at 79th Street, New York, NY, 10024, USA.

Article Synopsis
  • The study investigates the evolutionary relationships between horns and antlers in ruminant artiodactyls, emphasizing the challenge of assessing their morphological homology due to variable integument coverings.
  • Researchers analyzed juvenile cattle horn bud transcriptomes compared to deer antlers and pig tissues to determine if they share similar gene expression patterns, treating the coverings as a secondary feature.
  • Findings revealed genes that support the homology of horns and antlers, suggest a common origin from cranial neural crest cells, and provide insights into the timing of their differentiation.
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Understanding genetic incompatibilities and genetic introgression between incipient species are major goals in evolutionary biology. Mitochondrial genes evolve rapidly and exist in dense gene networks with coevolved nuclear genes, suggesting that mitochondrial respiration may be particularly susceptible to disruption in hybrid organisms. Mitonuclear interactions have been demonstrated to contribute to hybrid dysfunction between deeply divergent taxa crossed in the laboratory, but there are few empirical examples of mitonuclear interactions between younger lineages that naturally hybridize.

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Article Synopsis
  • * The study combines genomic, morphological, paleontological, and geographical data to construct a detailed evolutionary tree for Tetraopes, revealing their species diversification and colonization patterns across America.
  • * Findings indicate that Tetraopes originated in Central America around 21 million years ago and underwent significant diversification due to geological events, with later colonization of North America likely aided by land bridges during the Late Miocene to early Pleistocene.
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The history of Coast Salish "woolly dogs" revealed by ancient genomics and Indigenous Knowledge.

Science

December 2023

Department of Anthropology, National Museum of Natural History, Smithsonian Institution, Washington, DC, USA.

Ancestral Coast Salish societies in the Pacific Northwest kept long-haired "woolly dogs" that were bred and cared for over millennia. However, the dog wool-weaving tradition declined during the 19th century, and the population was lost. In this study, we analyzed genomic and isotopic data from a preserved woolly dog pelt from "Mutton," collected in 1859.

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The reconstructed cranium of and the evolution of the great ape face.

Proc Natl Acad Sci U S A

October 2023

Division of Anthropology, American Museum of Natural History, New York, NY 10024.

(~12 million years ago, northeastern Spain) is key to understanding the mosaic nature of hominid (great ape and human) evolution. Notably, its skeleton indicates that an orthograde (upright) body plan preceded suspensory adaptations in hominid evolution. However, there is ongoing debate about this species, partly because the sole known cranium, preserving a nearly complete face, suffers from taphonomic damage.

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Implications of outgroup selection in the phylogenetic inference of hominoids and fossil hominins.

J Hum Evol

November 2023

Division of Anthropology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024-5192, USA; Department of Anthropology, Stony Brook University, Stony Brook, NY 11794-4364, USA; Turkana Basin Institute, Stony Brook University, Stony Brook, NY 11794-4364, USA. Electronic address:

Understanding the phylogenetic relationships among hominins and other hominoid species is critical to the study of human origins. However, phylogenetic inferences are dependent on both the character data and taxon sampling used. Previous studies of hominin phylogenetics have used Papio and Colobus as outgroups in their analyses; however, these extant monkeys possess many derived traits that may confound the polarities of morphological changes among living apes and hominins.

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Stepwise emergence of the neuronal gene expression program in early animal evolution.

Cell

October 2023

Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain; Universitat Pompeu Fabra (UPF), Barcelona, Spain; ICREA, Barcelona, Spain. Electronic address:

The assembly of the neuronal and other major cell type programs occurred early in animal evolution. We can reconstruct this process by studying non-bilaterians like placozoans. These small disc-shaped animals not only have nine morphologically described cell types and no neurons but also show coordinated behaviors triggered by peptide-secreting cells.

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Quantifying Catalysis at the Origin of Life.

Chemistry

September 2023

Department of Chemistry, College of the Atlantic, 105 Eden Street, Bar Harbor, Maine, 04609, USA.

The construction of hypothetical environments to produce organic molecules such as metabolic intermediates or amino acids is the subject of ongoing research into the emergence of life. Experiments specifically focused on an anabolic approach typically rely on a mineral catalyst to facilitate the supply of organics that may have produced prebiotic building blocks for life. Alternatively to a true catalytic system, a mineral could be sacrificially oxidized in the production of organics, necessitating the emergent 'life' to turn to virgin materials for each iteration of metabolic processes.

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On seven undescribed leaf insect species revealed within the recent "Tree of Leaves" (Phasmatodea, Phylliidae).

Zookeys

August 2023

Department of Animal Evolution and Biodiversity, Johann- Friedrich-Blumenbach Institute of Zoology and Anthropology, University of Göttingen, Untere Karspüle 2, 37073, Göttingen, Germany University of Göttingen Göttingen Germany.

With the recent advance in molecular phylogenetics focused on the leaf insects (Phasmatodea, Phylliidae), gaps in knowledge are beginning to be filled. Yet, shortcomings are also being highlighted, for instance, the unveiling of numerous undescribed phylliid species. Here, some of these taxa are described, including from Mindoro Island, Philippines; from Samar Island, Philippines; from Mindanao Island, Philippines; from Vietnam; from South Kalimantan, Indonesia; and from Java, Indonesia.

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The phylogenomic and biogeographic history of the gartersnakes, watersnakes, and allies (Natricidae: Thamnophiini).

Mol Phylogenet Evol

September 2023

Department of Herpetology, American Museum of Natural History, New York, NY, USA.

North American Thamnophiini (gartersnakes, watersnakes, brownsnakes, and swampsnakes) are an ecologically and phenotypically diverse temperate clade of snakes representing 61 species across 10 genera. In this study, we estimate phylogenetic trees using ∼3,700 ultraconserved elements (UCEs) for 76 specimens representing 75% of all Thamnophiini species. We infer phylogenies using multispecies coalescent methods and time calibrate them using the fossil record.

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