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47 results match your criteria: "Netherlands Centre for Biodiversity Naturalis[Affiliation]"
Front Pharmacol
May 2023
Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
Genetic and epigenetic events have been implicated in the downregulation of the cellular antigen processing and presentation machinery (APM), which in turn, has been associated with cancer evasion of the immune system. When these essential components are lacking, cancers develop the ability to subvert host immune surveillance allowing cancer cells to become invisible to the immune system and, in turn, promote cancer metastasis. Here we describe and validate the first high-throughput cell-based screening assay to identify chemical extracts and unique chemical entities that reverse the downregulation of APM components in cell lines derived from metastatic tumours.
View Article and Find Full Text PDFJ Antibiot (Tokyo)
April 2022
Departments of Medicine and Microbiology and Immunology, Life Sciences Institute, University of British Columbia, V6T 1Z3, Vancouver, BC, Canada.
Screening of a marine derived crude natural product extract library, followed by bioactivity guided fractionation, has led to isolation and structural elucidation of 10 natural products as hits active against Mycobacterium tuberculosis (Mtb). Among them, three (3, 4 and 5) were identified for the first time and the remaining 7 compounds (1, 2, 6, 7, 8, 9 and 10) were previously reported, but now assigned with anti-mycobacterial activity. Among identified hits, the oligo cyclic depsipeptide discodermin B (7) exhibited the highest potency with an MIC value of 0.
View Article and Find Full Text PDFMar Drugs
January 2018
State Key Laboratory of Natural and Biomimetic Drugs, Peking University, Beijing 100191, China.
Anti-biofilm assay guided fractionation of the marine sponge revealed the butanol soluble fraction that was possessing the inhibitory activity toward the biofilm formation of bacterium . Chromatographic separation of the bioactive fraction resulted in the isolation of 32 bromopyrrole alkaloids, including six new alkaloids, named stylisines A-F (-). The structures of new alkaloids were established by comprehensive analyses of the two-dimensional (2D) NMR (COSY, HMQC, and HMBC) and the high resolution electrospray ionization mass spectroscopy (HRESIMS) data, while the absolute configurations were determined by the X-ray diffraction and the electronic circular dichroism (ECD) data.
View Article and Find Full Text PDFChem Biodivers
February 2018
State Key Laboratory of Natural and Biomimetic Drugs, Peking University, Beijing, 100191, P. R. China.
Chemical examination of the bright yellow sponge Leucetta chagosensis resulted in the isolation of three new imidazole-based alkaloid complexes namely chagosendines A - C (1 - 3), together with known analogues pyronaamidine, naamidine J, and naamine C. Their structures were determined on the basis of extensive spectroscopic (IR, MS, NMR, and single-crystal X-ray diffraction) analysis in association with the chemical conversion. The isolated alkaloids together with three synthesized new homodimer complexes were evaluated for the cytotoxic activities against a panel of tumor cell lines.
View Article and Find Full Text PDFCladistics
December 2017
Department of Zoology, University of British Columbia, 6270 University Boulevard, Vancouver, BC, V6T 1Z4, Canada.
We present a phylogenetic analysis of spiders using a dataset of 932 spider species, representing 115 families (only the family Synaphridae is unrepresented), 700 known genera, and additional representatives of 26 unidentified or undescribed genera. Eleven genera of the orders Amblypygi, Palpigradi, Schizomida and Uropygi are included as outgroups. The dataset includes six markers from the mitochondrial (12S, 16S, COI) and nuclear (histone H3, 18S, 28S) genomes, and was analysed by multiple methods, including constrained analyses using a highly supported backbone tree from transcriptomic data.
View Article and Find Full Text PDFPhytoKeys
August 2016
Department of Botany & Microbiology, Ohio Wesleyan University, Delaware, Ohio 43015 USA.
Polyceratocarpus askhambryan-iringae, an endemic tree species of Annonaceae from the Udzungwa Mountains of Tanzania, is described and illustrated. The new species is identified as a member of the genus Polyceratocarpus by the combination of staminate and bisexual flowers, axillary inflorescences, subequal outer and inner petals, and multi-seeded monocarps with pitted seeds. From Polyceratocarpus scheffleri, with which it has previously been confused, it differs in the longer pedicels, smaller and thinner petals, shorter bracts, and by generally smaller, less curved monocarps that have a clear stipe and usually have fewer seeds.
