28 results match your criteria: "Poznan Supercomputing and Networking Center[Affiliation]"
Sci Data
January 2025
Department of Psychology, Stanford University, Stanford, USA.
Esports refers to competitive video gaming where individuals compete against each other in organized tournaments for prize money. Here, we present the Competitive Esports Physiological, Affective, and Video (CEPAV) dataset, in which 300 male Counter Strike: Global Offensive gamers participated in a study aimed at optimizing affect during esports tournament. The CEPAV dataset includes (1) physiological data, capturing the player's cardiovascular responses from before, during, and after over 3000 CS: GO matches; (2) self-reported affective data, detailing the affective states experienced before gameplay; and (3) video data, providing a visual record of 552 in-laboratory gaming sessions.
View Article and Find Full Text PDFPol Przegl Chir
April 2024
Department of General, Endocrine and Gastroenterological Oncology Surgery, Poznan University of Medical Sciences, Poland.
<b>Introduction:</b> Computer-based interactive techniques are becoming an important tool in medical education. One of the important benefits of the use of telemedicine in surgical training is the reduction of the number of people in the operating room. As shown in the studies, this can lead i.
View Article and Find Full Text PDFEur Heart J Cardiovasc Imaging
September 2024
British Heart Foundation Centre for Cardiovascular Science, University of Edinburgh, 47 Little France Crescent, Edinburgh EH16 4TJ, UK.
Aims: Transthoracic echocardiography is recommended in all patients with acute coronary syndrome but is time-consuming and lacks an evidence base. We aimed to assess the feasibility, diagnostic accuracy, and time efficiency of hand-held echocardiography in patients with acute coronary syndrome and describe the impact of echocardiography on clinical management in this setting.
Methods And Results: Patients with acute coronary syndrome underwent both hand-held and transthoracic echocardiographies with agreement between key imaging parameters assessed using kappa statistics.
Entropy (Basel)
January 2024
DLSIIS and Center for Computational Simulation, Universidad Politécnica de Madrid, 28660 Madrid, Spain.
Quantum-key-distribution (QKD) networks are gaining importance and it has become necessary to analyze the most appropriate methods for their long-distance interconnection. In this paper, four different methods of interconnecting remote QKD networks are proposed. The methods are used to link three different QKD testbeds in Europe, located in Berlin, Madrid, and Poznan.
View Article and Find Full Text PDFSci Rep
August 2023
Joint Laboratory of Optics of Palacký University and Institute of Physics of Czech Academy of Sciences, 17, Listopadu 12, 771 46, Olomouc, Czech Republic.
We introduce a new approach towards generative quantum machine learning significantly reducing the number of hyperparameters and report on a proof-of-principle experiment demonstrating our approach. Our proposal depends on collaboration between the generators and discriminator, thus, we call it quantum synergic generative learning. We present numerical evidence that the synergic approach, in some cases, compares favorably to recently proposed quantum generative adversarial learning.
View Article and Find Full Text PDFJ Intellect Dev Disabil
June 2023
Department of Children's Rehabilitation, Lithuanian University of Health Sciences, Kaunas, Lithuania.
Background: The COVID-19 pandemic has affected education at all levels in various ways. This paper provides a review of the literature on the challenges of online learning for children with special educational needs and disabilities (SEND).
Method: In total, 17 studies from nine countries were analysed.
Otolaryngol Pol
August 2022
Department of Otolaryngology, Head and Neck Surgery, Poznan University of Medical Sciences, Poland.
The pioneering nature of this work covers the answers to two questions: (1) Is an up-to-date anatomical model of the larynx needed for modern endoscopic diagnostics, and (2) can such a digital segmentation model be utilized for deep learning purposes. The idea presented in this article has never been proposed before, and this is a breakthrough in numerical approaches to aerodigestive videoendoscopy imaging. The approach described in this article assumes defining a process for data acquisition, integration, and segmentation (labeling), for the needs of a new branch of knowledge: digital medicine and digital diagnosis support expert systems.
View Article and Find Full Text PDFInt J Environ Res Public Health
September 2022
Department of Medical Chemistry and Laboratory Medicine, Poznan University of Medical Sciences, 60-806 Poznan, Poland.
