957 results match your criteria: "National Institute of Biology.[Affiliation]"

Abscission is a tightly regulated process in which plants shed unnecessary, infected, damaged, or aging organs, as well as ripe fruits, through predetermined abscission zones in response to developmental, hormonal, and environmental signals. Despite its importance, the underlying mechanisms remain incompletely understood. This study highlights the deleterious effects of abscission on chloroplast ultrastructure in the cells of the tomato flower pedicel abscission zone, revealing spatiotemporal differential gene expression and key transcriptional networks involved in chloroplast vesiculation during abscission.

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Objectives: To estimate the lifetime prevalence of first and recurrent systemic allergic reaction to bee venom among Slovenian beekeepers. Additionally, we aimed to elucidate the risk factors predisposing beekeepers to developing systemic allergic reaction to bee venom.

Methods: A nationwide cross-sectional study was conducted among 1,080 beekeepers who are members of the Slovenian beekeeper's association, between 1 November 2021 and 31 May 2023.

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Article Synopsis
  • A team of over 180 researchers from more than 40 countries is addressing the issues related to "phantom agents," which are proposed pathogenic agents that are listed without concrete evidence of their existence.
  • These phantom agents, identified only through symptoms and lacking proper isolates or genetic data, create obstacles for trade and plant certification, making effective detection and risk assessment difficult.
  • The researchers recommend removing these agents from regulatory lists and updating standards in line with modern diagnostic methods to facilitate germplasm exchange and support global agriculture.
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Background: Nucleic acid amplification tests (NAATs) assist in the diagnosis of numerous infectious diseases. They are typically sensitive and specific and can be quickly developed and adapted. Far more challenging is the development of standards to ensure NAATs are performing within specification; reference materials take time to develop and suitable reference measurement procedures (RMPs) have not been available.

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Interaction of an Oomycete Nep1-like Cytolysin with Natural and Plant Cell-Mimicking Membranes.

J Membr Biol

December 2024

Department of Molecular Biology and Nanobiotechnology, National Institute of Chemistry, Hajdrihova 19, 1000, Ljubljana, Slovenia.

Article Synopsis
  • Plants face attacks from pathogens that use effectors like necrosis- and ethylene-inducing peptide-1-like proteins (NLPs) to invade and damage them.
  • NLPs, known for causing cell death and tissue damage, disrupt the plant's plasma membrane through unique mechanisms that create small, temporary membrane ruptures.
  • Recent research utilized confocal fluorescence microscopy to analyze how NLP interacts with model plant cell membranes, revealing that NLP's permeabilization effects depend on its concentration and time of exposure, and confirming its binding and structural changes on these membranes.
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Understanding what drives protein abundance is essential to biology, medicine, and biotechnology. Driven by evolutionary selection, an amino acid sequence is tailored to meet the required abundance of a proteome, underscoring the intricate relationship between sequence and functional demand. Yet, the specific role of amino acid sequences in determining proteome abundance remains elusive.

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  • The global demand for healthier lifestyles and eco-friendly choices is rising, with consumers seeking natural products that promote well-being.
  • The marine environment is explored as a valuable resource for the cosmetics industry, offering bioactive compounds that can be used safely and effectively in various personal care products.
  • The manuscript discusses sourcing methods, safety issues, and includes case studies on innovative cosmetic applications developed from marine organisms in Iceland and Italy.
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In vitro hepatic 3D cell models and their application in genetic toxicology: A systematic review.

Mutat Res Genet Toxicol Environ Mutagen

December 2024

National Institute of Biology, Department of Genetic Toxicology and Cancer Biology, Večna pot 121, Ljubljana 1000, Slovenia. Electronic address:

Article Synopsis
  • The rising use of new chemicals and consumer products has spurred concerns about their potential to cause DNA damage and significant health issues, leading to a demand for genotoxicity testing data.
  • Traditional testing methods involve using laboratory animals, which are expensive and raise ethical issues, prompting the development of more accurate in vitro approaches that minimize animal use.
  • In particular, 3D cell models have emerged as promising alternatives to 2D cultures, providing better physiological relevance and predictive data for in vivo conditions, and their use in genotoxicity testing has been increasing, as highlighted in a review of 31 recent studies.
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  • The common tern, a migratory seabird, is facing a decline in populations across Europe due to threats like habitat destruction and human interference.
  • A study analyzed the genetic structure and diversity of common terns from Northern, Southern Inland, and Southern Marine areas using genetic markers, revealing high diversity overall, but the Southern Marine group had the least.
  • The findings suggested weak population genetic structure with high gene flow, indicating that geographical distance between breeding colonies had little impact on genetic differences; the study recommends further research on migration dynamics and conservation efforts for breeding sites.
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In this study, explainable machine learning techniques are applied to predict the toxicity of mussels in the Gulf of Trieste (Adriatic Sea) caused by harmful algal blooms. By analysing a newly created 28-year dataset containing records of toxic phytoplankton in mussel farming areas and diarrhetic shellfish toxins in mussels (Mytilus galloprovincialis), we train and evaluate the performance of machine learning (ML) models to accurately predict diarrhetic shellfish poisoning (DSP) events. Based on the F1 score, the random forest model provided the best prediction of toxicity results at which the harvesting of mussels is stopped according to EU regulations.

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Algal blooms impact trophic interactions, community structure and element fluxes. Despite playing an important role in the demise of phytoplankton blooms, only few viruses infecting diatoms have been cultured. Pseudo-nitzschia is a widespread diatom genus that commonly blooms in coastal waters and contains toxin-producing species.

