4,078 results match your criteria: "NARA Institute of Science and Technology[Affiliation]"

Article Synopsis
  • The Segment Anything Model (SAM) has been adapted for medical imaging, but accurately segmenting cell nuclei is still challenging due to variability and dense clustering.
  • The study introduces CellSAM, a new cell segmentation algorithm that combines advanced techniques like dual-image encoders, knowledge distillation, and mask fusion, allowing it to accurately capture intricate cell structures even in low-data scenarios.
  • CellSAM shows superior performance in various evaluations, achieving high scores in accuracy, recall, and precision, making it a promising tool for enhancing disease diagnosis and treatment planning in clinical settings.
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Decoding and modifying dynamic attentional bias in gaming disorder.

Philos Trans R Soc Lond B Biol Sci

December 2024

Department of Decoded Neurofeedback, Computational Neuroscience Laboratories, Advanced Telecommunications Research Institute International, Kyoto, Japan.

With the spread of smartphones and computer games, concerns have escalated regarding the rising prevalence of gaming disorder. Patients often display attentional biases, unconsciously turning their attention towards gaming-related stimuli. However, attempts to discover and ameliorate these attentional deficits have yielded inconsistent outcomes, potentially due to the dynamic nature of attentional bias.

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Background: Cognitive behavioral therapy (CBT) is a valuable treatment for mood disorders and anxiety. CBT methods, such as cognitive restructuring, are employed to change automatic negative thoughts to more realistic ones.

Objective: This study extends on previous research conducted by the authors, focused on the process of correcting automatic negative thoughts to realistic ones and reducing distress and anxiety via CBT with a virtual agent.

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The Nedd4L ubiquitin ligase is activated by FCHO2-generated membrane curvature.

EMBO J

December 2024

Department of Molecular Pharmacology, Faculty of Life Sciences, Kumamoto University, 1-1-1 Honjyo, Kumamoto, 860-8556, Japan.

The C2-WW-HECT domain ubiquitin ligase Nedd4L regulates membrane sorting during endocytosis through the ubiquitination of cargo molecules such as the epithelial sodium channel (ENaC). Nedd4L is catalytically autoinhibited by an intramolecular interaction between its C2 and HECT domains, but the protein's activation mechanism is poorly understood. Here, we show that Nedd4L activation is linked to membrane shape by FCHO2, a Bin-Amphiphysin-Rsv (BAR) domain protein that regulates endocytosis.

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Brassinosteroid signaling represses ZINC FINGER PROTEIN11 to regulate ovule development in Arabidopsis.

Plant Cell

October 2024

State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing 210023, China.

Brassinosteroid (BR) signaling and the C-class MADS-box gene AGAMOUS (AG) play important roles in ovule development in Arabidopsis (Arabidopsis thaliana). However, how BR signaling integrates with AG functions to control the female reproductive process remains elusive. Here, we showed that the regulatory role of BR signaling in proper ovule development is mediated by the transcriptional repressor gene ZINC FINGER PROTEIN 11 (ZFP11), which is a direct target of AG.

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The chemical reaction yield is an important factor to determine the reaction conditions. Recently, many data-driven models for yield prediction using high-throughput experimentation datasets have been reported. In this study, we propose a neural network architecture based on the chemical graphs of the reaction components to predict the reaction yield.

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A novel rosarin di-Cu complex 2Cu-1 and a linear six-pyrrolic mono-copper complex 1Cu-1 were synthesized using rosarin as the ligand. The molecular conformations of these complexes were confirmed by X-ray crystallography. The optical study of 1Cu-1 indicated NIR-II absorption due to the long six-pyrrolic ligand and the ICT effect.

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Time and dose selective glucose metabolism for glucose homeostasis and energy conversion in the liver.

NPJ Syst Biol Appl

September 2024

Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan.

Hepatic glucose metabolism serves dual purposes: maintaining glucose homeostasis and converting glucose into energy sources; however, the underlying mechanisms are unclear. We quantitatively measured liver metabolites, gene expression, and phosphorylated insulin signaling molecules in mice orally administered varying doses of glucose, and constructed a transomic network. Rapid phosphorylation of insulin signaling molecules in response to glucose intake was observed, in contrast to the more gradual changes in gene expression.

