Novel bacteriophages targeting wheat phyllosphere bacteria carry DNA modifications and single-strand breaks.

The phyllosphere microbiome can positively or negatively impact plant health and growth, but we currently lack the tools to control microbiome composition. Contributing to a growing collection of bacteriophages (phages) targeting bacteria living in the wheat phyllosphere, we here isolate and sequence eight novel phages targeting common phyllosphere Erwinia and Pseudomonas strains, including two jumbo phages. We characterize genomic, phylogenetic, and morphological traits from these phages and argue for establishing four novel viral genera.

Overwintering of Usutu virus in mosquitoes, The Netherlands.

Analyses of mosquito-borne virus outbreaks have revealed the presence of similar virus strains over several years. However, it remains unclear how mosquito-borne viruses can persist over winter, when conditions are generally unfavorable for virus circulation. One potential route for virus persistence is via diapausing mosquitoes.

MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration.

Specialized or secondary metabolites are small molecules of biological origin, often showing potent biological activities with applications in agriculture, engineering and medicine. Usually, the biosynthesis of these natural products is governed by sets of co-regulated and physically clustered genes known as biosynthetic gene clusters (BGCs). To share information about BGCs in a standardized and machine-readable way, the Minimum Information about a Biosynthetic Gene cluster (MIBiG) data standard and repository was initiated in 2015.

Optimizing nitrogen management for pollution control in Lake Baiyangdian following water replenishment.

Eutrophication is an ecological process showing the state shift of a lake. This shift could be triggered when the external nitrogen (N) loads exceed N thresholds. Meanwhile, external water inputs and the resulting changes in lake water depth could affect N thresholds.

Understanding human-commensalism through an ecological and evolutionary framework.

Human-commensalism has been intuitively characterised as an interspecific interaction whereby non-human individuals benefit from tight associations with anthropogenic environments. However, a clear definition of human-commensalism, rooted within an ecological and evolutionary framework, has yet to be proposed. Here, we define human-commensalism as a population-level dependence on anthropogenic resources, associated with genetic differentiation from the ancestral, non-commensal form.

Riverine connectivity modulates elemental fluxes through a 200- year period of intensive anthropic change in the Magdalena River floodplains, Colombia.

Tropical floodplain lakes are increasingly impacted by human activities, yet their pathways of spatial and temporal degradation, particularly under varying hydrological connectivity regimes and climate change, remain poorly understood. This study examines surface-sediment samples and Pb-dated sediment cores from six floodplain lakes, representing a gradient in hydrological connectivity in the lower Magdalena River Basin, Colombia. We analysed temporal and spatial variations in several sediment biogeochemical indicators: the concentration and flux of nutrients, heavy metals, and organic matter (OM), and redox conditions, flooding and erosion.

Female reproductive tract microbiota varies with MHC profile.

Numerous studies have shown that a healthy reproductive tract microbiota is crucial for successful reproduction and that its composition is influenced by various environmental and host factors. However, it is not known whether the reproductive microbiota is also shaped by the major histocompatibility complex (MHC), a family of genes essential to differentiate 'self' from 'non-self' peptides to initiate an adaptive immune response. We tested the association between the follicular fluid microbiome and MHC genes in 27 women.

Defaunation impacts on the carbon balance of tropical forests.

The urgent need to mitigate and adapt to climate change necessitates a comprehensive understanding of carbon cycling dynamics. Traditionally, global carbon cycle models have focused on vegetation, but recent research suggests that animals can play a significant role in carbon dynamics under some circumstances, potentially enhancing the effectiveness of nature-based solutions to mitigate climate change. However, links between animals, plants, and carbon remain unclear.

The future of algal blooms in lakes globally is in our hands.

Lakes are fundamental to society and nature, yet they are currently exposed to excessive nutrients and climate change, resulting in algal blooms. In the future, this may change, but how and where still needs more scientific attention. Here, we explore future trends in algal blooms in lakes globally for >3500 'representative lakes' for the year 2050, considering the attribution of both nutrient and climate factors.

Differential response of subterranean microbiome to exogenous organic matter input in a cave ecosystem.

As a recurrent climatic phenomenon in the context of climate change, extreme rainstorms induce vertical translocation of organic matter and increase moisture content in terrestrial ecosystems. However, it remains unclear whether heavy rainstorms can impact microbial communities in the deep biosphere by modulating organic matter input. In this study, we present findings on the different responses of bacterial and fungal communities in a subsurface cave to rainstorms and moisture variations through field surveys and microcosm experiments.

The comparison effect on earthworms between conventional and biodegradable microplastics.

Many studies have reported the toxic effects of microplastics (MPs) on organisms, especially on how conventional plastics affect organisms after short-term exposure. The effects of biodegradable plastics on organisms are, however, largely unexplored, especially concerning their impact after long-term exposure. We perform a series of experiments to examine the effects of conventional (polyethylene (PE)) and biodegradable (polylactic acid (PLA)) microplastics on earthworms at three concentrations (0.

