93 results match your criteria: "Quantum Beam Science Center[Affiliation]"
Int J Radiat Biol
December 2017
a Centre for Cancer Research and Cell Biology , Queen's University Belfast, Belfast , UK.
Purpose: To discuss low-dose radiation-induced risks to male fertility focusing on potential mechanisms of low-dose radiation-induced damage on spermatogenesis, epidemiological studies of environmental radiation effects on sperm parameters and transgenerational effects following exposure of spermatogonial stem cells (SSCs).
Background: Spermatogenesis produces mature male gametes, spermatozoa, which fertilize their counterpart female gametes, oocytes. The robust maintenance system of spermatogenesis is essential for genomic conservation; however, male fertility can be readily impacted by exposure to environmental, chemical and physical factors including ionizing radiation.
Protein Sci
October 2017
Quantum Beam Science Center, Japan Atomic Energy Agency, Tokai, Ibaraki, 319-1195, Japan.
T4 phage lysozyme is an inverting glycoside hydrolase that degrades the murein of bacterial cell walls by cleaving the β-1,4-glycosidic bond. The substitution of the catalytic Thr26 residue to a histidine converts the wild type from an inverting to a retaining enzyme, which implies that the original general acid Glu11 can also act as an acid/base catalyst in the hydrolysis. Here, we have determined the neutron structure of the perdeuterated T26H mutant to clarify the protonation states of Glu11 and the substituted His26, which are key in the retaining reaction.
View Article and Find Full Text PDFSci Adv
June 2017
RIKEN Center for Emergent Matter Science, Saitama 351-0198, Japan.
Magnetic skyrmions exhibit particle-like properties owing to the topology of their swirling spin texture, providing opportunities to study crystallization of topological particles. However, they mostly end up with a triangular lattice, and thus, the packing degree of freedom in the skyrmion particles has been overlooked so far. We report a structural transition of the skyrmion lattice in MnSi.
View Article and Find Full Text PDFTohoku J Exp Med
May 2017
Centre for Cancer Research and Cell Biology, Queen's University Belfast.
On March 11, 2011, a devastating earthquake and subsequent tsunami caused serious damage to areas of the Pacific coast in Fukushima prefecture and prompted fears among the residents about a possible meltdown of the Fukushima Daiichi Nuclear Power Plant reactors. As of 2017, over six years have passed since the Fukushima nuclear crisis and yet the full ramifications of the biological exposures to this accidental release of radioactive substances remain unclear. Furthermore, although several genetic studies have determined that the variation in radiation sensitivity among different individuals is wider than expected, personalized medical approaches for Fukushima victims have seemed to be insufficient.
View Article and Find Full Text PDFInt J Radiat Biol
March 2017
a Department of Environmental Sciences, Faculty of Science , Ibaraki University, Mito , Ibaraki , Japan.
Purpose: To clarify whether initial base excision repair processes at clustered DNA damage sites comprising multiple base lesions affect subsequent excision processes via the formation of additional strand breaks by glycosylase and apurinic/apyrimidinic (AP) endonuclease base excision enzymes.
Materials And Methods: Plasmid DNA (pUC18) as a model DNA molecule was exposed to high-linear-energy-transfer (LET) ionizing radiation (Heor Cions) or low-LET ionizing radiation (X-rays) under various conditions to produce varied radical-scavenging effects. pUC18 was then treated sequentially or simultaneously with two bacterial base excision enzymes (glycosylases), namely, endonuclease III and formamidopyrimidine-DNA glycosylase, which convert pyrimidine (or abasic [AP] site) and purine (or AP site) lesions to single-strand breaks (SSB), respectively.
Phys Rev Lett
September 2016
Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
In recent measurements of the scissors mode in radiative decay experiments, transition strengths were observed that were double that expected from theory and systematics well established from measurements on the radiative excitation channel, that is, using nuclear resonance fluorescence (NRF). Additional strength as measured with NRF can only be present as heretofore unobserved branching or fragmentation of the scissors mode. Such possibilities were investigated in a transmission NRF measurement on the deformed, odd-mass ^{181}Ta, using a quasimonoenergetic γ-ray beam at two beam energies.
