2,325 results match your criteria: "National Institute for Communicable Diseases.[Affiliation]"

Candida albicans is a common fungal pathogen and amongst the leading causes of invasive candidiasis globally. This systematic review examines the characteristics and global impact of invasive infections caused by C. albicans.

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Histoplasmosis, a significant mycosis primarily prevalent in Africa, North and South America, with emerging reports globally, poses notable health challenges, particularly in immunocompromised individuals such as people living with HIV/AIDS and organ transplant recipients. This systematic review, aimed at informing the World Health Organization's Fungal Priority Pathogens List, critically examines literature from 2011 to 2021 using PubMed and Web of Science, focusing on the incidence, mortality, morbidity, antifungal resistance, preventability, and distribution of Histoplasma. We also found a high prevalence (22%-44%) in people living with HIV, with mortality rates ranging from 21% to 53%.

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COVID-19 Vaccine Uptake and Effectiveness by Time since Vaccination in the Western Cape Province, South Africa: An Observational Cohort Study during 2020-2022.

Vaccines (Basel)

June 2024

Centre for Infectious Disease Epidemiology and Research, School of Public Health, Faculty of Health Sciences, University of Cape Town, Cape Town 7925, South Africa.

There are few data on the real-world effectiveness of COVID-19 vaccines and boosting in Africa, which experienced widespread SARS-CoV-2 infection before vaccine availability. We assessed the association between vaccination and severe COVID-19 in the Western Cape, South Africa, in an observational cohort study of >2 million adults during 2020-2022. We described SARS-CoV-2 testing, COVID-19 outcomes, and vaccine uptake over time.

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Hepatitis A (HAV) presents a significant global health concern with diverse clinical manifestations primarily transmitted through fecal-oral routes, emphasizing the critical role of sanitation and water cleanliness in transmission dynamics. Age-related variations, notably asymptomatic presentation in children, add complexity. The World Health Organization's (WHO) endemicity classification aids in understanding prevalence and control strategies.

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Whole-Genome Sequencing of Human and Porcine Isolates on a Commercial Pig Farm in South Africa.

Antibiotics (Basel)

June 2024

Centre for Healthcare-Associated Infections, Antimicrobial Resistance and Mycoses, National Institute for Communicable Diseases (NICD), a Division of the National Health Laboratory Service (NHLS), Johannesburg 2192, South Africa.

Article Synopsis
  • The study focused on antibiotic resistance in micro-organisms from pigs and humans on a commercial farm in South Africa, comparing results from traditional methods and whole-genome sequencing (WGS).
  • It found that pig isolates showed higher levels of antibiotic resistance and more diverse resistance genes compared to those from humans, with various bacterial pathovars identified at low frequencies.
  • While a common sequence type complex (STc 10) was prevalent in both groups, the research revealed genetic diversity and differences in virulence and resistance profiles linked to their sources.
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Background: Southern African countries have the largest global burden of HIV and syphilis, with a high prevalence among women of reproductive age. Although antenatal screening is standard of care, syphilis screening has generally lagged behind HIV screening. We aimed to evaluate the performance and operational characteristics of two commercial dual HIV/syphilis point-of-care tests (POCTs) for simultaneous maternal HIV/syphilis screening.

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SARS-CoV-2 humoral immunity in people living with HIV-1.

Trends Immunol

July 2024

South African Medical Research Council Antibody Immunity Research Unit, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa; HIV Virology Section, Centre for HIV and STIs, National Institute for Communicable Diseases of the National Health Laboratory Services, Johannesburg, South Africa; Centre for the AIDS Program of Research in South Africa (CAPRISA), University of KwaZulu Natal, Durban, South Africa. Electronic address:

The effect of COVID-19 on the high number of immunocompromised people living with HIV-1 (PLWH), particularly in Africa, remains a critical concern. Here, we identify key areas that still require further investigation, by examining COVID-19 vaccine effectiveness, and understanding antibody responses in SARS-CoV-2 infection and vaccination in comparison with people without HIV-1 (PWOH). We also assess the potential impact of pre-existing immunity against endemic human coronaviruses on SARS-CoV-2 responses in these individuals.

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Invasive candidiasis is a rising global health threat with increasing incidence, persistently high mortality, and diminishing treatment options. Antifungal resistance has rapidly emerged and spread, with multidrug-resistant species deemed an urgent and serious threat. While acknowledging the key role of antifungal stewardship and infection control in curbing spread, we examine the role of antifungal monotherapy in driving resistance and the potential for combination therapy to prevent stress adaptation and emergence of drug resistance.

