121 results match your criteria: "National Institute of Fisheries Science (NIFS)[Affiliation]"

The enzymatic and transcriptional adverse effects of hull in-water cleaning discharge on juvenile rockfish (Sebastes schlegeli).

Aquat Toxicol

December 2024

Ecological Risk Research Department, Korea Institute of Ocean Science and Technology, Geoje, 53201, South Korea; Department of Ocean Science, Korea University of Science and Technology, Daejeon, 34113, South Korea. Electronic address:

The hull in-water cleaning (IWC) process creates chemical contaminants, including antifouling paint particle mixtures that are directly discharged into the coastal environment. Recent attention has also been paid to the international regulation of ship hull cleaning discharges in environmental media. However, few studies have investigated the adverse effects or toxic pathways on resident marine species.

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Following the Hebei Spirit oil spill (HSOS) in December 2007, benthic organisms of the Taean coast on the west coast of Korea were heavily affected. A month after HSOS, the alkyl PAHs in the oyster body elevated to 13,500 ng/g dry wt, although it dropped to 5335 ng/g dry wt in December 2008, and returned to the levels before the accident (547-858 ng/g dry wt) by 2010. In 2008 spring, the damaged oysters exhibited deteriorated growth and reproduction, exhibiting signs of physiological stress.

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  • * The infectious pancreatic necrosis virus (IPNV) was isolated from some fish, but also, bacteria causing typical bacterial kidney disease (BKD) were identified using DNA sequencing and specific culture methods.
  • * Histopathological studies showed severe kidney damage, indicating that the mass mortality was linked to the bacterial infection rather than IPNV, marking the first BKD outbreak associated with this bacteria in farmed chum salmon in South Korea.
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  • * The carbon isotope ratios indicated that both particulate and dissolved organic matter mainly come from phytoplankton and melting sea ice, highlighting the meltwater's role in organic carbon supply.
  • * Our findings showed a strong relationship between organic matter quality and its isotopic signatures, suggesting that variations in phytoplankton types influence carbon cycling and microbial activity in the region.
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This study investigated the toxic effects of Bisphenol A (BPA) on the Pacific abalone (Haliotis discus hannai) using in vitro assays with primary cultured hemocytes. The abalone hemocytes were exposed to BPA concentrations up to 100 μM to assess cytotoxicity. Subsequently, hemocytes were exposed to sublethal BPA concentrations (LC = 2.

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Lipids in fish diets provide energy and play important roles in immunity and metabolism. Atlantic salmon, a species that migrates from freshwater to seawater, requires high energy, especially during smoltification. Juvenile teleosts have low lipid requirements, and a high dietary lipid content is known to have negative effects on their growth and digestion.

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Toxic dinoflagellate Alexandrium can produce saxitoxins (STXs) and cause paralytic shellfish poisoning (PSP), and thus they are monitored for environmental safety management. Microscopic discrimination of dinoflagellates is difficult to distinguish between toxic and non-toxic species due to their similar morphology. Meanwhile, an alternative quantitative PCR (qPCR) assay is sensitive, rapid, and cost-effective for harmful species monitoring.

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Distributions of PCDD/Fs, PCBs, and PCNs in coastal sediments collected from major industrial bays in South Korea.

Mar Pollut Bull

March 2024

Department of Civil, Urban, Earth, and Environmental Engineering, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea; UNIST Environmental Analysis Center (UEAC), Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea. Electronic address:

Polychlorinated dibenzo-p-dioxins/furans (PCDD/Fs), polychlorinated biphenyls (PCBs), and polychlorinated naphthalenes (PCNs) were assessed in coastal sediments from industrial bays in South Korea to evaluate the pollution levels and their environmental impact. The mean sediment concentrations of Σ PCDD/Fs, Σ PCBs, and Σ PCNs were 198 ± 140, 3427 ± 7037, and 85 ± 336 pg/g dw, respectively. Generally, pollutant concentrations in the inner bay were higher than those in the outer bay, indicating the influence of industrial emissions and harbor activities.

