Immunity-driven evolution of virulence and diversity in respiratory diseases.

The time-honored paradigm in the theory of virulence evolution assumes a positive relation between infectivity and harmfulness. However, the etiology of respiratory diseases yields a negative relation, with diseases of the lower respiratory tract being less infective and more harmful. We explore the evolutionary consequences in a simple model incorporating cross-immunity between disease strains that diminishes with their distance in the respiratory tract, assuming that docking rate follows the match between the local mix of cell surface types and the pathogen's surface and cross-immunity the similarity of the pathogens' surfaces.

A novel cell-based screen identifies chemical entities that reverse the immune-escape phenotype of metastatic tumours.

Genetic and epigenetic events have been implicated in the downregulation of the cellular antigen processing and presentation machinery (APM), which in turn, has been associated with cancer evasion of the immune system. When these essential components are lacking, cancers develop the ability to subvert host immune surveillance allowing cancer cells to become invisible to the immune system and, in turn, promote cancer metastasis. Here we describe and validate the first high-throughput cell-based screening assay to identify chemical extracts and unique chemical entities that reverse the downregulation of APM components in cell lines derived from metastatic tumours.

Screening of diverse marine invertebrate extracts identified Lissoclinotoxin F, Discodermin B, and other anti-Mycobacterium tuberculosis active compounds.

Screening of a marine derived crude natural product extract library, followed by bioactivity guided fractionation, has led to isolation and structural elucidation of 10 natural products as hits active against Mycobacterium tuberculosis (Mtb). Among them, three (3, 4 and 5) were identified for the first time and the remaining 7 compounds (1, 2, 6, 7, 8, 9 and 10) were previously reported, but now assigned with anti-mycobacterial activity. Among identified hits, the oligo cyclic depsipeptide discodermin B (7) exhibited the highest potency with an MIC value of 0.

Environmental dimensionality determines species coexistence.

According to the competitive-exclusion principle, the number n of regulating variables describing a given community dynamics is an upper bound on the number of species (or types or morphs) that can coexist at equilibrium. On occasion, it is possible to reformulate a model with a lower number of regulating variables than appeared in the initial specification. We call the smallest number of such variables the dimension of the environmental feedback, or environmental dimension for short.

Beyond R Maximisation: On Pathogen Evolution and Environmental Dimensions.

A widespread tenet is that evolution of pathogens maximises their basic reproduction ratio, R. The breakdown of this principle is typically discussed as exception. Here, we argue that a radically different stance is needed, based on evolutionarily stable strategy (ESS) arguments that take account of the 'dimension of the environmental feedback loop'.

Bromopyrrole Alkaloids with the Inhibitory Effects against the Biofilm Formation of Gram Negative Bacteria.

Anti-biofilm assay guided fractionation of the marine sponge revealed the butanol soluble fraction that was possessing the inhibitory activity toward the biofilm formation of bacterium . Chromatographic separation of the bioactive fraction resulted in the isolation of 32 bromopyrrole alkaloids, including six new alkaloids, named stylisines A-F (-). The structures of new alkaloids were established by comprehensive analyses of the two-dimensional (2D) NMR (COSY, HMQC, and HMBC) and the high resolution electrospray ionization mass spectroscopy (HRESIMS) data, while the absolute configurations were determined by the X-ray diffraction and the electronic circular dichroism (ECD) data.

Chagosendines A - C, New Metal Complexes of Imidazole Alkaloids from the Calcareous Sponge Leucetta chagosensis.

Chemical examination of the bright yellow sponge Leucetta chagosensis resulted in the isolation of three new imidazole-based alkaloid complexes namely chagosendines A - C (1 - 3), together with known analogues pyronaamidine, naamidine J, and naamine C. Their structures were determined on the basis of extensive spectroscopic (IR, MS, NMR, and single-crystal X-ray diffraction) analysis in association with the chemical conversion. The isolated alkaloids together with three synthesized new homodimer complexes were evaluated for the cytotoxic activities against a panel of tumor cell lines.

The spider tree of life: phylogeny of Araneae based on target-gene analyses from an extensive taxon sampling.

We present a phylogenetic analysis of spiders using a dataset of 932 spider species, representing 115 families (only the family Synaphridae is unrepresented), 700 known genera, and additional representatives of 26 unidentified or undescribed genera. Eleven genera of the orders Amblypygi, Palpigradi, Schizomida and Uropygi are included as outgroups. The dataset includes six markers from the mitochondrial (12S, 16S, COI) and nuclear (histone H3, 18S, 28S) genomes, and was analysed by multiple methods, including constrained analyses using a highly supported backbone tree from transcriptomic data.

A new species in the tree genus Polyceratocarpus (Annonaceae) from the Udzungwa Mountains of Tanzania.

Polyceratocarpus askhambryan-iringae, an endemic tree species of Annonaceae from the Udzungwa Mountains of Tanzania, is described and illustrated. The new species is identified as a member of the genus Polyceratocarpus by the combination of staminate and bisexual flowers, axillary inflorescences, subequal outer and inner petals, and multi-seeded monocarps with pitted seeds. From Polyceratocarpus scheffleri, with which it has previously been confused, it differs in the longer pedicels, smaller and thinner petals, shorter bracts, and by generally smaller, less curved monocarps that have a clear stipe and usually have fewer seeds.

