168 results match your criteria: "Pasteur Institute of Lille[Affiliation]"

Deciphering the ghost proteome in ovarian cancer cells by deep proteogenomic characterization.

Cell Death Dis

September 2024

Univ. Lille, Inserm, CHU Lille, U1192, Protéomique Réponse Inflammatoire Spectrométrie de Masse - PRISM, F-59000, Lille, France.

Article Synopsis
  • Proteogenomics integrates genomics and mass spectrometry to uncover both standard and alternative proteins, enhancing personalized medicine for conditions like ovarian cancer.
  • Through RNA-sequencing and protein database generation, researchers identified 128 reference proteins and 30 alternative proteins unique to ovarian cancer cell lines, uncovering a specific mutation in an alternative protein.
  • Advanced techniques like cross-linking mass spectrometry revealed interactions between alternative and reference proteins, suggesting that some alternative proteins may play crucial roles in important cellular processes such as DNA replication and repair.
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Carbapenem resistance in is primarily due to the acquisition of carbapenemases and is often associated with a diminution of the membrane permeability. The outer membrane protein, OprD, is a well-known route, by which carbapenems, predominantly imipenem, can enter the cell, and its loss has been associated with reduced susceptibility to imipenem. In this study, we investigated the antibiotic susceptibility patterns of isogenic mutants containing various acquired β-lactamases, including carbapenemases, in a porin-depleted background.

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Towards the recognition of oligogenic forms of type 2 diabetes.

Trends Endocrinol Metab

July 2024

Inserm/CNRS UMR 1283/8199, Pasteur Institute of Lille, EGID, Lille University Hospital, Lille, France; University of Lille, Lille, France; Department of Metabolism, Imperial College London, Hammersmith Hospital, London, UK. Electronic address:

The demarcation between monogenic and polygenic type 2 diabetes (T2D) is less distinct than previously believed. Notably, recent research has highlighted a new entity, that we suggest calling oligogenic forms of T2D, serving as a genetic link between these two forms. In this opinion article, we have reviewed scientific advances that suggest categorizing genes involved in oligogenic T2D.

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Article Synopsis
  • The study investigates the use of salt substitutes (saltSubs) for managing sodium intake in patients with chronic heart failure (CHF) in France, focusing on healthcare professional (HCP) recommendations and patient consumption.
  • Only 13% of HCPs recommended saltSubs, while 17% of patients and 22% of caregivers reported using them, with those recommended showing a recent hospitalization for acute heart failure.
  • The findings revealed that patients advised to use saltSubs were less likely to follow guideline-directed medical therapies (GDMTs), particularly angiotensin-converting enzyme inhibitors and related medications, indicating a potential conflict between saltSubs and standard CHF treatments.
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Article Synopsis
  • The study aimed to estimate the prevalence of chronic kidney disease (CKD) in France using the RENALGO-EXPERT algorithm, focusing on healthcare consumption data from the French National Health claims database between 2018 and 2021.
  • The results showed an increase in estimated CKD prevalence from 8.1% to 10.5% over the years, with the algorithm having a low positive predictive value (6.2%) and a high negative predictive value (99.1%).
  • The findings highlight that while the algorithm can help identify CKD patients in typical care pathways, it has limitations in accurately detecting undiagnosed or early-stage patients, indicating a need for more comprehensive assessment methods
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Aims: The 2021 European Society of Cardiology prevention guidelines recommend the use of (lifetime) risk prediction models to aid decisions regarding initiation of prevention. We aimed to update and systematically recalibrate the LIFEtime-perspective CardioVascular Disease (LIFE-CVD) model to four European risk regions for the estimation of lifetime CVD risk for apparently healthy individuals.

Methods And Results: The updated LIFE-CVD (i.

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Purpose: Carbapenemase-producing Enterobacterales are a growing threat, and very few therapeutic options remain active against those multidrug resistant bacteria. Aztreonam is the molecule of choice against metallo-beta-lactamases (MBL) producers since it is not hydrolyzed by those enzymes, but the co-production of acquired plasmidic cephalosporinases or extended-spectrum β-lactamases leading to aztreonam resistance may reduce the efficacy of this molecule. Hence, the development of the aztreonam-avibactam (AZA) combination provides an interesting therapeutic alternative since avibactam inhibits the activity of both cephalosporinases and extended-spectrum β-lactamases.

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Dominant PDX1 deficiency causes highly penetrant diabetes at different ages, associated with obesity and exocrine pancreatic deficiency: Lessons for precision medicine.