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  • - The study investigates how the viral hemorrhagic septicemia virus (VHSV) affects olive flounder, identifying the minimum dose required for infection and its implications for fish health.
  • - Researchers found the highest infection rates in the fish's kidney by day three post-exposure, indicating a clear timeline for monitoring VHSV infection.
  • - Results showed that lower temperatures and specific viral doses influenced infection rates, emphasizing the importance of early management strategies for VHSV in fish farming.
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Chromosome-level genome assembly and annotation of the Antarctica whitefin plunderfish Pogonophryne albipinna.

Sci Data

December 2023

Department of Biotechnology, College of Life Sciences and Biotechnology, Korea University, Seoul, 02841, Korea.

The Antarctic whitefin plunderfish Pogonophryne albipinna belongs to the family Artedidraconidae, a key component of Antarctic benthic ecosystems within the order Perciformes and the suborder Notothenioidei. While genome research on P. albipinna using short-read sequencing is available, high-quality genome assembly and annotation employing long-read sequencing have yet to be performed.

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We investigated the mechanism of signal transduction using inactivating (R476H) and activating (D576G) mutants of luteinizing hormone receptor (LHR) of eel at the conserved regions of intracellular loops II and III, respectively, naturally occurring in mammalian LHR. The expression of D576G and R476H mutants was approximately 58% and 59%, respectively, on the cell surface compared to those of eel LHR-wild type (wt). In eel LHR-wt, cAMP production increased upon agonist stimulation.

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Article Synopsis
  • Hirame novirhabdovirus (HIRRV) is a major viral threat to Japanese flounder, leading to this study focused on creating monoclonal antibodies (mAbs) for detection.
  • Seven mAbs were produced, with three targeting the nucleoprotein and four targeting the matrix protein of HIRRV, showcasing specificity without cross-reactivity to other fish viruses.
  • The mAbs, primarily of the IgG1 class, promise to enhance immunodiagnosis methods for HIRRV infections in fish.
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sp. nov., isolated from the gut of an olive flounder .

Int J Syst Evol Microbiol

December 2022

Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon 16419, Republic of Korea.

A Gram-stain-negative, facultatively anaerobic, flagellated and coccoid, ovoid or rod-shaped bacterial strain, NIFS-20-8, was isolated from the intestine of an olive flounder () from the East Sea, Republic of Korea. The neighbour-joining phylogenetic tree of 16S rRNA gene sequences showed that strain NIFS-20-8 fell within the clade comprising the type strains of species. Strain NIFS-20-8 exhibited 16S rRNA gene sequence similarities of 97.

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The follicle-stimulating hormone receptor (FSHR) contains several N-linked glycosylation sites in its extracellular region. We conducted the present study to determine whether conserved glycosylated sites in eel FSHR are necessary for cyclic adenosine monophosphate (cAMP) signal transduction. We used site-directed mutagenesis to induce four mutations (N120Q, N191Q, N272Q, and N288Q) in the N-linked glycosylation sites of eel FSHR.

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We compared uptake rates and concentrations of gaseous elemental mercury (GEM) by passive sampling conditions and investigated the spatial distribution of GEM in Ulsan, the largest industrial city in South Korea. For the optimization of sampling conditions, two outer sampling containers (cylindrical polyethylene terephthalate and two stainless steel bowls), two different sulfur contents of the sorbent (16.3% and 26.

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Spatial and temporal trends in polychlorinated naphthalenes in sediment from Ulsan and Onsan Bays of Korea: Potential sources and ecotoxicological concerns.

Environ Geochem Health

September 2023

Department of Marine Science and Convergent Technology, College of Science and Convergence Technology, Hanyang University, Ansan, 15588, Republic of Korea.

Article Synopsis
  • The study examines polychlorinated naphthalenes (PCNs) in coastal sediment from industrialized bays in Korea, identifying 18 different PCN congeners.
  • All sediment samples contained detectable levels of PCNs, indicating both ongoing and historical pollution, with the highest concentrations found near industrial areas and rivers.
  • Congeners linked to combustion and PCB usage were prominent, with peak PCN levels rising from the 1980s to the mid-2000s before decreasing by 2015, although cumulative toxicity risks for marine life remain a concern.
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Sustainable methods that increase farmed fish yield while controlling infections are required to prevent economic losses in aquaculture farms. In this study, we evaluated the effects of betaine-supplemented (0%, 0.1%, 0.