View Article and Find Full Text PDFZootaxa
March 2016
Society for Southeast Asian Herpetology, Im Sand 3, D-69115 Heidelberg, Germany; Email:
The taxonomic status of three nominal species in the synonymy of the wide ranging Australo-Papuan snake Dendrelaphis calligaster (Günther, 1867) was investigated. Dendrophis meeki Boulenger, 1895 was shown to represent an insular population of D. gastrostictus instead of D.
View Article and Find Full Text PDFZootaxa
March 2014
Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil.; Email:
Eight new species of Paravelia Breddin, 1898 from Brazil are described and illustrated: P. amapaensis sp. nov.
View Article and Find Full Text PDFZootaxa
May 2014
Netherlands Centre for Biodiversity Naturalis, P.O.Box 9517 2300 RA Leiden, The Netherlands.; Email:
The genus Agelas comprises a group of tropical and subtropical reef sponges that contains large, long-lived, often brightly colored and conspicuous species, distributed throughout the tropica l western Atlantic, temperate northern Atlantic (Mediterranean Sea), and western and central Indo-Pacific Realms. Among tropical sponge genera, Agelas is one with similar species richness in the Greater Caribbean in comparison to the Indo Pacific. The presence of verticillated acanthostyle spicules and a fibroreticulate skeleton of spongin fibres cored and/or echinated by spicules characterize this group.
View Article and Find Full Text PDFJ Phycol
February 2014
Culture Collection of Algae and Protozoa (CCAP), The Scottish Association for Marine Science Dunstaffnage Marine Laboratory, Oban, Argyll, Scotland, PA37 1QA, UK.
The phylogeny of ligulate and sulfuric-acid containing species of Desmarestia, occurring worldwide from polar to temperate regions, was revised using a multigenic and polyphasic approach. Sequence data, gametophyte characteristics, and sporophyte morphology support reducing a total of 16 taxa to four different species. (1) D.
View Article and Find Full Text PDFJ Forensic Sci
May 2013
Netherlands Centre for Biodiversity Naturalis, NHN, Leiden University, P.O. Box 9514, Leiden, RA, 2300, The Netherlands.
Indian snakeroot (Rauvolfia serpentina) is a valuable forest product, root extracts of which are used as an antihypertensive drug. Increasing demand led to overharvesting in the wild. Control of international trade is hampered by the inability to identify root samples to the species level.
View Article and Find Full Text PDFBiodivers Data J
April 2014
Pensoft Publishers, Sofia, Bulgaria ; Institute of Biodiversity and Ecosystem Research, Sofia, Bulgaria.
J Fish Biol
November 2012
Netherlands Centre for Biodiversity Naturalis, RA Leiden, The Netherlands.
During 139 visits between March 2009 and May 2011, it was found that the availability of reef fishes at a local fish market in the Philippines was highly affected by the lunar cycle. The number of vendors selling reef fishes was significantly lower (13.4%) during third lunar quarters (full moon periods) than during the first, second and fourth lunar quarters (40.
View Article and Find Full Text PDFZookeys
August 2012
Netherlands Centre for Biodiversity Naturalis, P.O. Box 9517, 2300 RA Leiden, the Netherlands.
The status of the genus Bostryx is discussed and, based on morphological and molecular data, restricted to a group of species related to Bostryx solutus, for which the new subfamily name Bostrycinae is introduced.
View Article and Find Full Text PDFEnviron Toxicol Pharmacol
September 2012
Mauritius Oceanography Institute, France Centre, Quatre-Bornes, Mauritius. Electronic address:
The ocean is an exceptional source of natural products with many of them exhibiting novel structural features and bioactivity. As one of the most interesting phylum with respect to pharmacological active marine compounds, Poriferas have been investigated widely in the last few decades. A total of 60 organic extracts (hexane, ethyl acetate and butanol) from 20 species of marine sponges from Mauritius were screened at 50μg/ml in an in vitro screening assay against 9 human cancer cell lines.
View Article and Find Full Text PDFZookeys
August 2012
Department of Terrestrial Zoology, Netherlands Centre for Biodiversity Naturalis, Postbus 9517 2300RA Leiden, The Netherlands.
The family Eresidae C. L. Koch, 1850 is reviewed at the genus level.
View Article and Find Full Text PDFZookeys
August 2012
Netherlands Centre for Biodiversity Naturalis, P.O. Box 9517, Leiden, the Netherlands.
Type material of 41 Australian Bothriembryon taxa present in Australian museums is critically listed, indicating systematic issues that need to be resolved in further studies. Information on additional type material of 22 taxa in non-Australian museums is compiled. The seven fossil taxa known so far are included in this catalogue.
