897 results match your criteria: "National University of Singapore NUS.[Affiliation]"

Emerging Role of Natriuretic Peptides in Diabetes Care: A Brief Review of Pertinent Recent Literature.

Diagnostics (Basel)

October 2024

Department of Laboratory Medicine, Changi General Hospital, Singapore 529889, Singapore.

Diabetes markedly increases susceptibility to adverse cardiovascular events, including heart failure (HF), leading to heightened morbidity and mortality rates. Elevated levels of natriuretic peptides (NPs), notably B-type natriuretic peptide (BNP) and N-terminal-proBNP (NT-proBNP), correlate with cardiac structural and functional abnormalities, aiding in risk stratification and treatment strategies in individuals with diabetes. This article reviews the intricate relationship between diabetes and HF, emphasizing the role of NPs in risk assessment and guiding therapeutic strategies, particularly in individuals with type 2 diabetes mellitus (T2DM).

View Article and Find Full Text PDF

Interpretable spatially aware dimension reduction of spatial transcriptomics with STAMP.

Nat Methods

November 2024

Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.

Article Synopsis
  • STOMP is a new method for analyzing spatial transcriptomics data that simplifies complex information into meaningful, low-dimensional representations.
  • It utilizes a deep generative model to identify spatial patterns and gene modules that are biologically relevant, enhancing the interpretation of data like lung cancer samples and mouse embryonic development.
  • The method is highly scalable, capable of analyzing datasets with over 500,000 cells, making it versatile for various biological studies.
View Article and Find Full Text PDF

Identifying effective evolutionary strategies-based protocol for uncovering reaction kinetic parameters under the effect of measurement noises.

BMC Biol

October 2024

Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, Matrix #07-01, Singapore, 138761, Republic of Singapore.

Background: The transition from explanative modeling of fitted data to the predictive modeling of unseen data for systems biology endeavors necessitates the effective recovery of reaction parameters. Yet, the relative efficacy of optimization algorithms in doing so remains under-studied, as to the specific reaction kinetics and the effect of measurement noises. To this end, we simulate the reactions of an artificial pathway using 4 kinetic formulations: generalized mass action (GMA), Michaelis-Menten, linear-logarithmic, and convenience kinetics.

View Article and Find Full Text PDF

Sustainable Polymeric Biomaterials from Alternative Feedstocks.

ACS Biomater Sci Eng

November 2024

Institute of Materials Research and Engineering (IMRE), Agency for Science, Technology and Research (A*STAR), 2 Fusionopolis Way, Innovis #08-03, Singapore 138634, Republic of Singapore.

As materials engineered to interact with biological systems for medical purposes, polymeric biomedical materials have revolutionized and are indispensable in modern healthcare. However, aging populations and improving healthcare standards worldwide have resulted in ever-increasing demands for such biomaterials. Currently, many clinically used polymers are derived from nonrenewable petroleum resources, thus spurring the need for exploring alternatives for the next generation of sustainable biomaterials.

View Article and Find Full Text PDF
Article Synopsis
  • Scientists from 34 labs in 19 countries worked together to measure certain fats (ceramides) in human blood using special techniques.
  • They used both standard methods and their own methods to get very accurate and consistent results.
  • The study helps improve future medical tests and treatments by providing reliable information about these fats in blood samples.
View Article and Find Full Text PDF

Systems biology approach for enhancing limonene yield by re-engineering Escherichia coli.

NPJ Syst Biol Appl

October 2024

Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis St, Matrix, Singapore, 138671, Singapore.

Engineered microorganisms have emerged as viable alternatives for limonene production. However, issues such as low enzyme abundance or activities, and regulatory feedback/forward inhibition may reduce yields. To understand the underlying metabolism, we adopted a systems biology approach for an engineered limonene-producing Escherichia coli strain K-12 MG1655.

View Article and Find Full Text PDF

Draft genome of a sp. isolated from the skeleton of from a Singaporean reef.

Microbiol Resour Announc

November 2024

Singapore Centre for Environmental Life Sciences Engineering (SCELSE), Nanyang Technological University (NTU), Singapore, Singapore.

A sp. was isolated from the skeleton of the heat resilient coral . Genome analysis revealed the presence of the complete denitrification pathway and potential dimethylsulfoniopropionate metabolism which enhance coral resilience and production of tropodithietic acid, an antibiotic implicated in host defense.

View Article and Find Full Text PDF

The impact of short-lived controls on the interpretation of lifespan experiments and progress in geroscience - Through the lens of the "900-day rule".