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  • Marine microplastics (MPs), particularly polystyrene (PS), are ingested and egested by Pacific oysters (Crasostrea gigas), with a significant portion being retained after 7 days of exposure to 300 n/L of PS.
  • Ingestion peaked within 6 hours, with up to 60.4% of the PS ingested, while the maximum ingestion capacity was calculated at 73.0 n/g wet weight.
  • Smaller PS MPs (<50 μm) were found to have higher ingestion and egestion rates compared to larger sizes, suggesting that smaller particles pose a greater risk to human health via maricultural products, although depuration could mitigate this risk.
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Shifts in benthic bacterial communities associated with farming stages and a microbiological proxy for assessing sulfidic sediment conditions at fish farms.

Mar Pollut Bull

May 2022

Department of Marine Science and Convergence Technology, Hanyang University, 55 Hanyangdaehak-ro, Sangnok-gu, Ansan, Gyeonggi-do 15588, South Korea. Electronic address:

Article Synopsis
  • The study examined how aquaculture affects sediment conditions related to sulfur cycles by analyzing bacterial community changes throughout different farming stages.
  • Sulfate reduction rates and levels of acid volatile sulfides were significantly higher in mid- and post-farming stages compared to the early stage, indicating lasting effects from aquaculture.
  • Different types of bacteria dominated at various stages: early stages featured certain sulfate-reducing bacteria, while mid- and post-stages saw a shift to fermenting bacteria and complete oxidizing sulfate-reducing bacteria, reflecting the changing sediment conditions.
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gen. nov., sp. nov., isolated from stalked sea squirt .

Int J Syst Evol Microbiol

November 2021

Department of Food Science and Biotechnology, Sungkyunkwan University, Jangan-gu, Suwon 16419, Republic of Korea.

A Gram-stain-negative, strictly aerobic, non-motile and rod-shaped bacterial strain, MYP1-1, was isolated from the intestine of a stalked sea squirt () of the South Sea in the Republic of Korea. The neighbour-joining phylogenetic tree based on 16S rRNA gene sequences revealed that strain MYP1-1 clustered with the type strains of species and . Strain MYP1-1 exhibited 16S rRNA gene sequence similarity values of 97.

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A Case of Submandibular Leiomyosarcoma, Mimicking an Abscess, in a Ball Python ().

Vet Sci

October 2021

Laboratory of Aquatic Biomedicine, Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University, Seoul 08826, Korea.

A two-year-old ball python with a submandibular mass was evaluated. Fine needle aspiration resulted in debris containing purulent materials and bacterial cells on cytology. Radiography demonstrated multi-focal radiopaque lesions in the mass, which were suspected to be mineralization; there was an absence of mandibular invasion or lung involvement.

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The signal transduction of the equine lutropin/choriogonadotropin receptor (eLH/CGR) is unclear in naturally occurring activating/inactivating mutants of this receptor, which plays an important role in reproductive physiology. We undertook the present study to determine whether conserved structurally related mutations in eLH/CGR exhibit similar mechanisms of signal transduction. We constructed four constitutively activating mutants (M398T, L457R, D564G, and D578Y) and three inactivating mutants (D405N, R464H, and Y546F); measured cyclic adenosine monophosphate (cAMP) accumulation via homogeneous time-resolved fluorescence assays in Chinese hamster ovary cells; and investigated cell-surface receptor loss using an enzyme-linked immunosorbent assay in human embryonic kidney 293 cells.

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In Jeju Island, multiple land-based aquafarms were fully operational along most coastal region. However, the effect of effluent on distribution and behaviours of dissolved organic matter (DOM) in the coastal water are still unknown. To decipher characteristics of organic pollution, we compared physicochemical parameters with spectral optical properties near the coastal aquafarms in Jeju Island.

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is a major pathogen that causes a high mortality rate in trout farms. However, systemic responses to the pathogen and its interactions with multiple organs during the course of infection have not been well described. In this study, dual-organ transcriptomic responses in the liver and head kidney and hemato-serological indexes were profiled under infection and recovery to investigate systemic immuno-physiological characteristics.

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