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Article Synopsis
  • In 2016, the WHO reported approximately 374 million new infections from four curable STIs: chlamydia, gonorrhoea, syphilis, and trichomoniasis, highlighting the need for effective screening methods.
  • Recent advancements in point-of-care tests (POCTs) for these STIs show promising results in lab studies, but there is a lack of clinical performance data, particularly among high-risk groups like men who have sex with men (MSM) and women.
  • This research aims to evaluate the effectiveness and user acceptability of molecular-based diagnostic tests (Xpert CT/NG and Xpert TV) for detecting these infections in MSM and women across seven countries, comparing results to established reference tests.
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Background: Infant botulism is caused by botulinum neurotoxin (BoNT), which is mainly produced by . However, there is a lack of longitudinal cohort studies on infant botulism. Herein, we have constructed a cross-sectional and longitudinal cohort of infants infected with .

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Purpose: Prostate cancer disproportionately affects men of African descent, yet their representation in tissue-based studies is limited. This multinational, multicenter pilot study aims to establish the groundwork for collaborative research on prostate cancer in sub-Saharan Africa.

Methods: The Men of African Descent and Carcinoma of the Prostate network formed a pathologist working group representing eight institutions in five African countries.

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MmpR5 protein truncation and bedaquiline resistance in Mycobacterium tuberculosis isolates from South Africa: a genomic analysis.

Lancet Microbe

August 2024

Centre for Tuberculosis, National and Supranational TB Reference Laboratory, National Institute for Communicable Diseases, a division of the National Health Laboratory Service, Johannesburg, South Africa.

Background: The antibiotic bedaquiline is a key component of new WHO regimens for drug-resistant tuberculosis; however, predicting bedaquiline resistance from bacterial genotypes remains challenging. We aimed to understand the genetic mechanisms of bedaquiline resistance by analysing Mycobacterium tuberculosis isolates from South Africa.

Methods: For this genomic analysis, we conducted whole-genome sequencing of Mycobacterium tuberculosis samples collected at two referral laboratories in Cape Town and Johannesburg, covering regions of South Africa with a high prevalence of tuberculosis.

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Comparison of the effect of bacterial stimulation on the global epigenetic landscape and transcription of immune genes in primarily zoophilic members of the Anopheles gambiae complex (Diptera: Culicidae).

Mol Biochem Parasitol

December 2024

Centre for Emerging Zoonotic and Parasitic Diseases, National Institute for Communicable Diseases of the National Health Laboratory Service, Johannesburg, South Africa; Wits Research Institute for Malaria, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, South Africa. Electronic address:

Members of the Anopheles gambiae complex vary in their vector competence, and this is often attributed to behavioural differences. Similarly, there are differences in transmission capabilities of the zoophilic members of this complex despite exhibiting similar behaviours. Therefore, behavioural differences alone cannot fully explain vector competence variation within members of the An.

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Lived experience of people with cryptococcal meningitis: A qualitative study.

South Afr J HIV Med

May 2024

Department of Human Nutrition, Faculty of Health Sciences, University of Pretoria, Pretoria, South Africa.

Background: The high burden of cryptococcal meningitis (CM) among people living with HIV persists despite widespread access to antiretroviral therapy. Efforts to prevent CM among people living with HIV could be hindered by a limited understanding of their lived experiences of CM and its diagnosis.

Objectives: To explore and describe the experiences of people diagnosed with HIV-associated CM in routine care.

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How paediatric HIV services weathered the COVID-19 storm in Tshwane District, South Africa.

South Afr J HIV Med

May 2024

Department of Paediatrics and Child Health, Faculty of Health Sciences, University of Pretoria, Pretoria, South Africa.

Background: The coronavirus disease 2019 (COVID-19) pandemic disrupted paediatric HIV services across South Africa. Shortly before COVID-19, updated national HIV guidelines were released.

Objectives: This study describes COVID-19's impact on paediatric HIV services in Tshwane District, South Africa.

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Background: Treatment of carbapenem-resistant Enterobacterales (CRE) infections in low-resource settings is challenging particularly due to limited treatment options. Colistin is the mainstay drug for treatment; however, nephrotoxicity and neurotoxicity make this drug less desirable. Thus, mortality may be higher among patients treated with alternative antimicrobials that are potentially less efficacious than colistin.

