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Netherlands Centre for Biodiversity Nat... Publications | LitMetric

47 results match your criteria: "Netherlands Centre for Biodiversity Naturalis[Affiliation]"

Genetic and epigenetic events have been implicated in the downregulation of the cellular antigen processing and presentation machinery (APM), which in turn, has been associated with cancer evasion of the immune system. When these essential components are lacking, cancers develop the ability to subvert host immune surveillance allowing cancer cells to become invisible to the immune system and, in turn, promote cancer metastasis. Here we describe and validate the first high-throughput cell-based screening assay to identify chemical extracts and unique chemical entities that reverse the downregulation of APM components in cell lines derived from metastatic tumours.

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Screening of a marine derived crude natural product extract library, followed by bioactivity guided fractionation, has led to isolation and structural elucidation of 10 natural products as hits active against Mycobacterium tuberculosis (Mtb). Among them, three (3, 4 and 5) were identified for the first time and the remaining 7 compounds (1, 2, 6, 7, 8, 9 and 10) were previously reported, but now assigned with anti-mycobacterial activity. Among identified hits, the oligo cyclic depsipeptide discodermin B (7) exhibited the highest potency with an MIC value of 0.

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Anti-biofilm assay guided fractionation of the marine sponge revealed the butanol soluble fraction that was possessing the inhibitory activity toward the biofilm formation of bacterium . Chromatographic separation of the bioactive fraction resulted in the isolation of 32 bromopyrrole alkaloids, including six new alkaloids, named stylisines A-F (-). The structures of new alkaloids were established by comprehensive analyses of the two-dimensional (2D) NMR (COSY, HMQC, and HMBC) and the high resolution electrospray ionization mass spectroscopy (HRESIMS) data, while the absolute configurations were determined by the X-ray diffraction and the electronic circular dichroism (ECD) data.

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Chemical examination of the bright yellow sponge Leucetta chagosensis resulted in the isolation of three new imidazole-based alkaloid complexes namely chagosendines A - C (1 - 3), together with known analogues pyronaamidine, naamidine J, and naamine C. Their structures were determined on the basis of extensive spectroscopic (IR, MS, NMR, and single-crystal X-ray diffraction) analysis in association with the chemical conversion. The isolated alkaloids together with three synthesized new homodimer complexes were evaluated for the cytotoxic activities against a panel of tumor cell lines.

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We present a phylogenetic analysis of spiders using a dataset of 932 spider species, representing 115 families (only the family Synaphridae is unrepresented), 700 known genera, and additional representatives of 26 unidentified or undescribed genera. Eleven genera of the orders Amblypygi, Palpigradi, Schizomida and Uropygi are included as outgroups. The dataset includes six markers from the mitochondrial (12S, 16S, COI) and nuclear (histone H3, 18S, 28S) genomes, and was analysed by multiple methods, including constrained analyses using a highly supported backbone tree from transcriptomic data.

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Polyceratocarpus askhambryan-iringae, an endemic tree species of Annonaceae from the Udzungwa Mountains of Tanzania, is described and illustrated. The new species is identified as a member of the genus Polyceratocarpus by the combination of staminate and bisexual flowers, axillary inflorescences, subequal outer and inner petals, and multi-seeded monocarps with pitted seeds. From Polyceratocarpus scheffleri, with which it has previously been confused, it differs in the longer pedicels, smaller and thinner petals, shorter bracts, and by generally smaller, less curved monocarps that have a clear stipe and usually have fewer seeds.

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On the status of three nominal species in the synonymy of Dendrelaphis calligaster (Günther, 1867) (Serpentes: Colubridae).

Zootaxa

March 2016

Society for Southeast Asian Herpetology, Im Sand 3, D-69115 Heidelberg, Germany; Email:

The taxonomic status of three nominal species in the synonymy of the wide ranging Australo-Papuan snake Dendrelaphis calligaster (Günther, 1867) was investigated. Dendrophis meeki Boulenger, 1895 was shown to represent an insular population of D. gastrostictus instead of D.

