Molecular Characterization of a Novel Rubodvirus Infecting Raspberries.

A novel negative-sense single-stranded RNA virus showing genetic similarity to viruses of the genus has been found in raspberry plants in the Czech Republic and has tentatively been named raspberry rubodvirus 1 (RaRV1). Phylogenetic analysis confirmed its clustering within the group, albeit distantly related to other members. A screening of 679 plant and 168 arthropod samples from the Czech Republic and Norway revealed RaRV1 in 10 raspberry shrubs, one batch of , and one individual of .

Current methods for monitoring Pseudomonas syringae biofilm development.

This work reviews biofilm investigation techniques and highlights the benefits and drawbacks of each approach focusing especially on Pseudomonas syringae and may serve as a comprehensive guide for any early-career researchers starting with the topic of biofilm. Each approach with applications of individual microscopy and spectroscopy techniques is summarized together with characterization of Pseudomonas syringae and its role in pathogenesis.

Molecular Characterization of a Novel Infecting Raspberry.

Raspberry plants, valued for their fruits, are vulnerable to a range of viruses that adversely affect their yield and quality. Utilizing high-throughput sequencing (HTS), we identified a novel virus, tentatively named raspberry enamovirus 1 (RaEV1), in three distinct raspberry plants. This study provides a comprehensive characterization of RaEV1, focusing on its genomic structure, phylogeny, and possible transmission routes.

Clarithromycin Suppresses Apple Proliferation Phytoplasma in Explant Cultures.

Apple proliferation, caused by ' Phytoplasma mali', is one of the most important economic threats in the field of apple production. Especially at a young age, infected trees can be affected by excessive bud proliferation and general decline. The fruit quality is also significantly reduced by this disease.

Lethal and behavioural toxicity of differently aged insecticide residues on European earwigs (Forficula auricularia) in the laboratory and in the field.

Pesticide residues are an important topic in many environmental studies, but little is known about the effects of pesticide residues of different ages on beneficial arthropods. Therefore, in this study the activity of residues of three different ages of several commonly used insecticides on the behaviour and mortality of European earwigs was evaluated in the laboratory and the effect of the insecticides was verified in the field. All residues of the biorational SpinTor® (spinosad), Radiant SC (spinetoram), and the conventional Steward® (indoxacarb) showed significantly faster mortality progression compared to the control in the laboratory.

Low concentrations of acetamiprid, deltamethrin, and sulfoxaflor, three commonly used insecticides, adversely affect ant queen survival and egg laying.

Ants are key ecosystem service providers and can serve as important biological control agents in pest management. However, the effects of insecticides on common farmland ant species are poorly understood. We tested the effects of three commonly used insecticides on ants (Hymenoptera, Formicidae).

Effect of spring nitrogen fertilization on bearing and branching behaviors of young apple trees.

The total aboveground biomass production, nutritional status, bearing and branching behaviors of the central leader and one year old shoots of young apple trees have been analyzed. The shoots were further characterized according to the length, shoot demography, and the production of terminal and lateral flowers. All the characteristics are described in connection with nitrogen supply and cultivar.

A New One-Tube Reaction Assay for the Universal Determination of Sweet Cherry ( L.) Self-(In)Compatible MGST- and S-Alleles Using Capillary Fragment Analysis.

The sweet cherry plant ( L.) is primarily self-incompatible, with so-called S-alleles responsible for the inability of flowers to be pollinated not only by their own pollen grains but also by pollen from other cherries having the same S-alleles. This characteristic has wide-ranging impacts on commercial growing, harvesting, and breeding.

High-resolution genome-wide association study of a large Czech collection of sweet cherry ( L.) on fruit maturity and quality traits.

In sweet cherry ( L.), quantitative trait loci have been identified for fruit maturity, colour, firmness, and size to develop markers for marker-assisted selection. However, resolution is usually too low in those analyses to directly target candidate genes, and some associations are missed.

Effect of storage conditions on content of pesticide residues in sweet cherries.

Dynamics of pesticides decomposition in sweet cherry fruits at different technologies of long-term storage, ultra-low oxygen and modified atmosphere packing, and after post-harvesting application of 1-methylcyclopropen and ozone has been studied. We assumed that type of pesticide and fruit storage conditions may have a profound effect on pesticide residues content. Therefore, levels of residues after applying combinations of active ingredients including acetamiprid, boscalid, cyprodinil, fenhexamid, fenpyrazamine, fludioxonil, fluopyram, pyraclostrobin, pirimicarb, tebuconazole, thiacloprid, and trifloxystrobin were monitored.

High Incidence of Strawberry Polerovirus 1 in the Czech Republic and Its Vectors, Genetic Variability and Recombination.

In total, 332 strawberry plants from 33 different locations in the Czech Republic with or without disease symptoms were screened by RT-PCR for the presence of strawberry polerovirus 1 (SPV1) and five other viruses: strawberry mottle virus, strawberry crinkle virus, strawberry mild yellow edge virus, strawberry vein banding virus, and strawberry virus 1. SPV1 was detected in 115 tested strawberry plants (35%), including 89 mixed infections. No correlation between symptoms and the detected viruses was found.