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HuR (ELAVL1) regulates the CCHFV minigenome and HAZV replication by associating with viral genomic RNA.

PLoS Negl Trop Dis

September 2024

Immune Dynamics in Viral Infections, National Research Center for the Control and Prevention of Infectious Diseases, Nagasaki University, Nagasaki, Japan.

Article Synopsis
  • CCHFV is a dangerous tick-borne virus requiring advanced safety measures, while HAZV, a related virus, is harmless to humans but serves as a model for studying viral replication.
  • Researchers used CRISPR/Cas9 to create mutant cells and found that the RNA-binding protein HuR enhances HAZV replication by stabilizing its RNA and supporting the immune response.
  • HuR also plays a significant role in CCHFV replication by binding to specific RNA regions, suggesting it may be a potential target for therapeutic intervention.
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-Monosubstituted ethylenediamine derivatives with three methylene-tethered aromatic groups ((ArCH)NCHCHN(R)CHAr (R-ArArAr), where Ar = 2-pyridyl, 2-quinolyl, 1- and 3-isoquinolyl and 2-quinoxalyl; R = methyl, benzyl and phenyl) were utilized as pentadentate ligands for copper(II) complexation. Fifteen mononuclear copper(II) complexes were synthesized and exhibit differences in cyclic voltammetry, absorption spectroscopy and solid state geometries, depending on the aromatic group (Ar) and the substituent on the aliphatic nitrogen atom (R) of the ligand. Compared with the pyridine and isoquinoline complexes, the quinoline and quinoxaline derivatives exhibit distinct Cu(II)/Cu(I) redox potentials and d-d transition absorption wavelengths.

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Article Synopsis
  • Autism spectrum disorder (ASD) is a complex lifelong condition, and this study aimed to create a classifier using resting-state fMRI from a large group of 730 Japanese adults to identify its neural and biological features.
  • The developed classifier showed effectiveness in differentiating individuals with ASD from neurotypical controls across various countries, including the US and Belgium, and it also applied to children and adolescents.
  • Importantly, the study found that the classifier identified crucial functional connections related to social interaction difficulties and neurotransmitter activity, and it linked ASD with similar neurobiological factors seen in ADHD and schizophrenia, enhancing understanding of related mental health disorders.
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The undoped and Eu-doped LiCl transparent ceramics were synthesized, and their photoluminescence (PL) and optical stimulated luminescence (OSL) properties were evaluated. The PL properties of the undoped sample revealed as emission band due to a defect center. Additionally, the Eu-doped samples exhibited an emission band due to the 5d-4f transitions of Eu ions.

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Cascade Fluorescence Modulation in Photochromic Microcapsules.

ACS Appl Mater Interfaces

October 2024

Graduate School of Science and Technology, Nara Institute of Science and Technology, NAIST, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan.

Certain derivatives of terarylene are able to undergo a highly efficient oxidative cycloreversion cascade effect, a ring opening reaction with quantum yields above unity, resulting in a colored-to-colorless transition in solution. In the presence of chloroform, high-energy UV and X-rays can trigger this phenomenon, potentially acting as a visual detection system for ionizing radiation. However, chloroform is sensitive to different irradiation wavelengths without distinction, making it difficult to adapt to a reusable device.

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Background: Natural language processing (NLP) techniques can be used to analyze large amounts of electronic health record texts, which encompasses various types of patient information such as quality of life, effectiveness of treatments, and adverse drug event (ADE) signals. As different aspects of a patient's status are stored in different types of documents, we propose an NLP system capable of processing 6 types of documents: physician progress notes, discharge summaries, radiology reports, radioisotope reports, nursing records, and pharmacist progress notes.

Objective: This study aimed to investigate the system's performance in detecting ADEs by evaluating the results from multitype texts.

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Ligand-based virtual screening (LBVS) and structure-based virtual screening (SBVS), and their combinations, are frequently conducted in modern drug discovery campaigns. As a form of combination, an amalgamation of methods from ligand- and structure-based information, termed hybrid VS approaches, has been extensively investigated such as using interaction fingerprints (IFPs) in combination with machine learning (ML) models. This approach has the potential to prioritize active compounds in terms of protein-ligand binding and ligand structural characteristics, which is assumed to be difficult using either one of the approaches.