View Article and Find Full Text PDFInt J Radiat Oncol Biol Phys
October 2016
Department of Nuclear Medicine and Radiology, Institute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.
J Chem Phys
August 2016
Molecular Modeling and Simulation Group, National Institutes for Quantum and Radiological Science and Technology, 8-1-7 Umemidai, Kidugawa, Kyoto 619-0215, Japan.
Comparing two trajectories from molecular simulations conducted under different conditions is not a trivial task. In this study, we apply a method called Linear Discriminant Analysis with ITERative procedure (LDA-ITER) to compare two molecular simulation results by finding the appropriate projection vectors. Because LDA-ITER attempts to determine a projection such that the projections of the two trajectories do not overlap, the comparison does not suffer from a strong anisotropy, which is an issue in protein dynamics.
View Article and Find Full Text PDFInt J Radiat Biol
November 2016
a Graduate School of Science and Engineering, Ibaraki University, Mito , Ibaraki , Japan.
Purpose: To establish a new experimental technique to explore the photoelectric and subsequent Auger effects on the cell cycles of soft X-ray microbeam-irradiated cells and unirradiated bystander cells in a single colony.
Materials And Methods: Several cells located in the center of a microcolony of HeLa-Fucci cells consisting of 20-80 cells were irradiated with soft X-ray (5.35 keV) microbeam using synchrotron radiation as a light source.
Microscopy (Oxf)
October 2016
Quantum Beam Science Center and Fukushima Environmental Safety Center, Japan Atomic Energy Agency, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Microparticles of radioactive cesium (Cs)-bearing silicate glass emitted from the Fukushima Daiichi nuclear power plant were investigated mainly using state-of-the-art energy-dispersive X-ray spectroscopy in scanning transmission electron microscopes. Precise elemental maps of the particles were obtained using double silicon drift detectors with a large collection angle of X-rays, and qualitative elemental analysis was performed using high-resolution X-ray spectroscopy with a microcalorimetry detector. Beside the substantial elements (O, Si, Cl, K, Fe, Zn, Rb, Sn and Cs) as previously reported, Mn and Ba were also common, though their amounts were small.
View Article and Find Full Text PDFBiophys J
July 2016
Quantum Beam Science Center, Japan Atomic Energy Agency, Ibaraki, Japan; Graduate School of Science and Engineering, Ibaraki University, Ibaraki, Japan.
Using synchrotron radiation-based circular dichroism spectroscopy, we found that the DNA damage response induces an increase of α-helix structure and a decrease of β-strand and turn structures in histone H2A-H2B extracted from x-irradiated human HeLa cells. The structural alterations correspond to the assumption that an average of eight amino acid residues form new α-helix structures at 310 K. We propose the structural transition from β-strand and turn structures to an α-helix structure in H2A-H2B as a novel, to our knowledge, process involved in the DNA damage response.
View Article and Find Full Text PDFInt J Radiat Biol
November 2016
b Quantum Beam Science Center, Japan Atomic Energy Agency , Tokai , Naka , Ibaraki , Japan.
Purpose: To simulate the deceleration processes of secondary electrons produced by a high-energy Auger electron in water, and particularly to focus on the spatial and temporal distributions of the secondary electron and the collision events (e.g. ionization, electronic excitation, and dissociative electron attachment) that are involved in the multiplication of lesions at sites of DNA damage.
View Article and Find Full Text PDFInt J Radiat Biol
November 2016
c Photon Factory , Institute of Material Structure Sciences, High Energy Accelerator Research Organization (KEK) , Tsukuba , Ibaraki.
Purpose: To investigate an enhancement of DNA double-strand break (DSB) induction and cell killing effect by K-shell ionization of phosphorus atoms and Auger electrons on human cell lines.
