1,716 results match your criteria: "Naturalis Biodiversity Center; P.O. Box 9617 2300 RA Leiden. rob.vansoest@naturalis.nl.[Affiliation]"

Three new species of Brèthes, 1913 ( , and ) are described and illustrated. (Fischer, 1959) is a new combination and a new synonym of (Fischer, 1963), An identification key to the species of known from South Korea is provided.

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  • * A new online portal has been developed to provide up-to-date global distribution data for crayfish and their pathogens, improving accessibility and management decisions.
  • * This database is publicly available, allowing users to easily view, embed, and download data, aiming to enhance conservation planning and biodiversity management in the future.
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Automatic detection for bioacoustic research: a practical guide from and for biologists and computer scientists.

Biol Rev Camb Philos Soc

October 2024

Behavioural Ecology Research Group, School of Life Sciences, Anglia Ruskin University, East Road, Cambridge, CB1 1PT, UK.

Article Synopsis
  • * Advances in computing and machine learning offer solutions for automatic analysis of acoustic data, but the field is still developing and faces challenges in bridging the gap between biology and technology.
  • * This review outlines trends in bioacoustic PAM, introduces machine learning applications, and offers a practical guide for researchers on building automatic detection systems while highlighting future directions in the field.
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  • * Analysis of data from over 1 million forest plots and thousands of tree species shows that wood density varies significantly by latitude, being up to 30% denser in tropical forests compared to boreal forests, and is influenced mainly by temperature and soil moisture.
  • * The research also finds that disturbances like human activity and fire alter wood density at local levels, affecting forest carbon stock estimates by up to 21%, emphasizing the importance of understanding environmental impacts on forest ecosystems.
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It remains unknown how species' populations across their geographic range are constrained by multiple coincident natural and anthropogenic environmental gradients. Conservation actions are likely undermined without this knowledge because the relative importance of the multiple anthropogenic threats is not set within the context of the natural determinants of species' distributions. We introduce the concept of a species 'shadow distribution' to address this knowledge gap, using explainable artificial intelligence to deconstruct the environmental building blocks of current species distributions.

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Tree growth and longevity trade-offs fundamentally shape the terrestrial carbon balance. Yet, we lack a unified understanding of how such trade-offs vary across the world's forests. By mapping life history traits for a wide range of species across the Americas, we reveal considerable variation in life expectancies from 10 centimeters in diameter (ranging from 1.

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We describe the geographical variation in tree species composition across Amazonian forests and show how environmental conditions are associated with species turnover. Our analyses are based on 2023 forest inventory plots (1 ha) that provide abundance data for a total of 5188 tree species. Within-plot species composition reflected both local environmental conditions (especially soil nutrients and hydrology) and geographical regions.

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Contemporary intergeneric hybridization and backcrossing among birds-of-paradise.

Evol Lett

September 2024

Department of Bioinformatics and Genetics, Swedish Museum of Natural History, Stockholm, Sweden.

Despite large differences in morphology, behavior and lek-mating strategies the birds-of-paradise are known to hybridize occasionally, even across different genera. Many of these bird-of-paradise hybrids were originally described as distinct species based on large morphological differences when compared to recognized species. Nowadays, these specimens are generally recognized as hybrids based on morphological assessments.

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Muscle-controlled physics simulations of bird locomotion resolve the grounded running paradox.

Sci Adv

September 2024

Department of Musculoskeletal and Ageing Science, Institute of Life Course & Medical Sciences, University of Liverpool, The William Henry Duncan Building, 6 West Derby Street, Liverpool L7 8TX, UK.

Humans and birds use very different running styles. Unlike humans, birds adopt "grounded running" at intermediate speeds-a running gait where at least one foot always maintains ground contact. Avian grounded running is a paradox: Animals usually minimize locomotor energy expenditure, but birds prefer grounded running despite incurring higher energy costs.

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  • A genomic database encompassing all eukaryotic species on Earth is crucial for scientific advancements, yet most species lack genomic data.
  • The Earth BioGenome Project (EBP) was initiated in 2018 by global scientists to compile high-quality reference genomes for approximately 1.5 million recognized eukaryotic species.
  • The European Reference Genome Atlas (ERGA) launched a Pilot Project to create a decentralized model for reference genome production by testing it on 98 species, providing valuable insights into scalability, equity, and inclusiveness for genomic projects.
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Building a Portuguese coalition for biodiversity genomics.

NPJ Biodivers

September 2024

CE3C-Centre for Ecology, Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute, Faculdade de Ciências, Universidade de Lisboa, Campo Grande, 1749-016, Lisbon, Portugal.

Article Synopsis
  • Portugal has a lot of different plants and animals because of its unique geography and history, but these species are in danger from things like climate change and over-exploitation.
  • Researchers in Portugal are working together through a project called Biogenome Portugal to study and document biodiversity, which means looking closely at the genes of different species.
  • The goal is to create a library of genetic information to help protect endangered species and promote conservation efforts in Portugal, especially for unique plants and animals found only there.
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Increased incidences of cervical ribs in deer indicate extinction risk.

Proc Natl Acad Sci U S A

September 2024

Naturalis Biodiversity Center, Division Vertebrate Evolution, Development and Ecology, Darwinweg 2, Leiden 2333 CR, The Netherlands.

Mammals as a rule have seven cervical vertebrae, a number which remains remarkably conserved. Occasional deviations of this number are usually due to the presence of cervical ribs on the seventh vertebra, indicating a homeotic transformation from a cervical rib-less vertebra into a thoracic rib-bearing vertebra. These transformations are often associated with major congenital abnormalities or pediatric cancers (pleiotropic effects) that are, at least in humans, strongly selected against.