View Article and Find Full Text PDFPhytoKeys
August 2012
Netherlands Centre for Biodiversity Naturalis (section NHN), Biosystematics Group, Herbarium Vadense, Wageningen University, Generaal Foulkesweg 37, 6703 BL Wageningen, The Netherlands.
The taxonomic revision of the infrequently collected genus Tetrameranthus by Westra (1985) is updated. A new species is described from French Guiana and Amapá, Brazil, increasing the number of species in this genus to seven.
View Article and Find Full Text PDFPhytoKeys
August 2012
Netherlands Centre for Biodiversity Naturalis (section NHN), Leiden University, PO Box 9517, 2300 RA Leiden, The Netherlands.
The Asiatic species of Oleandra (Oleandraceae) are revised. We reduce a large number of species to Oleandra neriiformis and Oleandra sibbaldii, we provide a revised circumscription of Oleandra cumingii and Oleandra undulata and we establish the identity of Oleandra vulpina. In total, we recognize 9 species, with full synonymy, descriptions and distribution maps.
View Article and Find Full Text PDFPLoS One
September 2012
Netherlands Centre for Biodiversity Naturalis, Leiden, The Netherlands.
With the completion of a single unified classification, the Systema Porifera (SP) and subsequent development of an online species database, the World Porifera Database (WPD), we are now equipped to provide a first comprehensive picture of the global biodiversity of the Porifera. An introductory overview of the four classes of the Porifera is followed by a description of the structure of our main source of data for this paper, the WPD. From this we extracted numbers of all 'known' sponges to date: the number of valid Recent sponges is established at 8,553, with the vast majority, 83%, belonging to the class Demospongiae.
View Article and Find Full Text PDFZookeys
August 2012
Netherlands Centre for Biodiversity Naturalis, P.O. Box 9517, Leiden, the Netherlands.
The type status is described for specimens of 84 taxa classified within the families Bothriembryontidae and Odontostomidae (superfamily Orthalicoidea) and kept in the Natural History Museum, London. Lectotypes are designated for Bulimus (Liparus) brazieri Angas, 1871; Bulimus broderipii Sowerby I, 1832; Bulimus fuligineus Pfeiffer, 1853; Helix guarani d'Orbigny, 1835; Bulimus (Tomigerus) ramagei E.A.
View Article and Find Full Text PDFCladistics
April 2012
Netherlands Centre for Biodiversity Naturalis (section NHN), Leiden University, PO Box 9517, 2300 RA Leiden, The Netherlands E-mail address:
BMC Genomics
March 2012
Netherlands Centre for Biodiversity Naturalis, PO Box 9517, Leiden RA 2300, The Netherlands.
Background: This study describes how the complete mitogenome of a terrestrial snail, Cylindrus obtusus (Draparnaud, 1805) was sequenced without PCRs from a collection specimen that had been in 70% ethanol for 8 years. The mitogenome was obtained with Illumina GAIIx shot gun sequencing. Although the used specimen was collected relatively recently and kept in a DNA-friendly preservative (not formalin as frequently used with old museum specimens), we believe that the exclusion of PCRs as facilitated by NGS (Next Generation Sequencing) removes a great obstacle in DNA sequencing of collection specimens.
View Article and Find Full Text PDFFungal Biol
March 2012
National Herbarium of the Netherlands, Netherlands Centre for Biodiversity Naturalis, Leiden University, Einsteinweg 2, 2300 RA Leiden, The Netherlands.
Species of the genus Lichenomphalia are mostly restricted to arctic-alpine environments with the exception of Lichenomphalia umbellifera which is also common in northern forests. Although Lichenomphalia species inhabit vast regions in several continents, no information is available on their genetic variation across geographic regions and the underlying population-phylogenetic patterns. We collected samples from arctic and subarctic regions, as well as from newly discovered subantarctic localities for the genus.
View Article and Find Full Text PDFMar Drugs
January 2012
Key Laboratory of Marine Drugs, Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, China.
Four new bisabolane-type sesquiterpenoids, aspergiterpenoid A (1), (-)-sydonol (2), (-)-sydonic acid (3), and (-)-5-(hydroxymethyl)-2-(2',6',6'-trimethyltetrahydro-2H- pyran-2-yl)phenol (4) together with one known fungal metabolite (5) were isolated from the fermentation broth of a marine-derived fungus Aspergillus sp., which was isolated from the sponge Xestospongia testudinaria collected from the South China Sea. Four of them (1-4) are optically active compounds.
View Article and Find Full Text PDF