Materials And Methods: Induction of DSB, DNA damage responses, cell cycle distributions, and cell killing effects were investigated after exposures of the cells with monochromatic synchrotron radiation soft X-rays of 2153 and 2147 eV, which were the resonance peak and off peak, respectively, of the K-shell photoabsorption of phosphorus.
Results: Higher biological effects in the cells irradiated with soft X-rays at 2153 eV than at 2147 eV were observed in (i) the efficiency of 53BP1/γ-H2AX co-localized foci formation per dose and residual number of foci, (ii) prolonged phosphorylation levels of DSB repair and/or cell cycle checkpoint related proteins and G2 arrest, (iii) the cell killing effects at the 10% survival level of normal human fibroblasts, HeLa cells, and human glioblastoma M059K cells (1.
ACS Cent Sci
April 2016
Department of Chemistry and Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States; Department of Chemistry and Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States; Chemical Sciences Division, Materials Sciences Division, and Advanced Light Source, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.
Porous aromatic frameworks (PAFs) incorporating a high concentration of acid functional groups possess characteristics that are promising for use in separating lanthanide and actinide metal ions, as required in the treatment of radioactive waste. These materials have been shown to be indefinitely stable to concentrated acids and bases, potentially allowing for multiple adsorption/stripping cycles. Additionally, the PAFs combine exceptional features from MOFs and inorganic/activated carbons giving rise to tunable pore surfaces and maximum chemical stability.
View Article and Find Full Text PDFBiochem Biophys Rep
July 2016
Quantum Beam Science Center, Japan Atomic Energy Agency, Tokai, Ibaraki 319-1195, Japan.
Hydration water is essential for a protein to perform its biological function properly. In this study, the dynamics of hydration water around F-actin and myosin subfragment-1 (S1), which are the partner proteins playing a major role in various cellular functions related to cell motility including muscle contraction, was characterized by incoherent quasielastic neutron scattering (QENS). The QENS measurements on the DO- and HO-solution samples of F-actin and S1 provided the spectra of hydration water, from which the translational diffusion coefficient (D), the residence time (τ), and the rotational correlation time (τ) were evaluated.
View Article and Find Full Text PDFPLoS One
August 2016
Department of Neurology, Osaka University Graduate School of Medicine, Suita, Osaka, Japan.
α-synuclein (αSyn) is a protein consisting of 140 amino acid residues and is abundant in the presynaptic nerve terminals in the brain. Although its precise function is unknown, the filamentous aggregates (amyloid fibrils) of αSyn have been shown to be involved in the pathogenesis of Parkinson's disease, which is a progressive neurodegenerative disorder. To understand the pathogenesis mechanism of this disease, the mechanism of the amyloid fibril formation of αSyn must be elucidated.
View Article and Find Full Text PDFData Brief
June 2016
Jülich Centre for Neutron Science & Institute for Complex Systems, Forschungszentrum Jülich GmbH, D-52425 Jülich, Germany.
In this article, we show the small-angle neutron scattering (SANS) data obtained from the polymer electrolyte membranes (PEMs) equilibrated at a given relative humidity. We apply Hard-Sphere (HS) structure model with Percus-Yervick interference interactions to analyze the dataset. The molecular structure of these PEMs and the morphologies of the fully water-swollen membranes have been elucidated by Zhao et al.
View Article and Find Full Text PDFSci Rep
March 2016
Department of Electrical Engineering and Information Systems, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8656, Japan.
We investigate the local electronic structure and magnetic properties of the group-IV-based ferromagnetic semiconductor, Ge(1-x)Fex (GeFe), using soft X-ray magnetic circular dichroism. Our results show that the doped Fe 3d electrons are strongly hybridized with the Ge 4p states, and have a large orbital magnetic moment relative to the spin magnetic moment; i.e.
