49 results match your criteria: "Portuguese Institute for Sea and Atmosphere[Affiliation]"
Food Chem X
December 2024
OKEANOS- Research Unit- Faculty of Science and Technology, University of the Azores, 9901-862 Horta, Portugal.
Valorization of azorean demersal fish species must focus quality. This study aims to assess the nutritional value, sodium content and fat quality index of seven commercially relevant demersal fish species from the Azores Region: blackspot seabream (), blackbelly rosefish (), splendid alfonsino (), alfonsino (), forkbeard (), offshore rockfish () and common mora (). Moisture, ash, crude protein, total sugars, total fat, fatty acid profile, sodium and salt content were assessed.
View Article and Find Full Text PDFInt J Parasitol Parasites Wildl
December 2024
Univ. Bordeaux, CNRS, Bordeaux INP, EPOC, UMR, 5805, Station Marine d'Arcachon, Arcachon, France.
Identifying marine trematode parasites in host tissue can be complicated when there is limited morphological differentiation between species infecting the same host species. This poses a challenge for regular surveys of the parasite communities in species of socio-economic and ecological importance. Our study focused on identifying digenean trematode species infecting the marine bivalve across Europe by comparing morphological and molecular species identification methods.
View Article and Find Full Text PDFMar Pollut Bull
January 2025
MARE - Marine and Environmental Sciences Centre, ARNET - Aquatic Research Network Associate Laboratory, NOVA School of Science and Technology, NOVA University Lisbon, Caparica, Portugal; IPMA - Portuguese Institute for Sea and Atmosphere, I.P., Av. Alfredo Magalhães Ramalho 6, 1495-165 Algés, Portugal. Electronic address:
Macrobenthic communities play a crucial role in the functioning of estuarine ecosystems and serve as bioindicators of environmental quality. This study assessed the ecological quality of an estuarine system using the AMBI and M-AMBI indices. The following parameters were considered: (i) environmental factors (total organic matter, organic carbon, grain size, calcium carbonate), (ii) sediment trace metals (Pb, Zn, Cu, Cr, Co, Ni, Hg, Li, As), (iii) species composition (morphological and molecular identification), and (iv) anthropogenic activities.
View Article and Find Full Text PDFMar Pollut Bull
November 2024
IPMA, I.P. - Portuguese Institute for Sea and Atmosphere, Av. Dr. Alfredo Magalhães Ramalho, 6, 1495-165 Lisboa, Portugal; CCMAR - Centre of Marine Sciences, Campus of Gambelas, University of Algarve, 8005-139 Faro, Portugal; S2AQUA - Collaborative Laboratory, Association for a Sustainable and Smart Aquaculture, Av. Parque Natural da Ria Formosa s/n, 8700-194 Olhão, Portugal. Electronic address:
During the development and senescence of harmful algal blooms (HAB), most of the algae cells not ingested by grazers or filter-feeding organisms sink to the bottom, making sediments important reservoirs of algae toxins. In this study, lipophilic marine toxins were determined in the sediments collected from depths ranging from 5 to 145 m depth in the marine protected area of Arrábida (southwest Portuguese coast). Sediments were characterized in terms of granulometry, water and organic matter content.
View Article and Find Full Text PDFBMC Genomics
June 2024
Centre of Marine Sciences-CCMAR/CIMAR.LA, University of Algarve, Faro, 8005-139, Portugal.
Background: The Portuguese oyster Crassostrea angulata, a bivalve of significant economic and ecological importance, has faced a decline in both production and natural populations due to pathologies, climate change, and anthropogenic factors. To safeguard its genetic diversity and improve reproductive management, cryopreservation emerges as a valuable strategy. However, the cryopreservation methodologies lead to some damage in structures and functions of the cells and tissues that can affect post-thaw quality.
View Article and Find Full Text PDFPLoS One
May 2024
Portuguese Institute for Sea and Atmosphere, Afonso Chaves Observatory, Ponta Delgada, São Miguel, Azores, Portugal.
