Electronic Nature of Neutral and Charged Two-Photon Absorbing Squaraines for Fluorescence Bioimaging Application.

The electronic properties of neutral 2,4-bis(4-bis(2-hydroxyethyl) amino-2-hydroxy-6-(2-(2-(2-methoxyethoxy)ethoxy)ethoxy)phenyl)squaraine () and charged 2-((3-octadecylbenzothiazol-2(3)-ylidene)methyl)-3-oxo-4-((3-(4-(pyridinium-1-yl)butyl)benzo-thiazol-3-ium-2-yl)methylene)cyclobut-1-enolate iodide () squaraine derivatives were analyzed based on comprehensive linear photophysical, photochemical, nonlinear optical studies (including two-photon absorption (2PA) and femtosecond transient absorption spectroscopy measurements), and quantum chemical calculations. The steady-state absorption, fluorescence, and excitation anisotropy spectra of these new squaraines revealed the values and mutual orientations of the main transition dipoles of and in solvents of different polarity, while their role in specific nonlinear optical properties was shown. The degenerate 2PA spectra of and exhibited similar shapes, with maximum cross sections of ∼300-400 GM, which were determined by the open aperture -scan method over a broad spectral range.

Ultrafast Dynamics of Electronically Excited Host-Guest Complexes of Cucurbiturils with Styryl Dyes.

The relaxation mechanism of electronically excited states of host-guest complexes between cucurbiturils (CB) and pyridinium styryl dyes is considered in detail on the basis of the recent results obtained by the up-conversion fluorescence technique. The addition of CB to aqueous dye solutions increases the longest fluorescence decay times from about 50 ps for the free dyes to 100-150 ps for the bound ones. This is attributed to the braking of intramolecular rotations around the single bonds of the styryl moiety that is provided by guest's displacement inside the cavity, whose driving force is a Coulombic interaction of the styryl dye cation and negatively charged CB portals.

The Time-Resolved Fluorescence Stokes Shift of Cucurbit[6]Uril Complexes with a Pyridinium Styryl Dye.

The time-resolved Stokes shift of fluorescence of styryl dye, trans-4-[4-(dimethylamino)-styryl]-1-methylpyridinium iodide (DASPI), and its host-guest complexes with cucurbit[6]uril (CB[6]) was studied by up-conversion technique on a 5 ps time scale. In all cases, the solvation time correlation function - that describes relaxation of the fluorescent state - contains two components. The time constant of the first component, which is related to the vibrational relaxation of the dye cation, increases from 118 fs without CB[6] to 224 fs in the presence CB[6].

Theoretical study of chromophores for biological sensing: Understanding the mechanism of rhodol based multi-chromophoric systems.

Development of two-photon fluorescent probes can aid in visualizing the cellular environment. Multi-chromophore systems display complex manifolds of electronic transitions, enabling their use for optical sensing applications. Time-Dependent Density Functional Theory (TDDFT) methods allow for accurate predictions of the optical properties.

pyEFP: Automatic decomposition of the complex molecular systems into rigid polarizable fragments.

We present an open source tool able to describe intermolecular electrostatic interactions within the framework of the effective fragment potential (EFP) method. Complex molecular structure is subdivided into compact rigid fragments and parameters of their interactions are obtained from ab initio calculations. Automatic procedure allows for searching of these parameters into the existing database and merge new fragments into it.

Stabilizing g-States in Centrosymmetric Tetrapyrroles: Two-Photon-Absorbing Porphyrins with Bright Phosphorescence.

Using time-dependent density functional theory (TDDFT) and sum-overstates (SOS) formalism, we predicted significant stabilization of 2P-active g-states in a compact fully symmetric porphyrin, in which all four pyrrolic fragments are fused with phathalimide residues via the β-carbon positions. The synthesis of a soluble, nonaggregating meso-unsubstituted tetraarylphthalimidoporphyrin (TAPIP) was then developed, and the spectroscopic measurements confirmed that a strongly 2P-active state in this porphyrin is stabilized below the B (Soret) state level. Single-crystal X-ray analysis revealed near-ideally planar geometry of the TAPIP macrocycle, while its tetra-meso-arylated analogue (meso-ArTAPIP) was found to be highly saddled.

First principles crystal engineering of nonlinear optical materials. I. Prototypical case of urea.

The crystalline materials with nonlinear optical (NLO) properties are critically important for several technological applications, including nanophotonic and second harmonic generation devices. Urea is often considered to be a standard NLO material, due to the combination of non-centrosymmetric crystal packing and capacity for intramolecular charge transfer. Various approaches to crystal engineering of non-centrosymmetric molecular materials were reported in the literature.

Effective Fragment Potential Method for H-Bonding: How To Obtain Parameters for Nonrigid Fragments.

Accuracy of the effective fragment potential (EFP) method was explored for describing intermolecular interaction energies in three dimers with strong H-bonded interactions, formic acid, formamide, and formamidine dimers, which are a part of HBC6 database of noncovalent interactions. Monomer geometries in these dimers change significantly as a function of intermonomer separation. Several EFP schemes were considered, in which fragment parameters were prepared for a fragment in its gas-phase geometry or recomputed for each unique fragment geometry.

Thermodynamic stability of stoichiometric LaFeO and BiFeO: a hybrid DFT study.

BiFeO perovskite attracts great attention due to its multiferroic properties and potential use as a parent material for BiSrFeO and BiSrFeCoO solid solutions in intermediate temperature cathodes of oxide fuel cells. Another iron-based LaFeO perovskite is the end member for well-known solid solutions (LaSrFeCoO) used for oxide fuel cells and other electrochemical devices. In this study an ab initio hybrid functional approach was used for the study of the thermodynamic stability of both LaFeO and BiFeO with respect to decompositions to binary oxides and to elements, as a function of temperature and oxygen pressure.

Symmetry-Breaking in Cationic Polymethine Dyes: Part 2. Shape of Electronic Absorption Bands Explained by the Thermal Fluctuations of the Solvent Reaction Field.

The electronic absorption spectra of the symmetric cyanines exhibit dramatic dependence on the conjugated chain length: whereas short-chain homologues are characterized by the narrow and sharp absorption bands of high intensity, the long-chain homologues demonstrate very broad, structureless bands of low intensity. Spectra of the intermediate homologues combine both features. These broad bands are often explained using spontaneous symmetry-breaking and charge localization at one of the termini, and the combination of broad and sharp features was interpreted as coexistence of symmetric and asymmetric species in solution.

Charge localization and charge transfer in the Bebq2 monomer and dimer.

The geometrical structure and electronic properties of bis(10-hydroxybenzo[h]quinolinato)beryllium (Bebq2) molecule and its dimer both in the neutral and in the positively and negatively charged states were studied using quantum-chemical calculations. It is found that the excess charge in the charged systems is localized on one of the hydroxybenzoquinoline ligands. Structural changes in charged Bebq2 are pronounced in the charged ligand and nearly negligible in the neutral ligand.

Decay kinetics of the excited S1 state of the cyanine dye Cy(+)I(-) (thiacarbocyanine iodide): the computation of quantum yields for different pathways.

This work explains the unordinary solvent effect which was observed in the photochemical decay kinetics for the cyanine dye thiacarbocyanine iodide (Cy(+)I(-)) in binary solvent mixtures toluene/dimethylsulfoxide. The interpretation is formulated in terms of the probability density F(R) describing the distribution of interionic distances R in the ion pair Cy(+)I(-) and depending on the solvent composition. The proper normalization of this distribution is expressed via the degree of association α for the ion pair in a given solvent mixture.