Ageing Res Rev

November 2024

Healthy Longevity Translational Research Programme, Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Centre for Healthy Longevity, National University Health System, Singapore; Departments of Biochemistry and Physiology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore; Department of Physiology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore. Electronic address:

Article Synopsis
  • Lifespan extension is traditionally used to evaluate aging interventions, but this method has limitations, particularly when control group lifespans are short, leading to overstated effectiveness.
  • Statistical issues and the rarity of independent replications in mouse studies can skew results, making it hard to trust findings from a single study.
  • The authors suggest using a "900-day rule," which indicates that for an intervention to be credible, control lifespans should be around 900 days, and treated groups should significantly surpass this, to help identify promising longevity treatments.
View Article and Find Full Text PDF

Toward the Design of Allosteric Effectors: Gaining Comprehensive Control of Drug Properties and Actions.

J Med Chem

October 2024

Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), 30 Biopolis Street, #07-01, Matrix, Singapore 138671, Singapore.

Article Synopsis
  • The therapeutic potential of allosteric drugs is being recognized, but finding effective allosteric effectors has mostly been accidental rather than strategic.
  • A new computational framework has been developed to systematically identify and design allosteric sites and effectors, enabling precise regulation of specific functional sites.
  • This framework was validated with key proteins like the SARS-CoV-2 protease and K-Ras oncoprotein, showing potential for creating targeted allosteric therapies in the context of precision medicine.
View Article and Find Full Text PDF

N-methyladenosine (mA) RNA methylation is a prevalent RNA modification that significantly impacts RNA metabolism and cancer development. Maintaining the global mA levels in cancer cells relies on RNA accessibility to methyltransferases and the availability of the methyl donor S-adenosylmethionine (SAM). Here, we reveal that death associated protein 3 (DAP3) plays a crucial role in preserving mA levels through two distinct mechanisms.

View Article and Find Full Text PDF
Article Synopsis
  • Researchers aim to better understand the protein-coding genome due to its importance in human health, while questioning what previous genomic studies may have overlooked regarding non-canonical open reading frames (ncORFs).
  • Over the last ten years, ncORFs have shown potential relevance in human cell types and diseases, but their impact on the human proteome was previously unclear, prompting a collaborative effort to analyze their protein-level evidence.
  • The study found that 25% of analyzed ncORFs contribute to translated proteins, resulting in over 3,000 new peptides from extensive mass spectrometry data, and established an annotation framework and public tools to support ongoing research in this area.
View Article and Find Full Text PDF
Article Synopsis
  • Human silencers are crucial for regulating gene expression during development, but their significance in cancer progression and the formation of 'super-silencers' is still unclear.
  • This study highlights how two components of the FGF18 gene can work together to create a super-silencer, and their knockout significantly increases FGF18 expression and affects cell characteristics.
  • The research demonstrates that specific inhibitors can disrupt these super-silencers, leading to reduced levels of certain genes and promoting anticancer effects, suggesting a potential therapeutic avenue for cancer treatment.
View Article and Find Full Text PDF

Recombinant antibodies (rAbs) have emerged as a promising solution to tackle antigen specificity, enhancement of immunogenic potential and versatile functionalization to treat human diseases. The development of single chain variable fragments has helped accelerate treatment in cancers and viral infections, due to their favorable pharmacokinetics and human compatibility. However, designing rAbs is traditionally viewed as a genetic engineering problem, with phage display and cell free systems playing a major role in sequence selection for gene synthesis.

View Article and Find Full Text PDF

Human norovirus (HuNoV) is the leading cause of foodborne illness in the developed world and a major contributor to gastroenteritis globally. Its low infectious dose and environmental persistence necessitate effective disinfection protocols. Sodium hypochlorite (NaOCl) bleach is a widely used disinfectant for controlling HuNoV transmission via contaminated fomites.

View Article and Find Full Text PDF

A photonic bandgap is a range of wavelengths wherein light is forbidden from entering a photonic crystal, similar to the electronic bandgap in semiconductors. Fabricating photonic crystals with a complete photonic bandgap in the visible spectrum presents at least two important challenges: achieving a material refractive index > ~2 and a three-dimensional patterning resolution better than ~280 nm (lattice constant of 400 nm). Here we show an approach to overcome such limitations using additive manufacturing, thus realizing high-quality, high-refractive index photonic crystals with size-tunable bandgaps across the visible spectrum.

View Article and Find Full Text PDF

Context: Ketogenic diets and ketone supplements have gained popularity among endurance runners given their purported effects: potentially delaying the onset of fatigue by enabling the increased utilization of the body's fat reserve or external ketone bodies during prolonged running.

Objective: This systematic review was conducted to evaluate the effects of ketogenic diets (>60% fat and <10% carbohydrates/<50 g carbohydrates per day) or ketone supplements (ketone esters or ketone salts, medium-chain triglycerides or 1,3-butadiol) on the aerobic performance of endurance runners.

Data Sources: A systematic search was conducted in PubMed, Web of Science, Pro Quest, and Science Direct for publications up to October 2023.