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The genus Paravelia Breddin, 1898 (Hemiptera: Heteroptera: Veliidae) in Brazil, with descriptions of eight new species.

Zootaxa

March 2014

Programa de Pós-Graduação em Ecologia e Conservação, Universidade do Estado de Mato Grosso, Nova Xavantina, Brazil.; Email:

Eight new species of Paravelia Breddin, 1898 from Brazil are described and illustrated: P. amapaensis sp. nov.

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The genus Agelas comprises a group of tropical and subtropical reef sponges that contains large, long-lived, often brightly colored and conspicuous species, distributed throughout the tropica l western Atlantic, temperate northern Atlantic (Mediterranean Sea), and western and central Indo-Pacific Realms. Among tropical sponge genera, Agelas is one with similar species richness in the Greater Caribbean in comparison to the Indo Pacific. The presence of verticillated acanthostyle spicules and a fibroreticulate skeleton of spongin fibres cored and/or echinated by spicules characterize this group.

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Ligulate Desmarestia (Desmarestiales, Phaeophyceae) revisited: D. japonica sp. nov. and D. dudresnayi differ from D. ligulata.

J Phycol

February 2014

Culture Collection of Algae and Protozoa (CCAP), The Scottish Association for Marine Science Dunstaffnage Marine Laboratory, Oban, Argyll, Scotland, PA37 1QA, UK.

The phylogeny of ligulate and sulfuric-acid containing species of Desmarestia, occurring worldwide from polar to temperate regions, was revised using a multigenic and polyphasic approach. Sequence data, gametophyte characteristics, and sporophyte morphology support reducing a total of 16 taxa to four different species. (1) D.

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Forensic identification of Indian snakeroot (Rauvolfia serpentina Benth. ex Kurz) using DNA barcoding.

J Forensic Sci

May 2013

Netherlands Centre for Biodiversity Naturalis, NHN, Leiden University, P.O. Box 9514, Leiden, RA, 2300, The Netherlands.

Indian snakeroot (Rauvolfia serpentina) is a valuable forest product, root extracts of which are used as an antihypertensive drug. Increasing demand led to overharvesting in the wild. Control of international trade is hampered by the inability to identify root samples to the species level.

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During 139 visits between March 2009 and May 2011, it was found that the availability of reef fishes at a local fish market in the Philippines was highly affected by the lunar cycle. The number of vendors selling reef fishes was significantly lower (13.4%) during third lunar quarters (full moon periods) than during the first, second and fourth lunar quarters (40.

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The status of the genus Bostryx is discussed and, based on morphological and molecular data, restricted to a group of species related to Bostryx solutus, for which the new subfamily name Bostrycinae is introduced.

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The ocean is an exceptional source of natural products with many of them exhibiting novel structural features and bioactivity. As one of the most interesting phylum with respect to pharmacological active marine compounds, Poriferas have been investigated widely in the last few decades. A total of 60 organic extracts (hexane, ethyl acetate and butanol) from 20 species of marine sponges from Mauritius were screened at 50μg/ml in an in vitro screening assay against 9 human cancer cell lines.

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The family Eresidae C. L. Koch, 1850 is reviewed at the genus level.

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Type material of 41 Australian Bothriembryon taxa present in Australian museums is critically listed, indicating systematic issues that need to be resolved in further studies. Information on additional type material of 22 taxa in non-Australian museums is compiled. The seven fossil taxa known so far are included in this catalogue.

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Tetrameranthus (Annonaceae) revisited including a new species.

PhytoKeys

August 2012

Netherlands Centre for Biodiversity Naturalis (section NHN), Biosystematics Group, Herbarium Vadense, Wageningen University, Generaal Foulkesweg 37, 6703 BL Wageningen, The Netherlands.