Tonometry is commonly used to provide efficient and good diagnostics for cardiovascular disease (CVD). There are many advantages of this method, including low cost, non-invasiveness and little time to perform. In this study, the effort was undertaken to check whether tonometry data hides valuable information associated with different stages of chronic kidney disease (CKD) and end-stage renal disease (ESRD) treatment.
View Article and Find Full Text PDFBioinformatics
September 2022
Institute of Computing Science, Poznan University of Technology, 60-965 Poznan, Poland.
Antioxidants (Basel)
February 2022
Department of Medical Chemistry and Laboratory Medicine, Poznan University of Medical Sciences, 60-806 Poznan, Poland.
Patients with chronic kidney disease (CKD), especially those who are hemodialyzed (HD), are at significantly high risk of contracting cardiovascular disease and having increased mortality. This study aimed to find potential death predictors, the measurement of which may reflect increased mortality in HD patients, and then combine the most promising ones in frames of a simple death risk assessment model. For this purpose, HD patients (n=71) with acute myocardial infarction in the last year (HD group) and healthy people (control group) as a comparative group (n=32) were included in the study.
View Article and Find Full Text PDFSci Data
January 2022
Adam Mickiewicz University, Faculty of Psychology and Cognitive Science, Poznan, 61-664, Poland.
Subjective experience and physiological activity are fundamental components of emotion. There is an increasing interest in the link between experiential and physiological processes across different disciplines, e.g.
View Article and Find Full Text PDFSensors (Basel)
August 2021
Institute for High Performance Computing and Networking, National Research Council, 80131 Napoli, Italy.
The synergy between Artificial Intelligence and the Edge Computing paradigm promises to transfer decision-making processes to the periphery of sensor networks without the involvement of central data servers. For this reason, we recently witnessed an impetuous development of devices that integrate sensors and computing resources in a single board to process data directly on the collection place. Due to the particular context where they are used, the main feature of these boards is the reduced energy consumption, even if they do not exhibit absolute computing powers comparable to modern high-end CPUs.
View Article and Find Full Text PDFPhilos Trans A Math Phys Eng Sci
May 2021
Centre for Computational Science, University College London, London, UK.
We present the VECMA toolkit (VECMAtk), a flexible software environment for single and multiscale simulations that introduces directly applicable and reusable procedures for verification, validation (V&V), sensitivity analysis (SA) and uncertainty quantication (UQ). It enables users to verify key aspects of their applications, systematically compare and validate the simulation outputs against observational or benchmark data, and run simulations conveniently on any platform from the desktop to current multi-petascale computers. In this sequel to our paper on VECMAtk which we presented last year [1] we focus on a range of functional and performance improvements that we have introduced, cover newly introduced components, and applications examples from seven different domains such as conflict modelling and environmental sciences.
View Article and Find Full Text PDFNat Comput Sci
February 2021
Centre for Computational Science, University College London, London, UK.
Epidemiological modelling has assisted in identifying interventions that reduce the impact of COVID-19. The UK government relied, in part, on the CovidSim model to guide its policy to contain the rapid spread of the COVID-19 pandemic during March and April 2020; however, CovidSim contains several sources of uncertainty that affect the quality of its predictions: parametric uncertainty, model structure uncertainty and scenario uncertainty. Here we report on parametric sensitivity analysis and uncertainty quantification of the code.
View Article and Find Full Text PDFBMC Bioinformatics
January 2020
Institute of Computing Science and European Centre for Bioinformatics and Genomics, Poznan University of Technology, Piotrowo 2, Poznan, 60-965, Poland.
Bioinformatics
February 2020
Department of Structural Bioinformatics, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan 61-704, Poland.
Nature
April 2019
ASTRON, Netherlands Institute for Radio Astronomy, Dwingeloo, The Netherlands.
Lightning is a dangerous yet poorly understood natural phenomenon. Lightning forms a network of plasma channels propagating away from the initiation point with both positively and negatively charged ends-called positive and negative leaders. Negative leaders propagate in discrete steps, emitting copious radio pulses in the 30-300-megahertz frequency band that can be remotely sensed and imaged with high spatial and temporal resolution.