On the status of three nominal species in the synonymy of Dendrelaphis calligaster (Günther, 1867) (Serpentes: Colubridae).

The taxonomic status of three nominal species in the synonymy of the wide ranging Australo-Papuan snake Dendrelaphis calligaster (Günther, 1867) was investigated. Dendrophis meeki Boulenger, 1895 was shown to represent an insular population of D. gastrostictus instead of D.

Epidemiological, evolutionary, and economic determinants of eradication tails.

Despite modern medical interventions, infectious diseases continue to generate huge socio-economic losses. The benefits of eradicating a disease are therefore high. While successful with smallpox and rinderpest, many other eradication attempts have failed.

Mutual invadability near evolutionarily singular strategies for multivariate traits, with special reference to the strongly convergence stable case.

Over the last two decades evolutionary branching has emerged as a possible mathematical paradigm for explaining the origination of phenotypic diversity. Although branching is well understood for one-dimensional trait spaces, a similarly detailed understanding for higher dimensional trait spaces is sadly lacking. This note aims at getting a research program of the ground leading to such an understanding.

The genus Paravelia Breddin, 1898 (Hemiptera: Heteroptera: Veliidae) in Brazil, with descriptions of eight new species.

Eight new species of Paravelia Breddin, 1898 from Brazil are described and illustrated: P. amapaensis sp. nov.

Reef sponges of the genus Agelas (Porifera: Demospongiae) from the Greater Caribbean.

The genus Agelas comprises a group of tropical and subtropical reef sponges that contains large, long-lived, often brightly colored and conspicuous species, distributed throughout the tropica l western Atlantic, temperate northern Atlantic (Mediterranean Sea), and western and central Indo-Pacific Realms. Among tropical sponge genera, Agelas is one with similar species richness in the Greater Caribbean in comparison to the Indo Pacific. The presence of verticillated acanthostyle spicules and a fibroreticulate skeleton of spongin fibres cored and/or echinated by spicules characterize this group.

Ligulate Desmarestia (Desmarestiales, Phaeophyceae) revisited: D. japonica sp. nov. and D. dudresnayi differ from D. ligulata.

The phylogeny of ligulate and sulfuric-acid containing species of Desmarestia, occurring worldwide from polar to temperate regions, was revised using a multigenic and polyphasic approach. Sequence data, gametophyte characteristics, and sporophyte morphology support reducing a total of 16 taxa to four different species. (1) D.

Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa).

On the basis of morphological differences, three subspecies of Black-tailed Godwit (Limosa limosa) have been recognized (L. l. limosa, L.

Forensic identification of Indian snakeroot (Rauvolfia serpentina Benth. ex Kurz) using DNA barcoding.

Indian snakeroot (Rauvolfia serpentina) is a valuable forest product, root extracts of which are used as an antihypertensive drug. Increasing demand led to overharvesting in the wild. Control of international trade is hampered by the inability to identify root samples to the species level.

The lunar cycle determines availability of coral-reef fishes at fish markets.

During 139 visits between March 2009 and May 2011, it was found that the availability of reef fishes at a local fish market in the Philippines was highly affected by the lunar cycle. The number of vendors selling reef fishes was significantly lower (13.4%) during third lunar quarters (full moon periods) than during the first, second and fourth lunar quarters (40.

The status of the genus Bostryx Troschel, 1847, with description of a new subfamily (Mollusca, Gastropoda, Bulimulidae).

The status of the genus Bostryx is discussed and, based on morphological and molecular data, restricted to a group of species related to Bostryx solutus, for which the new subfamily name Bostrycinae is introduced.

Cytotoxic activities of hexane, ethyl acetate and butanol extracts of marine sponges from Mauritian Waters on human cancer cell lines.

The ocean is an exceptional source of natural products with many of them exhibiting novel structural features and bioactivity. As one of the most interesting phylum with respect to pharmacological active marine compounds, Poriferas have been investigated widely in the last few decades. A total of 60 organic extracts (hexane, ethyl acetate and butanol) from 20 species of marine sponges from Mauritius were screened at 50μg/ml in an in vitro screening assay against 9 human cancer cell lines.

The velvet spiders: an atlas of the Eresidae (Arachnida, Araneae).

The family Eresidae C. L. Koch, 1850 is reviewed at the genus level.

Annotated type catalogue of Bothriembryon (Mollusca, Gastropoda, Orthalicoidea) in Australian museums, with a compilation of types in other museums.

Type material of 41 Australian Bothriembryon taxa present in Australian museums is critically listed, indicating systematic issues that need to be resolved in further studies. Information on additional type material of 22 taxa in non-Australian museums is compiled. The seven fossil taxa known so far are included in this catalogue.

Tetrameranthus (Annonaceae) revisited including a new species.

The taxonomic revision of the infrequently collected genus Tetrameranthus by Westra (1985) is updated. A new species is described from French Guiana and Amapá, Brazil, increasing the number of species in this genus to seven.

A revision of the fern genus Oleandra (Oleandraceae) in Asia.

The Asiatic species of Oleandra (Oleandraceae) are revised. We reduce a large number of species to Oleandra neriiformis and Oleandra sibbaldii, we provide a revised circumscription of Oleandra cumingii and Oleandra undulata and we establish the identity of Oleandra vulpina. In total, we recognize 9 species, with full synonymy, descriptions and distribution maps.