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Insects rely on substrate vibrations in numerous intra- and interspecific interactions. Yet, our knowledge of noise impact in this modality lags behind that in audition, limiting our understanding of how anthropogenic noise affects insect communities. Auditory research has linked impaired signal perception in noise (i.

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The feasibility and technical capacity for producing crosslinked sub-micron gels with a nano spray-dryer were studied with variable pH systems incorporating alginate, pectin, and pullulan. The obtained powders were characterized for their morphology, particle size distribution, and their toxicological safety profile using genotoxicity and cytotoxicity assays. Additionally, quercetin was added to the encapsulation system to study the potential of the system to encapsulate this material.

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  • Cylindrospermopsin (CYN) is a toxic cyanotoxin that may enhance the toxicity of other contaminants like arsenic (As) and cadmium (Cd), prompting research into their combined effects on human immune cells.
  • Tests showed that both As and Cd reduced the viability of immune cell lines Jurkat and THP-1, with specific exposure concentrations noted for each contaminant.
  • The study also found that CYN, when combined with As or Cd, affected the expression of cytokines, indicating complex interactions that suggest a necessary reevaluation of risk assessments for environmental contaminants.
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Assessing historical changes in marine biodiversity at regional or local scales is often challenging due to insufficient long-term data for most marine organisms. Yet, these assessments are crucial to understanding potential long-term variation in the species pool in response to complex and interacting local and global environmental changes. Here, we performed a comprehensive review of scientific and grey literature, archival records and floristic data spanning over the last two centuries to reconstruct an updated and revised taxonomic dataset of macroalgae in the Gulf of Trieste (Northern Adriatic Sea), one of the most exposed to human-driven pressures and climatically vulnerable regions in the Mediterranean Sea.

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Making PBPK models more reproducible in practice.

Brief Bioinform

September 2024

Laboratory of Systems and Synthetic Biology (SSB), Wageningen University and Research, Agrotechnology and Food Sciences, Stippeneng 4, 6708 WE Wageningen, The Netherlands.

Systems biology aims to understand living organisms through mathematically modeling their behaviors at different organizational levels, ranging from molecules to populations. Modeling involves several steps, from determining the model purpose to developing the mathematical model, implementing it computationally, simulating the model's behavior, evaluating, and refining the model. Importantly, model simulation results must be reproducible, ensuring that other researchers can obtain the same results after writing the code de novo and/or using different software tools.

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Rapid and accurate identification of bacterial pathogens is crucial for effective treatment and infection control, particularly in hospital settings. Conventional methods like culture techniques and MALDI-TOF mass spectrometry are often time-consuming and less sensitive. This study addresses the need for faster and more precise diagnostic methods by developing novel digital PCR (dPCR) assays for the rapid quantification of biomarkers from three Gram-negative bacteria: Acinetobacter baumannii, Klebsiella pneumoniae, and Pseudomonas aeruginosa.

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The Buccal Fat Pad: A Unique Human Anatomical Structure and Rich and Easily Accessible Source of Mesenchymal Stem Cells for Tissue Repair.

Bioengineering (Basel)

September 2024

Anatomy and Physiopathology Division, Department of Clinical and Experimental Sciences, University of Brescia, 25123 Brescia, Italy.

Buccal fat pads are biconvex adipose tissue bags that are uniquely found on both sides of the human face along the anterior border of the masseter muscles. Buccal fat pads are important determinants of facial appearance, facilitating gliding movements of facial masticatory and mimetic muscles. Buccal fad pad flaps are used for the repair of oral defects and as a rich and easily accessible source of mesenchymal stem cells.

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Cryptobenthic fish are small benthic fish species that normally live in various hiding places. Due to their large numbers, they are very important for energy transfer to higher trophic levels. However, due to their small size and hidden lifestyle, knowledge about them and their ecology, including their diet, is still limited.

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  • Researchers found that the subseafloor crust harbors not only microbes and viruses, but also animals like the giant tubeworm Riftia pachyptila, suggesting a link between seafloor and subseafloor ecosystems.
  • The study proposes that tubeworm larvae may travel through the hydrothermal vent fluid rather than dispersing in the open water.
  • The discovery of these animals in the subseafloor has significant implications for understanding geochemical processes and highlights the necessity of protecting these habitats, which are not yet fully understood.
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  • Modular protein engineering allows for the creation of high-molecular-weight assemblies and nanoscale biomaterials with precision, inspired by the structure of human dystrophin.
  • The study focuses on designing elongated nanorods using a module of three tandem spectrin repeats that self-assemble through coiled-coil peptides, ensuring structural integrity and continuity of the α-helix.
  • The resulting rigid rods, measured by advanced microscopy techniques, can be equipped with various proteins or peptides along their length, showcasing their potential as functionalized biomaterials in research and applications.
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After plants transitioned from water to land around 450 million years ago, they faced novel pathogenic microbes. Their colonization of diverse habitats was driven by anatomical innovations like roots, stomata, and vascular tissue, which became central to plant-microbe interactions. However, the impact of these innovations on plant immunity and pathogen infection strategies remains poorly understood.

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The systemic toxicity of cyclic peptides produced by cyanobacteria (CCPs) is not yet completely understood. Apart from the most known damages to the liver and kidneys, symptoms of their neurotoxicity have also been reported. Hepatotoxic CCPs, like microcystins, as well as non-hepatotoxic anabaenopeptins and planktopeptins, all exhibit cytotoxic and cytostatic effects on mammalian cells.

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