Mode of application of sulfonated graphene modulated bioavailable heavy metal contents and microbial community composition in long-term heavy metal contaminated soil.

Nanomaterials are increasingly recognized for their potential in soil remediation. However, their impact on soil microbial communities in contaminated soil remains poorly understood. In this study, we investigated the dynamic effects of sulfonated graphene (SG) following one-time or repeated applications on heavy metal availability and soil microbial communities in long-term heavy metal-contaminated soil over 180 days.

Evaluating Mechanisms of Soil Microbiome Suppression of Striga Infection in Sorghum.

The root parasitic weed has a devastating effect on sorghum and other cereal crops in Sub-Saharan Africa. Available Striga management strategies are rarely sufficient or not widely accessible or affordable. Identification of soil- or plant-associated microorganisms that interfere in the Striga infection cycle holds potential for development of complementary biological control measures.

Global changes and their environmental stressors have a significant impact on soil biodiversity-A meta-analysis.

Identifying the main threats to soil biodiversity is crucial as soils harbor ∼60% of global biodiversity. Many previous meta-analyses investigating the impact of different global changes (GCs) on biodiversity have omitted soil fauna or are limited by the GCs studied. We conducted a broad-scale meta-analysis focused on soil fauna communities, analyzing 3,161 effect sizes from 624 publications studying climate change, land-use intensification, pollution, nutrient enrichment, invasive species and habitat fragmentation.

Circadian clock period length is not consistently linked to chronotype in a wild songbird.

Circadian clock properties vary between individuals and relate to variation in entrained timing in captivity. How this variation translates into behavioural differences in natural settings, however, is poorly understood. Here, we tested in great tits whether variation in the free-running period length (tau) under constant dim light (LL) was linked to the phase angle of the entrained rhythm ("chronotype") in captivity and in the wild, as recently indicated in our study species.

Risk assessment of toxic cyanobacterial blooms in recreational waters: A comparative study of monitoring methods.

Toxic cyanobacterial blooms impose a health risk to recreational users, and monitoring of cyanobacteria and associated toxins is required to assess this risk. Traditionally, monitoring for risk assessment is based on cyanobacterial biomass, which assumes that all cyanobacteria potentially produce toxins. While these methods may be cost effective, relatively fast, and more widely accessible, they often lead to an overestimation of the health risk induced by cyanotoxins.

Farming practices to enhance biodiversity across biomes: a systematic review.

Intensive agriculture for food and feed production is a key driver of global biodiversity loss. It is generally assumed that more extensive practices are needed to reconcile food production with biodiversity conservation. In a literature review across biomes and for seven taxa, we retrieved 35 alternative practices (e.

Normalized difference vegetation index analysis reveals increase of biomass production and stability during the conversion from conventional to organic farming.

Monitoring agriculture by remote sensing enables large-scale evaluation of biomass production across space and time. The normalized difference vegetation index (NDVI) is used as a proxy for green biomass. Here, we used satellite-derived NDVI of arable farms in the Netherlands to evaluate changes in biomass following conversion from conventional to organic farming.

Early-life diet composition affects phenotypic variation of correlated animal personality traits.

Behavioural traits are under both genetic and environmental influence during early life stages. Early environmental conditions related to the amount and type of food have been found to alter behaviour in many organisms. However, how early life diet affects the variation in and the correlation between behavioural traits is largely unknown.

Fungal Planet description sheets: 1614-1696.

Novel species of fungi described in this study include those from various countries as follows: , in leaves of , among deep leaf litter, from uredinium of on , on well-rotted twigs and litter in mixed wet sclerophyll and subtropical rainforest. , on twigs of , on bark, in savannas with shrubs and trees. , on leaves of , (incl.

Exploring modes of microbial interactions with implications for methane cycling.

Methanotrophs are the sole biological sink of methane. Volatile organic compounds (VOCs) produced by heterotrophic bacteria have been demonstrated to be a potential modulating factor of methane consumption. Here, we identify and disentangle the impact of the volatolome of heterotrophic bacteria on the methanotroph activity and proteome, using Methylomonas as model organism.

Combined measures in lake restoration - A powerful approach as exemplified from Lake Groote Melanen (the Netherlands).

Controlling lake eutrophication is a challenge. A case-specific diagnostics driven approach is recommended that will guide to a suite of measures most promising in restoration of eutrophic lakes as exemplified by the case of the shallow lake Groote Melanen, The Netherlands. A lake system analysis identified external and internal nutrient load as main reasons for poor water quality and reoccurring cyanobacterial blooms in the lake.

Integrating viruses into soil food web biogeochemistry.

The soil microbiome is recognized as an essential component of healthy soils. Viruses are also diverse and abundant in soils, but their roles in soil systems remain unclear. Here we argue for the consideration of viruses in soil microbial food webs and describe the impact of viruses on soil biogeochemistry.