Front Nutr
April 2024
DivAV-Aquaculture, Upgrading and Bioprospection Division, IPMA-Portuguese Institute for Sea and Atmosphere, Algés, Portugal.
Sci Rep
March 2024
Department of Ocean Systems, NIOZ Royal - Netherlands Institute for Sea Research, Den Burg, The Netherlands.
Sci Rep
February 2024
Department of Ocean Systems, NIOZ Royal - Netherlands Institute for Sea Research, Den Burg, The Netherlands.
Atmospheric dust deposition can modulate the earth's climate and atmospheric CO through fertilising the ocean (nutrient source) and by accelerating the biological carbon pump through fuelling the ballasting process. To distinguish the biogeochemical effects of Saharan dust with respect to fertilization and ballasting, and to gain a broader perspective on the coccolith calcite Sr/Ca in relation to the drivers of coccolith export production, we determined the coccolith-Sr/Ca from a one-year (2012-2013) time-series sediment trap record in the western tropical North Atlantic (M4-49°N/12°W). High Sr/Ca were linked to enhanced export production in the upper part of the photic zone, most notably under windier, dry, and dustier conditions during spring.
View Article and Find Full Text PDFLong-term monitoring of zooplankton assemblages provides essential knowledge to assess key factors impacting marine ecosystems. Despite the importance of this type of data, monitoring stations worldwide are spatially and temporally limited due to the difficulty of maintaining them. In the northeastern Atlantic area, Cascais-Watch is one monitoring site operating since 2005, despite some constraints throughout the years, and has allowed the collection of important data on the zooplankton communities of the area.
View Article and Find Full Text PDFEnviron Sci Pollut Res Int
October 2023
CIMAR/CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, Avenida General Norton de Matos, S/N, 4450-208, Matosinhos, Portugal.
With the growing interest to exploit mineral resources in the deep-sea, there is the need to establish guidelines and frameworks to support hazard and risk assessment schemes. The present study used a subtidal species of filter-feeding bivalve, the clam Spisula solida, as a proxy to better understand the impacts of sediment plumes in marine organisms under hyperbaric conditions. Four concentrations of suspended sediments (0 g/L, 1 g/L, 2 g/L, and 4 g/L) were used in a mixture with different grain sizes at 4 Bar for 96 h.
View Article and Find Full Text PDFVirol J
August 2023
CIBIO-InBIO, Research Center in Biodiversity and Genetic Resources, University of Porto, Vairão, 4485-661, Portugal.
Members of the family Polyomaviridae have a circular double-stranded DNA genome that have been identified in various hosts ranging from mammals to arachnids. Here we report the identification and analysis of a complete genome sequence of a novel polyomavirus, Raja clavata polyomavirus (RcPyV1), from a cartilaginous fish, the thornback skate (Raja clavata). The genome sequence was determined using a metagenomics approach with an aim to provide baseline viral data in cartilaginous fish in different ecosystems.
View Article and Find Full Text PDFFront Psychiatry
July 2023
Faculty of Medicine, University of Lisbon, Lisbon, Portugal.
Numerous studies have described associations between the omega-3 index (defined as the RBC percentage of EPA and DHA) and mental conditions, but no risk stratification or target value has gathered consensus so far. This narrative review aims to summarize the published data on the association between omega-3 index and mental illness and to contribute to the concept of an omega-3 index in the field of mental health. The bibliographic searches have been carried out in PubMed, Scopus and Web of Science databases to find relevant English language original research studies related to that association.
View Article and Find Full Text PDFAntioxidants (Basel)
April 2023
CIIMAR-Interdisciplinary Centre of Marine and Environmental Research, University of Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208 Matosinhos, Portugal.
This study aimed to determine the effects of dietary inclusion of larvae (yellow worms) meal (TM) on meagre fish () whole-body fatty acids (FA) profile and hepatic and intestine oxidative status. For that purpose, fish were fed for 9 weeks a fishmeal-based diet (control) or diets including 10%, 20%, or 30% TM. With the increase in dietary TM level, whole-body oleic acid, linoleic acid, monounsaturated FA, and n-6 polyunsaturated FA (PUFA) increased while saturated FA (SFA), n-3 PUFA, n-3 long chain-PUFA, SFA:PUFA ratio, n3:n6 ratio, and FA retention decreased.