Diabetes Metab

January 2024

Inserm UMR1283, CNRS UMR8199, Pasteur Institute of Lille, European Genomic Institute for Diabetes, Université de Lille, Lille University Hospital, Cedex, Lille 59045, France; University of Lille, Lille University Hospital, Lille, France; Department of Metabolism, Imperial College London, Hammersmith Hospital, London, UK. Electronic address:

Article Synopsis
  • The study investigates the effects of pathogenic PDX1 variants on diabetes and identifies potential treatments for affected individuals.
  • Researchers examined a family with a new PDX1 variant and analyzed data from 87,000 participants, noting wide age variability in diabetes onset and high rates of obesity and pancreatic issues among carriers.
  • The findings suggest that dipeptidyl peptidase 4 inhibitors (DPP4i) and glucagon-like peptide-1 receptor agonists (GLP1-RA) are promising treatments for managing diabetes and related weight issues, paving the way for precision medical strategies.
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Importance: There is increasing recognition that vascular disease, which can be treated, is a key contributor to dementia risk. However, the contribution of specific markers of vascular disease is unclear and, as a consequence, optimal prevention strategies remain unclear.

Objective: To disentangle the causal relation of several key vascular traits to dementia risk: (i) white matter hyperintensity (WMH) burden, a highly prevalent imaging marker of covert cerebral small vessel disease (cSVD); (ii) clinical stroke; and (iii) blood pressure (BP), the leading risk factor for cSVD and stroke, for which efficient therapies exist.

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Objective: Insulin resistance is characterized by ectopic fat accumulation leading to cardiac diastolic dysfunction and nonalcoholic fatty liver disease. The objective of this study was to determine whether treatment with the peroxisome proliferator-activated receptor-α (PPARα) agonist ciprofibrate has direct effects on cardiac and hepatic metabolism and can improve insulin sensitivity and cardiac function in insulin-resistant volunteers.

Methods: Ten insulin-resistant male volunteers received 100 mg/d of ciprofibrate and placebo for 5 weeks in a randomized double-blind crossover study.

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Article Synopsis
  • This study examines the relationship between resting heart rate and cardiovascular diseases, identifying 493 genetic variants linked to this trait through a large-scale analysis of 835,465 individuals.
  • It highlights the significance of higher genetically predicted resting heart rates, which are associated with an increased risk of dilated cardiomyopathy but lower risk for conditions like atrial fibrillation and ischemic strokes.
  • The study also challenges previous findings on resting heart rate and all-cause mortality, suggesting earlier results may have been influenced by biases, ultimately enhancing our understanding of the biological implications of resting heart rate in cardiovascular health.
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Exploring the Communication of the SASP: Dynamic, Interactive, and Adaptive Effects on the Microenvironment.

Int J Mol Sci

June 2023

University of Lille, CNRS, Inserm, Pasteur Institute of Lille, UMR9020-U1277-CANTHER-Cancer Heterogeneity Plasticity and Resistance to Therapies, 59000 Lille, France.

Cellular senescence is a complex cell state that can occur during physiological ageing or after exposure to stress signals, regardless of age. It is a dynamic process that continuously evolves in a context-dependent manner. Senescent cells interact with their microenvironment by producing a heterogenous and plastic secretome referred to as the senescence-associated secretory phenotype (SASP).

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Cefiderocol (FDC) is a siderophore cephalosporin with a broad spectrum of activity against many multidrug-resistant Gram-negative bacteria. Acquired resistance to FDC has been already reported among Gram-negative isolates, thus highlighting the need for rapid and accurate identification of such resistant pathogens, in order to control their spread. Therefore, the SuperFDC medium was developed to screen FDC-resistant , Pseudomonas aeruginosa, and Acinetobacter baumannii.

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Heterozygous pathogenic variants in POMC are not responsible for monogenic obesity: Implication for MC4R agonist use.

Genet Med

July 2023

Inserm/CNRS UMR 1283/8199, Pasteur Institute of Lille, EGID, Lille, France; University of Lille, Lille, France; Department of Metabolism, Imperial College London, London, United Kingdom. Electronic address:

Purpose: Recessive deficiency of proopiomelanocortin (POMC) causes childhood-onset severe obesity. Cases can now benefit from the melanocortin 4 receptor agonist setmelanotide. Furthermore, a phase 3 clinical trial is evaluating setmelanotide in heterozygotes for POMC.

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Employing non-targeted interactomics approach and subcellular fractionation to increase our understanding of the ghost proteome.

iScience

February 2023

Université de Lille, University Lille, CHU Lille, Inserm U1192 - Protéomique Réponse Inflammatoire Spectrométrie de Masse - PRISM, 59000 Lille, France.

Article Synopsis
  • Eukaryotic mRNA, long thought to only code for one protein (monocistronic), is being challenged by the discovery of alternative proteins (AltProts), suggesting a more complex "ghost proteome."
  • Researchers utilized subcellular fractionation techniques to better identify these AltProts and their protein-protein interactions, uncovering 112 unique AltProts and 220 crosslinks, including interactions between AltProts and well-known Reference Proteins (RefProts).
  • Specific interactions highlighted in the study included IP_2292176 (AltFAM227B) with HLA-B, indicating a potential new immunopeptide, and interactions between HIST1H4F and various AltProts, suggesting their role in
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Background: Since the latest 2017 French guidelines, knowledge about idiopathic pulmonary fibrosis has evolved considerably.