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Two novel diarylethene-fused subporphyrinoids were prepared and characterized. A mono diarylethene derivative was obtained via a statistical condensation reaction with 2 eq. of 1,2-dicyanobenzene and 1 eq.

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Advances in fluorescence imaging technology have been crucial to the progress of neuroscience. Whether it was specific expression of indicator proteins, detection of neurotransmitters, or miniaturization of fluorescence microscopes, fluorescence imaging has improved upon electrophysiology, the gold standard for monitoring brain activity, and enabled novel methods to sense activity in the brain. Hence, we developed a lightweight and compact implantable CMOS-based lensless Ca2+ imaging device for freely moving transgenic G-CaMP mouse experiments.

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Article Synopsis
  • The study analyzed how gravity affects lung function by comparing lung images from CT scans of 100 healthy participants in supine (lying down) and standing positions.
  • Findings showed that in the supine position, lung attenuation gradients were significantly higher in the upper and lower lobes compared to when standing, whereas standing had greater craniocaudal gradients.
  • No significant correlations were found between lung gradients and participant characteristics like age, sex, or pulmonary function test results.
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Article Synopsis
  • Misfolding of antibody light chains can cause systemic light chain amyloidosis through aggregation and the formation of problematic structures like the 3D domain swap (3D-DS), which has not been experimentally observed.
  • This study utilizes computational methods, including molecular dynamics simulations, to analyze the stability and structural dynamics of the 3D-DS and its failure to maintain its form due to interactions with water molecules.
  • The research concludes that the absence of 3D-DS dimers in experiments is likely due to their tendency to collapse rather than form stable tetramers, offering insights for potential developments in antibody design.
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Real-world data (RWD) in the medical field, such as electronic health records (EHRs) and medication orders, are receiving increasing attention from researchers and practitioners. While structured data have played a vital role thus far, unstructured data represented by text (e.g.

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Emerging evidence suggests that the localization of viral movement proteins (MPs) to both plasmodesmata (PD) and viral replication complexes (VRCs) is the key to viral cell-to-cell movement. However, the molecular mechanism that establishes the subcellular localization of MPs is not fully understood. Here, we investigated the PD localization pathway of red clover necrotic mosaic virus (RCNMV) MP and the functional regions of MP that are crucial for MP localization to PD and VRCs.

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Different roles of the phytohormone gibberellin in the wide-spread arbuscular mycorrhiza and in orchid mycorrhiza.

Curr Opin Plant Biol

December 2024

Faculty of Agriculture, Tottori University, Koyama Minami, Tottori 680-8553, Japan. Electronic address:

Article Synopsis
  • Gibberellin (GA) is a plant hormone that plays a key role in growth and responses to environmental changes, but it also negatively affects arbuscular mycorrhizal (AM) symbiosis, a prevalent form of plant-microbe interaction.
  • Most research on mycorrhizal relationships has been conducted in model plants like legumes and rice, leaving non-model plants' mechanisms poorly understood.
  • Recent studies highlight GA's dual role: it promotes AM symbiosis in Eustoma grandiflorum while inhibiting seed germination and mycorrhizal interactions in orchids.
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Article Synopsis
  • The study focused on analyzing narratives from breast cancer patients to identify various concerns using a natural language processing model called BERT.
  • Researchers labeled interview transcripts with five categories of concerns: "treatment," "physical," "psychological," "work/financial," and "family/friends."
  • The classifiers created from these labeled texts demonstrated varying precision levels, with high scores for "physical" and "work/financial," and lower scores for "treatment," indicating room for improvement through domain adaptation techniques.
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Article Synopsis
  • VemP is a secretory protein in Vibrio that regulates protein-transport activity by halting its own translation until the downstream secD2-secF2 genes, necessary for protein translocation, can be expressed.
  • When protein-transport functions are operating efficiently, VemP's translation arrest is quickly canceled through its interaction with the SecY/E/G translocon, requiring specific trans factors and a critical cis element, Arg-85.
  • The study identifies how VemP accurately monitors the function of SecD/F, revealing key elements that affect the stability and regulation of VemP's translation arrest via interactions at the SecY pore.
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The precise onset of flowering is crucial to ensure successful plant reproduction. The gene () encodes florigen, a mobile signal produced in leaves that initiates flowering at the shoot apical meristem. In response to seasonal changes, is induced in phloem companion cells located in distal leaf regions.

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