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Background: Anopheles arabiensis, a highly adaptable member of the Anopheles gambiae complex, poses a challenge for control efforts due to its outdoor biting and resting behaviour. Consequently, indoor insecticide-based control methods are ineffective against An. arabiensis.

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Article Synopsis
  • This study aimed to evaluate targeted next-generation sequencing (NGS) as a method for diagnosing drug-resistant tuberculosis by reviewing existing data on its effectiveness and prevalence in detecting mutations across different gene targets.
  • The researchers conducted a systematic review and meta-analysis of various sources for publications related to targeted NGS from 2005 to 2022, focusing on studies that utilized the technique for drug resistance prediction in tuberculosis.
  • They assessed the diagnostic accuracy of targeted NGS by analyzing sensitivity and specificity compared to traditional drug susceptibility testing methods, using a Bayesian model for comprehensive results.
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  • The study investigates how climatic factors influence mosquito populations in Mamfene, South Africa, from 2014 to 2019, using various analytical methods to determine correlations between climate and population density.
  • The analysis revealed positive correlations between mosquito population density and temperature, humidity, and rainfall, while wind negatively impacted density; important predictors for forecasting mosquito abundance were identified.
  • The findings highlight that climate variables affect mosquito distribution and suggest integrating strategies like the Sterile Insect Technique to manage populations and reduce malaria risk effectively.
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There is a growing body of evidence that invertebrates can generate improved secondary responses after a primary challenge. This immunological memory can be primed by a range of pathogens, including bacteria. The generation of immunological memory has been demonstrated in mosquitoes, with the memory primed by a range of initial stimuli.

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  • This systematic review evaluated the causes of vaginal discharge, urethral discharge, and genital ulcers in sub-Saharan Africa, highlighting the reliance on syndromic management due to lack of aetiologic diagnostics.
  • It analyzed data from 206 reports across 32 countries, finding that candidiasis, bacterial vaginosis, and chlamydia were the leading causes of vaginal discharge, while gonorrhea dominated urethral infections.
  • The study revealed consistent patterns in aetiological factors across regions, though HIV status and age influenced diagnosis, and noted a significant trend over time in causes, especially for genital ulcers.
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  • Anopheles funestus, a key malaria vector in East and Southern Africa, is less understood in terms of ecology and resistance to insecticides compared to other mosquitoes, leading to a large-scale study in Tanzania on its genetic resistance and susceptibility to insecticides.
  • The study used bioassays across nine regions to examine resistance, identifying universal resistance to pyrethroids that could be reversed with piperonyl-butoxide, and variable resistance to carbamates and DDT.
  • Geographic patterns showed distinct distribution of genetic markers associated with resistance, with the most complex resistance landscape found in the Tanganyika district of western Tanzania, highlighting the need for tailored vector control strategies.
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Article Synopsis
  • * A survey of 113 participants revealed varying perceptions on the clarity, accuracy, and public availability of evidence needed for malaria diagnostics, highlighting challenges particularly in the approvals and manufacturing stage.
  • * The study emphasizes the importance of better collaboration among stakeholders, improved data sharing, and increased funding, proposing solutions like public data repositories and open-access publishing to enhance evidence generation and utilization in malaria diagnostics.
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Background: Numerous studies in South Africa have reported low HIV viral load (VL) suppression and high attrition rates within the pediatric HIV treatment program.

Objective: Using routine laboratory data, we evaluated HIV VL monitoring, including mobility and overdue VL (OVL) testing, within 5 priority districts in South Africa.

Methods: We performed a retrospective descriptive analysis of National Health Laboratory Service (NHLS) data for children and adolescents aged 1-15 years having undergone HIV VL testing between May 1, 2019, and April 30, 2020, from 152 facilities within the City of Johannesburg, City of Tshwane, eThekwini, uMgungundlovu, and Zululand.

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Background: Future vaccine candidates aim to elicit antibodies against the conserved hemagglutinin stalk domain. Understanding the protective mechanism of these antibodies, which mediate broad neutralization and Fc-mediated functions, following seasonal vaccination is critical.

Methods: Plasma samples were obtained from pregnant women with or without HIV-1 enrolled in a randomised trial (138 trivalent inactivated vaccine [TIV] and 145 placebo recipients).

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