View Article and Find Full Text PDFActa Crystallogr D Struct Biol
January 2016
Quantum Beam Science Center, Japan Atomic Energy Agency, 2-4 Shirakata-Shirane, Tokai, Naka, Ibaraki, Japan.
A difference in the neutron scattering length between hydrogen and deuterium leads to a high density contrast in neutron Fourier maps. In this study, a technique for determining the deuterium/hydrogen (D/H) contrast map in neutron macromolecular crystallography is developed and evaluated using ribonuclease A. The contrast map between the D2O-solvent and H2O-solvent crystals is calculated in real space, rather than in reciprocal space as performed in previous neutron D/H contrast crystallography.
View Article and Find Full Text PDFGenome Announc
February 2016
Graduate School of Life Sciences, Toyo University, Itakura, Gunma, Japan Faculty of Life Sciences, Toyo University, Itakura, Gunma, Japan.
Deinococcus grandis is a radioresistant bacterium isolated from freshwater fish in Japan. Here we reported the draft genome sequence of D. grandis (4.
View Article and Find Full Text PDFSci Rep
February 2016
Graduate School of Sciences, The University of Tokyo, Bunkyo, Tokyo 113-0033, Japan.
Cesium adsorption/desorption experiments for various clay minerals, considering actual contamination conditions in Fukushima, were conducted using the (137)Cs radioisotope and an autoradiography using imaging plates (IPs). A 50 μl solution containing 0.185 ~ 1.
View Article and Find Full Text PDFExtremophiles
March 2016
Molecular Biology Division, Bhabha Atomic Research Centre, Mumbai, 400084, India.
The multipartite genome of Deinococcus radiodurans forms toroidal structure. It encodes topoisomerase IB and both the subunits of DNA gyrase (DrGyr) while lacks other bacterial topoisomerases. Recently, PprA a pleiotropic protein involved in radiation resistance in D.
View Article and Find Full Text PDFSci Rep
January 2016
Laser Processing Research Group, Quantum Beam Science Center, Japan Atomic Energy Agency (JAEA), Tokai-mura, Ibaraki-ken 319-1195, Japan.
Cesium (Cs) removal from nuclear liquid wastewater has become an emerging issue for safeguarding public health after the accident at the Fukushima Daiichi Nuclear Power Plant. A novel macrocyclic ligand of o-benzo-p-xylyl-22-crown-6-ether (OBPX22C6) was developed and successfully immobilized onto mesoporous silica for the preparation of hybrid adsorbent. The benzene ring π electron is the part of crown ether of OBPX22C6 for easy orientation of the macrocyclic compound for making the π electron donation with Cs complexation.
View Article and Find Full Text PDFJ Chromatogr A
January 2016
Department of Applied Chemistry, Chubu University, 1200, Matsumoto-cho, Kasugai-shi, Aichi 487-8501, Japan.
Selective separation and sensitive detection of dissolved silicon and boron (DSi and DB) in aqueous solution was achieved by combining an electrodialytic ion isolation device (EID) as a salt remover, an ion-exclusion chromatography (IEC) column, and a corona charged aerosol detector (CCAD) in sequence. DSi and DB were separated by IEC on the H(+)-form of a cation exchange resin column using pure water eluent. DSi and DB were detected after IEC separation by the CCAD with much greater sensitivity than by conductimetric detection.
View Article and Find Full Text PDFBiomacromolecules
February 2016
Department of Chemical and Biomolecular Engineering, University of Delaware, 150 Academy Street, Newark, Delaware 19716 United States.
Polymer-based gene delivery vehicles benefit from the presence of hydrophilic groups that mitigate the inherent toxicity of polycations and that provide tunable polymer-DNA binding strength and stable complexes (polyplexes). However, hydrophilic groups screen charge, and as such can reduce cell uptake and transfection efficiency. We report the effect of embedding zwitterionic sulfobetaine (SB) groups in cationic comb polymers, using a combination of experiments and molecular simulations.
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