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Controlling crop pests while conserving pollinators is challenging, particularly when prophylactically applying broad-spectrum, systemic insecticides such as neonicotinoids. Systemic insecticides are often used in conventional agriculture in commercial settings, but the conditions that optimally balance pest management and pollination are poorly understood. We investigated how insecticide application strategies control pests and expose pollinators to insecticides with an observational study of cucurbit crops in the Midwestern United States.

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How extravagant ornamental traits evolve is a key question in evolutionary biology. Bird plumages are among the most elaborate ornaments, displaying almost all colours of the rainbow. Why and how birds evolved to be so colourful remains an open question with multiple and sometimes competing hypotheses.

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Background: Two Southeast Asian spider collections: that of Frances and John Murphy, now in the Manchester University Museum and the Deeleman collection, now at the Naturalis Biodiversity Center in Leiden constituted the basis of this analysis of Thorell, 1887 and related genera. The latter collection also includes many thousands of spiders obtained by canopy fogging for an ecological project in Borneo by A. Floren.

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Development and validation of an experimental life support system to study coral reef microbial communities.

Sci Rep

September 2024

Centre for Environmental and Marine Studies (CESAM) and Department of Biology, University of Aveiro, Campus Universitário Santiago, 3810-193, Aveiro, Portugal.

In the present study, we developed and validated an experimental life support system (ELSS) designed to investigate coral reef associated bacterial communities. The microcosms in the ELSS consisted of coral reef sediment, synthetic seawater, and specimens of five benthic reef species. These included two hard corals Montipora digitata and Montipora capricornis, a soft coral Sarcophyton glaucum, a zoanthid Zoanthus sp.

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Migratory herbivorous waterfowl track multiple resource waves during spring migration.

Proc Biol Sci

January 2024

Department of Earth System Science, Ministry of Education Field Research Station for East Asian Migratory Birds, Tsinghua University, Beijing 100086, People's Republic of China.

East Asian herbivorous waterfowl intensively use farmland in spring, next to their natural habitat. Accordingly, they might have expanded their migration strategy from merely tracking the green wave of newly emerging vegetation to also incorporating the availability of post-harvest agricultural seeds (here dubbed the seed wave). However, if and how waterfowl use multiple food resources to time their seasonal migration is still unknown.

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We present the Eindhoven Wildflower Dataset (EWD) as well as a PyTorch object detection model that is able to classify and count wildflowers. EWD, collected over two entire flowering seasons and expert annotated, contains 2,002 top-view images of flowering plants captured 'in the wild' in five different landscape types (roadsides, urban green spaces, cropland, weed-rich grassland, marshland). It holds a total of 65,571 annotations for 160 species belonging to 31 different families of flowering plants and serves as a reference dataset for automating wildflower monitoring and object detection in general.

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Orchidaceae is one of the most prominent flowering plant families, with many species exhibiting highly specialized reproductive and ecological adaptations. An estimated 10% of orchid species in the American tropics are pollinated by scent-collecting male euglossine bees; however, to date, there are no published genomes of species within this pollination syndrome. In this study, we present the first draft genome of an epiphytic orchid from the genus Gongora, a representative of the male euglossine bee-pollinated subtribe Stanhopeinae.

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Article Synopsis
  • Humans are changing habitats and affecting climate, which is causing many species to decline and lose their ability to adapt to new environments.
  • To help these species survive, scientists often breed or release individuals back into the wild, but they need to study their genetics closely to know which ones will fit best in specific locations.
  • This study focuses on the common midwife toad in Europe, using advanced genetic tools to understand how to choose the best toads to help populations thrive without harming their local adaptations.
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The genome sequence of the marbled rockcod, Richardson, 1844.

Wellcome Open Res

April 2024

British Antarctic Survey, NERC, Cambridge, England, UK.

We present a genome assembly from an individual (the marbled rockcod; Chordata; Actinopterygii; Perciformes; Nototheniidae). The genome sequence is 1,042.9 megabases in span.

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A molecular phylogeny of the Petaluridae (Odonata: Anisoptera): A 160-Million-Year-Old story of drift and extinction.

Mol Phylogenet Evol

November 2024

American Museum of Natural History, Department of Invertebrate Zoology, New York, 10024.

Petaluridae (Odonata: Anisoptera) is a relict dragonfly family, having diverged from its sister family in the Jurassic, of eleven species that are notable among odonates (dragonflies and damselflies) for their exclusive use of fen and bog habitats, their burrowing behavior as nymphs, large body size as adults, and extended lifespans. To date, several nodes within this family remain unresolved, limiting the study of the evolution of this peculiar family. Using an anchored hybrid enrichment dataset of over 900 loci we reconstructed the species tree of Petaluridae.

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  • Salvia hispanica L. (Chia) is an important crop in Mesoamerica, valued for its nutritional benefits linked to fatty acids in its seeds; varieties include Chia pinta (mixed white and black) and Chia negra (black).
  • Researchers created a detailed genome assembly of the Chia pinta variety and compared it with an existing Chia negra genome, finding high genetic similarity and identifying more terpene synthase genes in Chia pinta.
  • The study also sequenced 20 different Chia accessions based on seed color and origin, shedding light on the population structure and complex evolutionary history of the Salvia genus, which includes evidence of hybridization between species.
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The megadiverse plant family Asteraceae forms an iconic component of island floras including many spectacular radiations, but a global picture of its insular diversity is lacking. Here, we uncover the global biogeographical and evolutionary patterns of Asteraceae on islands to reveal the magnitude and potential causes of their evolutionary success. We compile a global checklist of Asteraceae species native and endemic to islands and combine it with macroecological analyses and a phylogenetic review of island radiations.

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