View Article and Find Full Text PDFSci Total Environ
June 2023
CIIMAR/CIMAR-LA - Interdisciplinary Centre of Marine and Environmental Research, Avenida General Norton de Matos S/N, 4450-208 Matosinhos, Portugal; FCUP - Department of Biology, Faculty of Sciences, University of Porto, Rua do Campo Alegre S/N, 4169-007 Porto, Portugal. Electronic address:
Although most deep-sea areas are remote in comparison to coastal zones, a growing body of literature indicates that many sensitive ecosystems could be under increased stress from anthropogenic sources. Among the multiple potential stressors, microplastics (MPs), pharmaceuticals and personal care products (PPCPs/PCPs) and the imminent start of commercial deep-sea mining have received increased attention. Here we review recent literature on these emerging stressors in deep-sea environments and discuss cumulative effects with climate change associated variables.
View Article and Find Full Text PDFOtolith shape analysis has been one of the most used approaches to study population structure in the past decades. Currently, two sets of shape descriptors are used to perform otolith shape analysis, namely, Elliptic Fourier descriptor (EFd), which focuses on the overall otolith shape differences, and Discrete Wavelet descriptor (DWd), which is sensible to local differences along the otolith contour. Here, the authors conducted a comparative analysis of the performance of both the descriptors in reconstructing the population structure and connectivity patterns in a small pelagic fish species with a wide geographical distribution and fast growth rate, the European sardine Sardina pilchardus (Walbaum, 1792), for the first time.
View Article and Find Full Text PDFJ Comp Physiol A Neuroethol Sens Neural Behav Physiol
May 2023
Centre of Marine Sciences (CCMAR), University of Algarve, Campus de Gambelas, 8005-139, Faro, Portugal.
The sensing of chemical cues is essential for several aspects of bivalve biology, such as the detection of food and pheromones. However, little is known about chemical communication systems in bivalves or the possible role of the osphradium as a chemosensory organ. To address this, we adapted an electrophysiological technique extensively used in vertebrates-the electro-olfactogram-to record from the osphradium in the Pacific oyster, Magallana gigas.
View Article and Find Full Text PDFAquat Toxicol
December 2022
Division of Oceanography and Marine Environment, IPMA, Portuguese Institute for Sea and Atmosphere, Av. Alfredo Magalhães Ramalho, 6, Algés 1495-165, Portugal; Aquário Vasco da Gama, Rua Direita do Dafundo, Cruz Quebrada 1495-718, Portugal.
Humans have exhaustively combusted fossil fuels, and released pollutants into the environment, at continuously faster rates resulting in global average temperature increase and seawater pH decrease. Climate change is forecasted to exacerbate the effects of pollutants such as the emergent rare earth elements. Therefore, the objective of this study was to assess the combined effects of rising temperature (Δ = + 4 °C) and decreasing pH (Δ = - 0.
View Article and Find Full Text PDFChemosphere
September 2022
Division of Oceanography and Marine Environment, IPMA - Portuguese Institute for Sea and Atmosphere, Av. Alfredo Magalhães Ramalho, 6, 1495-165, Algés, Portugal; CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, Avenida General Norton de Matos S/N, 4450-208, Matosinhos, Portugal.
Lanthanum (La) is one of the most abundant emergent rare earth elements. Its release into the environment is enhanced by its use in various industrial applications. In the aquatic environment, emerging contaminants are one of the stressors with the ability to compromise the fitness of its inhabitants.