SSR-Based Analysis of Genetic Diversity and Structure of Sweet Cherry ( L.) from 19 Countries in Europe.

Sweet cherry ( L.) is a temperate fruit species whose production might be highly impacted by climate change in the near future. Diversity of plant material could be an option to mitigate these climate risks by enabling producers to have new cultivars well adapted to new environmental conditions.

Benefits and Pitfalls of HPLC Coupled to Diode-Array, Charged Aerosol, and Coulometric Detections: Effect of Detection on Screening of Bioactive Compounds in Apples.

The new screening method for rapid evaluation of major phenolic compounds in apples has been developed. Suitability of coupling HPLC/UHPLC separation with the diode-array detection and universal charged aerosol detection with respect to the presence of interfering substances was tested. Characteristics of both detection techniques were compared and method linearity, limits of detection and quantitation, and selectivity of them determined.

Forficula auricularia (Dermaptera) in orchards: Monitoring seasonal activity, the effect of pesticides, and the perception of European fruit growers on its role as a predator or pest.

Background: We investigated several aspects that could affect the role of the European earwig (Forficula auricularia) as a generalist predator in orchards: (i) seasonal activity in apple orchards, (ii) effectiveness of two cardboard trap types (roll vs tape) to enhance earwig densities, (iii) the effect of pesticides (chlorpyrifos-methyl, spinosad, indoxacarb, spirotetramat, pirimicarb, sulphur, fluopyram tebuconazole) on earwig survival and behaviour, and (iv) the perception of European fruit growers of the earwigs' role as a predator or pest.

Results: The highest activity of earwigs in apple trees was observed in summer. Roll traps were a more effective capture method than tape traps.

Modelling the bearing and branching behaviors of 1-year-old shoots in apricot genotypes.

In most temperate fruit trees, fruits are located on one-year old shoots. In Prunus species, flowers and fruits are born in axillary position along those shoots. The axillary bud fate and branching patterns are thus key components of the cultivar potential fruit production.

Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm.

Background: Apple (Malus x domestica Borkh.) is one of the most important fruit tree crops of temperate areas, with great economic and cultural value. Apple cultivars can be maintained for centuries in plant collections through grafting, and some are thought to date as far back as Roman times.

Micropropagation of Rosaceous Species SAM Grown in Temperate Climate.

The benefits of in vitro plant cultivation are mainly due to very high multiplication rate. Cultivation of plant material in vitro can be carried out during the whole year regardless of the time of the year or weather conditions. We create artificial conditions in the lab (heat, light, humidity), and we can regulate these conditions at any time.

Synergistic effects of glyphosate formulation herbicide and tank-mixing adjuvants on Pardosa spiders.

Glyphosate-based herbicides are the world's most consumed agrochemicals, and they are commonly used in various agroecosystems, including forests, as well as in urban zones and gardens. These herbicides are sold as formulations containing adjuvants. Other tank-mixing adjuvants (most often surfactants) are commonly added to these formulations prior to application.

High-Throughput Sequencing Analysis of the Bacterial Community in Stone Fruit Phloem Tissues Infected by "Candidatus Phytoplasma prunorum".

"Candidatus Phytoplasma prunorum" (CPp) is a highly destructive phytopathogenic agent in many stone fruit-growing regions in Europe and the surrounding countries. In this work, we focused on documenting entire bacterial community in the phloem tissues of 60 stone fruit trees. Nested PCR and two real-time PCR assays were used to select CPp-positive (group A) and CPp-negative samples (group B).

Determination of major phenolic compounds in apples: Part I-Optimization of high-performance liquid chromatography separation with diode array detection.

The separation of seven phenolic compounds including gallic acid, chlorogenic acid, epicatechin, quercitrin, rutin, phloridzin, and phloretin present in apple peel and pulp and differing in elution properties has been optimized using high-performance liquid chromatography with diode array detection. Several stationary phases were tested to achieve the efficient separation of phenolic compounds in fruit extracts and C18 was found to be the most efficient. Core-shell and fully porous C18 packings were assessed with respect to the complex composition of the fruit extracts.

Genome-Wide Association Mapping of Flowering and Ripening Periods in Apple.

Deciphering the genetic control of flowering and ripening periods in apple is essential for breeding cultivars adapted to their growing environments. We implemented a large Genome-Wide Association Study (GWAS) at the European level using an association panel of 1,168 different apple genotypes distributed over six locations and phenotyped for these phenological traits. The panel was genotyped at a high-density of SNPs using the Axiom®Apple 480 K SNP array.

Effect of variety on content of bioactive phenolic compounds in common elder (Sambucus nigra L.).

The inflorescence of common elder (Sambucus nigra L., Adoxaceae) is known to be rich in phenolic compounds. The content of five selected phenolic compounds (rutin, chlorogenic acid, isoquercitrin, isorhamnetin-3-O- rutinoside and dicaffeoylquinic acid) was determined in methanolic extracts from flowers and floral stems by HPLC in samples obtained from 20 varieties of S.