Methods: Practical guidelines were drafted on the initiative of the Coordinating Reference Center for Rare Pulmonary Diseases, led by the French Language Pulmonology Society (SPLF), by a coordinating group, a writing group, and a review group, with the involvement of the entire OrphaLung network, pulmonologists practicing in various settings, radiologists, pathologists, a general practitioner, a health manager, and a patient association. The method followed the "Clinical Practice Guidelines" process of the French National Authority for Health (HAS), including an online vote using a Likert scale.

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Background: Diabetic kidney disease (DKD) is the most common cause of kidney failure in the world, and novel predictive biomarkers and molecular mechanisms of disease are needed. Endothelial cell-specific molecule-1 (Esm-1) is a secreted proteoglycan that attenuates inflammation. We previously identified that a glomerular deficiency of Esm-1 associates with more pronounced albuminuria and glomerular inflammation in DKD-susceptible relative to DKD-resistant mice, but its contribution to DKD remains unexplored.

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Senescence Induced by UVB in Keratinocytes Impairs Amino Acids Balance.

J Invest Dermatol

April 2023

Laboratory of Biochemistry and Cell Biology (URBC), Namur Research Institute for Life Sciences (NARILIS), University of Namur, Namur, Belgium. Electronic address:

Skin is one of the most exposed organs to external stress. Namely, UV rays are the most harmful stress that could induce important damage leading to skin aging and cancers. At the cellular level, senescence is observed in several skin cell types and contributes to skin aging.

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Although hepatitis E virus (HEV) is the major leading cause of enterically transmitted viral hepatitis worldwide, many gaps remain in the understanding of the HEV lifecycle. Notably, viral factories induced by HEV have not been documented yet, and it is currently unknown whether HEV infection leads to cellular membrane modeling as many positive-strand RNA viruses. HEV genome encodes the ORF1 replicase, the ORF2 capsid protein and the ORF3 protein involved in virion egress.

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SDHx mutation and pituitary adenoma: can in vivo 1H-MR spectroscopy unravel the link?

Endocr Relat Cancer

February 2023

Sorbonne University, nuclear medicine department, Pitié-Salpêtrière Hospital, Assistance -Publique Hôpitaux de Paris, Paris, France.

Germline mutations in genes encoding succinate dehydrogenase (SDH) are frequently involved in pheochromocytoma/paraganglioma (PPGL) development and were implicated in patients with the '3PAs' syndrome (associating pituitary adenoma (PA) and PPGL) or isolated PA. However, the causality link between SDHx mutation and PA remains difficult to establish, and in vivo tools for detecting hallmarks of SDH deficiency are scarce. Proton magnetic resonance spectroscopy (1H-MRS) can detect succinate in vivo as a biomarker of SDHx mutations in PGL.

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Mechanisms of Resistance Development to Imipenem-Relebactam in KPC-Producing Klebsiella pneumoniae.

Antimicrob Agents Chemother

October 2022

Medical and Molecular Microbiology, Faculty of Science and Medicine, University of Fribourggrid.8534.a, Fribourg, Switzerland.

Carbapenem-resistant , such as KPC-producing Klebsiella pneumoniae, represent a major threat to public health. Novel drug combinations including imipenem-relebactam (IPM-REL) have recently been introduced and have been shown to exhibit excellent activity toward such strains. However, there has recently been reports of the emergence of IPM-REL resistance in KPC-producing K.

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Article Synopsis
  • The study investigates mosaicism in patients suspected of having multiple endocrine neoplasia type 1 (MEN1), a genetic disorder, using advanced sequencing techniques.
  • By applying digital targeted next-generation sequencing, the researchers found MEN1 mosaic pathogenic variants in three out of 119 patients, indicating a detection rate of 17% among those with three or more MEN1 lesions.
  • The findings suggest that MEN1 mosaicism may be more common than previously recognized, highlighting the importance of using sophisticated genetic testing methods for accurate diagnosis.
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Article Synopsis
  • * The HEV genome encodes three proteins, including ORF2, which has three isoforms with distinct roles in the virus's lifecycle, such as forming the viral capsid and acting as immune decoys.
  • * Research on ORF2 mutants revealed an Arginine-Rich Motif (ARM) that regulates ORF2's movement and functionality, helping the virus manipulate host cell processes for its survival and replication.
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Hepatitis E virus (HEV) is the causative agent of hepatitis E in humans and is the leading cause of enterically transmitted viral hepatitis worldwide. Ribavirin (RBV) is currently the only treatment option for many patients; however, cases of treatment failures or posttreatment relapses have been frequently reported. RBV therapy was shown to be associated with an increase in HEV genome heterogeneity and the emergence of distinct HEV variants.

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Article Synopsis
  • * The study reviews six cases of MEN1 mosaicism from the literature alongside six additional cases reported by the French TENgen network.
  • * Findings indicate that MEN1 mosaicism has a similar severity as typical MEN1 mutations and calls for better detection methods to enhance patient monitoring and genetic counseling.
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