View Article and Find Full Text PDFCryobiology
June 2022
Centre of Marine Sciences-CCMAR, University of Algarve, 8005-139, Faro, Portugal. Electronic address:
Marine bivalves are valuable resources, however, some shellfish populations are endangered due to factors such as anthropogenic pressure, pathologies or lack of reproduction synchrony. Portuguese oyster (Crassostrea angulata) and striped venus clam (Chamelea gallina) have high socio-economic value and their endangered natural populations require rehabilitation. Cryopreservation is a valuable method for the preservation and management of genetic resources for aquaculture and restocking.
View Article and Find Full Text PDFISME Commun
April 2022
British Antarctic Survey, Natural Environment Research Council, Cambridge, UK.
Marine sediment communities are major contributors to biogeochemical cycling and benthic ecosystem functioning, but they are poorly described, particularly in remote regions such as Antarctica. We analysed patterns and drivers of diversity in metazoan and prokaryotic benthic communities of the Antarctic Peninsula with metabarcoding approaches. Our results show that the combined use of mitochondrial Cox1, and 16S and 18S rRNA gene regions recovered more phyla, from metazoan to non-metazoan groups, and allowed correlation of possible interactions between kingdoms.
View Article and Find Full Text PDFFish Shellfish Immunol
April 2022
Centro Interdisciplinar de Investigação Marinha e Ambiental (CIIMAR), Universidade do Porto, Terminal de Cruzeiros do Porto de Leixões, Av. General Norton de Matos s/n, 4450-208, Matosinhos, Portugal; Inmunología y Patología de Peces, Centro de Investigación en Sanidad Animal (CISA, INIA-CSIC), Carretera de Algete a El Casar s/n, 28130 Valdeolmos-Alalpardo, Madrid, Spain. Electronic address:
Meagre (Argyrosomus regius) belongs to the family Sciaenidae and is a promising candidate for Mediterranean aquaculture diversification. As a relatively recent species in aquaculture, the physiological consequences of the immune system activation in meagre are understudied. Spleen, as a primary lymphoid organ has an essential role in meagre immune and inflammatory responses.
View Article and Find Full Text PDFJ Trace Elem Med Biol
May 2022
Division of Oceanography and Marine Environment, IPMA - Portuguese Institute for Sea and Atmosphere, Av. Alfredo Magalhães Ramalho, 6, 1495-165 Algés, Portugal; CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, Avenida General Norton de Matos S/N, 4450-208 Matosinhos, Portugal.
Studies dealing with Rare Earth Elements (REE) ecotoxicological behavior are scattered and with potential conflicting results. Climate change impacts on aquatic biota and is known to modify contaminants toxicokinetic. Nevertheless, the current knowledge on the potential interactions between climate change and REE is virtually non-existent.
View Article and Find Full Text PDFMar Pollut Bull
February 2022
IPMA - Portuguese Institute for Sea and Atmosphere, Av. Alfredo Magalhães Ramalho, 6, 1495-165 Algés, Portugal; CIIMAR - Interdisciplinary Centre of Marine and Environmental Research, Avenida General Norton de Matos S/N, 4450-208 Matosinhos, Portugal.
Increased Rare earth elements (REE) usage culminates in discharges into the environment. Mussels have been chosen as models in biomonitoring, hence, REE concentrations in Mytilus galloprovincialis from six locations on the Portuguese coast were accessed to determine natural concentrations and possible linkage to local ecosystem characteristics and temporal variations, by determining them in distinct seasons (autumn and spring). Samples from Porto Brandão (located on the south bank of the Tagus estuary) exhibited the highest REE concentrations, while mussels from Aljezur (the southernmost point on the Portuguese coast) exhibited the lowest, in both seasons.
View Article and Find Full Text PDFAnimals (Basel)
January 2022
Agro-Technological Institute of Castilla y León, Ctra. Arévalo s/n, 40196 Segovia, Spain.
The demand of optimal protein for human consumption is growing. The Food and Agriculture Organization (FAO) has highlighted aquaculture as one of the most promising alternatives for this protein supply gap due to the high efficiency of fish growth. However, aquaculture has been facing its own sustainability problem, because its high demand for protein has been traditionally satisfied with the use of fishmeal (FM) as the main source.
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