View Article and Find Full Text PDFPhilos Trans A Math Phys Eng Sci
April 2019
1 Max-Planck-Institut für Plasmaphysik , Garching , Germany.
The extreme scaling pattern of the ComPat project is applied to a multi-scale workflow relevant to the magnetically confined fusion problem. This workflow combines transport, turbulence and equilibrium codes (together with additional auxiliaries such as initial conditions and numerical module), which aims at calculating the behaviour of a fusion plasma on long (transport) time scales based on information from much faster (turbulence) time scales. Initial findings of profile measurements are reported in this paper and indicate that, depending on the chosen performance metric for defining 'cost', such as time to completion, efficiency and total energy consumption of the mutliscale workflow, different choices on the number of cores would be made when determining the optimal execution configuration.
View Article and Find Full Text PDFPhilos Trans A Math Phys Eng Sci
April 2019
2 Poznan Supercomputing and Networking Center , Institute of Bioorganic Chemistry of the Polish Academy of Sciences, ul Z. Noskowskiego 12/14 , 61-704 Poznan , Poland.
We describe a method for queue wait time prediction in supercomputing clusters. It was designed for use as a part of multi-criteria brokering mechanisms for resource selection in a multi-site High Performance Computing environment. The aim is to incorporate the time jobs stay queued in the scheduling system into the selection criteria.
View Article and Find Full Text PDFBMC Bioinformatics
August 2018
Institute of Computing Science & European Centre for Bioinformatics and Genomics, Poznan University of Technology, Piotrowo 2, 60-965, Poznan, Poland.
Background: Computational RNA 3D structure prediction and modeling are rising as complementary approaches to high-resolution experimental techniques for structure determination. They often apply to substitute or complement them. Recently, researchers' interests have directed towards in silico methods to fit, remodel and refine RNA tertiary structure models.
View Article and Find Full Text PDFPLoS One
February 2019
Institute of Computing Science, Poznań University of Technology, Poznań, Poland.
Next generation sequencers produce billions of short DNA sequences in a massively parallel manner, which causes a great computational challenge in accurately reconstructing a genome sequence de novo using these short sequences. Here, we propose the GRASShopPER assembler, which follows an approach of overlap-layout-consensus. It uses an efficient GPU implementation for the sequence alignment during the graph construction stage and a greedy hyper-heuristic algorithm at the fork detection stage.
View Article and Find Full Text PDFNucleic Acids Res
July 2018
Institute of Computing Science, and European Centre for Bioinformatics and Genomics, Poznan University of Technology, Piotrowo 2, 60-965 Poznan, Poland.
In the field of RNA structural biology and bioinformatics, an access to correctly annotated RNA structure is of crucial importance, especially in the secondary and 3D structure predictions. RNApdbee webserver, introduced in 2014, primarily aimed to address the problem of RNA secondary structure extraction from the PDB files. Its new version, RNApdbee 2.
View Article and Find Full Text PDFBioinformatics
April 2018
Institute of Computing Science, Poznan University of Technology, Poznan 60-965, Poland.
Motivation: Understanding the formation, architecture and roles of pseudoknots in RNA structures are one of the most difficult challenges in RNA computational biology and structural bioinformatics. Methods predicting pseudoknots typically perform this with poor accuracy, often despite experimental data incorporation. Existing bioinformatic approaches differ in terms of pseudoknots' recognition and revealing their nature.
View Article and Find Full Text PDFBMC Bioinformatics
October 2017
Institute of Computing Science & European Centre for Bioinformatics and Genomics, Poznan University of Technology, Piotrowo 2, 60-965, Poznan, Poland.
Background: In modern structural bioinformatics, comparison of molecular structures aimed to identify and assess similarities and differences between them is one of the most commonly performed procedures. It gives the basis for evaluation of in silico predicted models. It constitutes the preliminary step in searching for structural motifs.
View Article and Find Full Text PDFPlant Methods
November 2016
Institute of Plant Genetics, Polish Academy of Sciences, ul. Strzeszyńska 34, 60-479 Poznań, Poland.
Background: Plant phenotypic data shrouds a wealth of information which, when accurately analysed and linked to other data types, brings to light the knowledge about the mechanisms of life. As phenotyping is a field of research comprising manifold, diverse and time-consuming experiments, the findings can be fostered by reusing and combining existing datasets. Their correct interpretation, and thus replicability, comparability and interoperability, is possible provided that the collected observations are equipped with an adequate set of metadata.
View Article and Find Full Text PDF