The taxonomic revision of the infrequently collected genus Tetrameranthus by Westra (1985) is updated. A new species is described from French Guiana and Amapá, Brazil, increasing the number of species in this genus to seven.

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A revision of the fern genus Oleandra (Oleandraceae) in Asia.

PhytoKeys

August 2012

Netherlands Centre for Biodiversity Naturalis (section NHN), Leiden University, PO Box 9517, 2300 RA Leiden, The Netherlands.

The Asiatic species of Oleandra (Oleandraceae) are revised. We reduce a large number of species to Oleandra neriiformis and Oleandra sibbaldii, we provide a revised circumscription of Oleandra cumingii and Oleandra undulata and we establish the identity of Oleandra vulpina. In total, we recognize 9 species, with full synonymy, descriptions and distribution maps.

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With the completion of a single unified classification, the Systema Porifera (SP) and subsequent development of an online species database, the World Porifera Database (WPD), we are now equipped to provide a first comprehensive picture of the global biodiversity of the Porifera. An introductory overview of the four classes of the Porifera is followed by a description of the structure of our main source of data for this paper, the WPD. From this we extracted numbers of all 'known' sponges to date: the number of valid Recent sponges is established at 8,553, with the vast majority, 83%, belonging to the class Demospongiae.

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The type status is described for specimens of 84 taxa classified within the families Bothriembryontidae and Odontostomidae (superfamily Orthalicoidea) and kept in the Natural History Museum, London. Lectotypes are designated for Bulimus (Liparus) brazieri Angas, 1871; Bulimus broderipii Sowerby I, 1832; Bulimus fuligineus Pfeiffer, 1853; Helix guarani d'Orbigny, 1835; Bulimus (Tomigerus) ramagei E.A.

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Syncretism and corroboration.

Cladistics

April 2012

Netherlands Centre for Biodiversity Naturalis (section NHN), Leiden University, PO Box 9517, 2300 RA Leiden, The Netherlands E-mail address:

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Background: This study describes how the complete mitogenome of a terrestrial snail, Cylindrus obtusus (Draparnaud, 1805) was sequenced without PCRs from a collection specimen that had been in 70% ethanol for 8 years. The mitogenome was obtained with Illumina GAIIx shot gun sequencing. Although the used specimen was collected relatively recently and kept in a DNA-friendly preservative (not formalin as frequently used with old museum specimens), we believe that the exclusion of PCRs as facilitated by NGS (Next Generation Sequencing) removes a great obstacle in DNA sequencing of collection specimens.

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Frequent circumarctic and rare transequatorial dispersals in the lichenised agaric genus Lichenomphalia (Hygrophoraceae, Basidiomycota).

Fungal Biol

March 2012

National Herbarium of the Netherlands, Netherlands Centre for Biodiversity Naturalis, Leiden University, Einsteinweg 2, 2300 RA Leiden, The Netherlands.

Species of the genus Lichenomphalia are mostly restricted to arctic-alpine environments with the exception of Lichenomphalia umbellifera which is also common in northern forests. Although Lichenomphalia species inhabit vast regions in several continents, no information is available on their genetic variation across geographic regions and the underlying population-phylogenetic patterns. We collected samples from arctic and subarctic regions, as well as from newly discovered subantarctic localities for the genus.

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Antibacterial bisabolane-type sesquiterpenoids from the sponge-derived fungus Aspergillus sp.

Mar Drugs

January 2012

Key Laboratory of Marine Drugs, Ministry of Education, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, China.

Four new bisabolane-type sesquiterpenoids, aspergiterpenoid A (1), (-)-sydonol (2), (-)-sydonic acid (3), and (-)-5-(hydroxymethyl)-2-(2',6',6'-trimethyltetrahydro-2H- pyran-2-yl)phenol (4) together with one known fungal metabolite (5) were isolated from the fermentation broth of a marine-derived fungus Aspergillus sp., which was isolated from the sponge Xestospongia testudinaria collected from the South China Sea. Four of them (1-4) are optically active compounds.

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