14 results match your criteria: "Peter the Great St. Petersburg Polytechnical University[Affiliation]"

SERCA pump as a novel therapeutic target for treating neurodegenerative disorders.

Biochem Biophys Res Commun

November 2024

Laboratory of Molecular Neurodegeneration, Peter the Great St. Petersburg Polytechnical University, St. Petersburg, Russia. Electronic address:

The neurodegenerative disorders, such as Alzheimer's disease (AD), Parkinson's disease (PD), Amyotrophic lateral sclerosis (ALS), Huntington's disease (HD) and Spinocerebellar ataxias (SCAs), present an enormous medical, social, financial and scientific problem. Despite intense research into the causes of these disorders, only marginal progress has been made in the clinic and no cures exist for any of them. Most of the scientific effort has been focused on identification of the major causes of these diseases and on developing ways to target them, such as targeting amyloid accumulation for AD or targeting expression of mutant Huntingtin for HD.

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Alzheimer's disease (AD) is a neurodegenerative disorder that affects memory formation and storage processes. Dysregulated neuronal calcium (Ca) has been identified as one of the key pathogenic events in AD, and it has been suggested that pharmacological agents that stabilize Ca neuronal signaling can act as disease-modifying agents in AD. In previous studies, we demonstrated that positive allosteric regulators (PAMs) of the sarco/endoplasmic reticulum Ca ATPase (SERCA) pump might act as such Ca-stabilizing agents and exhibit neuroprotective properties.

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A comparative study of figure-of-merit fiber sensors of the mass concentration of NaCl solutions based on single-mode and multi-mode fibers was carried out. Lossy mode resonance is realized on chemically thinned sections of optical fibers to various diameters (from 26 to 100 μm) coated with ZnTe. Thin-film coatings were applied using the method of metalorganic chemical vapor deposition (MOCVD).

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Films of zinc telluride (ZnTe) were deposited on the surface of a chemically thinned section of an optical fiber by metalorganic chemical vapor deposition. The boundary values of temperatures and the concentration ratios of the initial tellurium and zinc precursors at which the synthesis of ZnTe coatings is possible are determined. The influence of the position of the thinned part of the optical fiber in the reactor on the growth rate of films on the side surface of the fiber was studied, on the basis of which, the parameters of the deposition zone were determined.

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A fiber-optic refractometer for various liquids with refractive indices in the range from 1.33 to 1.43 has been manufactured and tested.

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Article Synopsis
  • Evolutionary computing (EC) is a field focused on optimization algorithms that mimic the principles of natural evolution, leading to the creation of more efficient solutions than traditional methods.
  • EC approaches are seen as particularly useful for enhancing synthetic biology and biotechnology experiments, like in vitro evolution, where biological macromolecules are directed to evolve.
  • The study extends John Holland's evolutionary search concepts by applying a new fitness function, known as Biological Royal Staircase (BioRS), which is designed to work effectively in identifying and preserving beneficial traits during experimental evolutionary searches.
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Computer Simulation of a Surface Charge Nanobiosensor with Internal Signal Integration.

Biosensors (Basel)

October 2021

Institute of Electronics and Telecommunications, Peter the Great St. Petersburg Polytechnical University, Polytechnicheskaya, 29, 195251 St. Petersburg, Russia.

The ionized states of molecular analytes located on solid surfaces require profound investigation and better understanding for applications in the basic sciences in general, and in the design of nanobiosensors, in particular. Such ionized states are induced by the interactions of molecules between them in the analyzed substance and with the target surface. Here, computer simulations using COMSOL Multiphysics software show the effect of surface charge density and distribution on the output generation in a dynamic PIN diode with gate control.

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Synthesis of biocompatible near infrared phosphorescent complexes and their application in bioimaging as triplet oxygen sensors in live systems are still challenging areas of organometallic chemistry. We have designed and synthetized four novel iridium [Ir(N^C)(N^N)] complexes (N^C-benzothienyl-phenanthridine based cyclometalated ligand; N^N-pyridin-phenanthroimidazol diimine chelate), decorated with oligo(ethylene glycol) groups to impart these emitters' solubility in aqueous media, biocompatibility, and to shield them from interaction with bio-environment. These substances were fully characterized using NMR spectroscopy and ESI mass-spectrometry.

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We demonstrate a compact picosecond master-oscillator power-amplifier (MOPA) system based on an Yb-doped polarization-maintaining double-clad tapered fiber (T-DCF) delivering pulses with over 1.26 MW peak power and average output power up to 200 W preserving near diffraction limited beam quality. The unique properties of an active tapered fiber enable to amplify the seed pulses directly with no need for applying of additional stretching technique.

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Equilibration of energies in a two-dimensional harmonic graphene lattice.

Philos Trans A Math Phys Eng Sci

January 2020

Higher School of Theoretical Mechanics, Peter the Great St Petersburg Polytechnical University, Sankt-Peterburg, Russian Federation.

We study dynamical phenomena in a harmonic graphene (honeycomb) lattice, consisting of equal particles connected by linear and angular springs. Equations of in-plane motion for the lattice are derived. Initial conditions typical for molecular dynamic modelling are considered.

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We studied the effect of status epilepticus (SE) on short-term synaptic plasticity. The amplitudes of field potentials in response to extracellular stimulation of the Schaffer collaterals were recorded in hippocampal slices. Subtle modifications were revealed on day 1 after SE, whereas on days 3 and 7 we did not find any differences from the control.

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The effect peptides KE, KED, AED and AEDG on proliferation (Ki-67), regeneration and aging (CD98hc), apoptosis (caspase-3), and extracellular matrix remodeling (MMP-9) in skin fibroblasts during their aging in culture were studied by immunofluorescent confocal microscopy. All studied peptides inhibited MMP-9 synthesis that increases during aging of skin fibroblasts and enhanced the expression of Ki-67 and CD98hc that are less intensively synthesized during cell aging. Peptides AED and AEDG suppressed caspase-dependent apoptosis that increases during aging of cell cultures.

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Article Synopsis
  • Gene network simulations often focus on linear interactions between single genes, but real biological genes have more complex regulatory structures with multiple cis-regulatory modules (CRMs).
  • The hunchback (hb) gene in Drosophila development is a specific example that utilizes three CRMs to generate two different mRNA transcripts.
  • A modeling framework using differential equations is proposed to capture these regulatory dynamics, incorporating a genetic algorithms approach to screen potential interactions and validate them against biological expression data.
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