View Article and Find Full Text PDF

Prolonging hot carrier cooling, a crucial factor in optoelectronic applications, including hot carrier photovoltaics, presents a significant challenge. High-energy band-nesting excitons within parallel bands offer a promising and underexplored avenue for addressing this issue. Here, we exploit an exceptional D exciton cooling prolongation of 2 to 3 orders of magnitude compared to sub-picosecond in typical transition metal dichalcogenides (TMDs) owing to the complex Coulomb environment and the sequential and mismatch-valley relaxation.

View Article and Find Full Text PDF

Recrudescent infections with the human malaria parasite, Plasmodium falciparum, presented traditionally the major setback of artemisinin-based monotherapies. Although the introduction of artemisinin combination therapies (ACT) largely solved the problem, the ability of artemisinin to induce dormant parasites still poses an obstacle for current as well as future malaria chemotherapeutics. Here, we use a laboratory model for induction of dormant P.

View Article and Find Full Text PDF

Interfacial Reactions in Chemical Recycling and Upcycling of Plastics.

ACS Appl Mater Interfaces

September 2024

Institute of Materials Research and Engineering (IMRE), Agency for Science, Technology and Research (A*STAR), 2 Fusionopolis Way, Innovis #08-03, Singapore 138634, Republic of Singapore.

Depolymerization of plastics is a leading strategy to combat the escalating global plastic waste crisis through chemical recycling, upcycling, and remediation of micro-/nanoplastics. However, critical processes necessary for polymer chain scission, occurring at the polymer-catalyst or polymer-fluid interfaces, remain largely overlooked. Herein, we spotlight the importance of understanding these interfacial chemical processes as a critical necessity for optimizing kinetics and reactivity in plastics recycling and upcycling, controlling reaction outcomes, product distributions, as well as improving the environmental sustainability of these processes.

View Article and Find Full Text PDF

Unlabelled: BackgroundThe Organisation for Economic Co-operation and Development (OECD) Patient-Reported Indicator Surveys (PaRIS) initiative aims to support countries in improving care for people living with chronic conditions by collecting information on how people experience the quality and performance of primary and (generalist) ambulatory care services. This paper presents the development of the conceptual framework that underpins the rationale for and the instrumentation of the PaRIS survey.

Methods: The guidance of an international expert taskforce and the OECD Health Care Quality Indicators framework (2015) provided initial specifications for the framework.

View Article and Find Full Text PDF

Exploring Stimuli-Responsive Natural Processes for the Fabrication of High-Performance Materials.

Biomacromolecules

September 2024

Institute of Materials Research and Engineering (IMRE), Agency for Science, Technology and Research (A*STAR), 2 Fusionopolis Way, #08-03 Innovis, Singapore 138634, Republic of Singapore.

Climate change and environmental pollution have underscored the urgency for more sustainable alternatives in synthetic polymer production. Nature's repertoire of biopolymers with excellent multifaceted properties alongside biodegradability could inspire next-generation innovative green polymer fabrication routes. Stimuli-induced processing, driven by changes in environmental factors, such as pH, ionic strength, and mechanical forces, plays a crucial role in natural polymeric self-assembly process.

View Article and Find Full Text PDF

Unveiling Commonalities: Exploring Shared Characteristics in Clear-Cell Carcinomas of the Gynecologic Tract.

Clin Cancer Res

October 2024

Department of Haematology-Oncology, National University Cancer Institute, Singapore (NCIS), National University Hospital, Singapore, Singapore.

Clear-cell carcinomas (CCC) arising from the gynecologic tract (including from the ovary, endometrium, cervix, vulva, or vagina) represent rare but clinically significant entities with intriguing overlapping characteristics. Epidemiologically, CCCs exhibit a predilection for women of Asian ethnicity and are often associated with a previous or synchronous diagnosis of endometriosis. Pathologically, despite originating from different primary organs, CCCs of the gynecologic tract show similar morphologic and immunophenotypic features on traditional histopathology, such as the expression of napsin A and hepatocyte nuclear factor 1β on IHC, without the expression of Wilms tumor 1.

View Article and Find Full Text PDF

Unlabelled: Nasal surgeries (e.g.: rhinoplasties, septoplasties) and sinus surgeries (e.

View Article and Find Full Text PDF

Macrophages are versatile immune cells with remarkable plasticity, enabling them to adapt to diverse tissue microenvironments and perform various functions. Traditionally categorized into classically activated (M1) and alternatively activated (M2) phenotypes, recent advances have revealed a spectrum of macrophage activation states that extend beyond this dichotomy. The complex interplay of signaling pathways, transcriptional regulators, and epigenetic modifications orchestrates macrophage polarization, allowing them to respond to various stimuli dynamically.

View Article and Find Full Text PDF