76 results match your criteria: "N. N. Vorozhtsov Institute of Organic Chemistry[Affiliation]"
Plants (Basel)
December 2024
N.N. Vorozhtsov Institute of Organic Chemistry SB RAS, Lavrentiev ave. 9, 630090 Novosibirsk, Russia.
The use of biological plant protection products is promising for agriculture. In particular, chitosan-based biopesticides have become widespread for stimulating growth and protecting plants from a wide range of pathogens. Novochizol is a product obtained by intramolecular cross-linking of linear chitosan molecules and has a globular shape, which provides it with a number of advantages over chitosan.
View Article and Find Full Text PDFBiomolecules
July 2024
Institute of Chemical Biology and Fundamental Medicine SB RAS, 630090 Novosibirsk, Russia.
Pulsed electron-electron double resonance (PELDOR) spectroscopy is a powerful method for determining nucleic acid (NA) structure and conformational dynamics. PELDOR with molecular dynamics (MD) simulations opens up unique possibilities for defining the conformational ensembles of flexible, three-dimensional, self-assembled complexes of NA. Understanding the diversity and structure of these complexes is vital for uncovering matrix and regulative biological processes in the human body and artificially influencing them for therapeutic purposes.
View Article and Find Full Text PDFRSC Med Chem
July 2024
Department of Fine Organic Synthesis and Chemistry of Dyes, D.I. Mendeleev University of Chemical Technology of Russia Miusskaya sq., 9 125047 Moscow Russia
Arch Biochem Biophys
August 2024
V. V. Voevodsky Institute of Chemical Kinetics and Combustion, 3 Institutskaya St., 630090, Novosibirsk, Russia; Institute of Solid State Chemistry and Mechanochemistry, 18 Kutateladze St., 630128, Novosibirsk, Russia.
Glycyrrhizinic acid (GA) is one of the active substances in licorice root. It exhibits antiviral activity against various enveloped viruses, for example, SARS-CoV-2. GA derivatives are promising biologically active compounds from perspective of developing broad-spectrum antiviral agents.
View Article and Find Full Text PDFPhys Chem Chem Phys
May 2024
Independent researcher, Germany.
Isocyanates play an essential role in modern manufacturing processes, especially in polyurethane production. There are numerous synthesis strategies for isocyanates both under industrial and laboratory conditions, which do not prevent searching for alternative highly efficient synthetic protocols. Here, we report a detailed theoretical investigation of the mechanism of sulfur dioxide-catalyzed rearrangement of phenylnitrile oxide into phenyl isocyanate, which was first reported in 1977.
View Article and Find Full Text PDFJ Chromatogr A
May 2024
Boreskov Institute of Catalysis, pr. Lavrentieva 5, Novosibirsk 630090, Russia.
This article describes the effect of modification with organic bases such as uracil (U) and polyethyleneimine (PEI) on the adsorption and chromatographic properties of poly(1-trimethylsilyl-1-propyne) (PTMSP) used as a stationary phase (SP) in packed and capillary columns. It was shown that the sorbents prepared on the basis of diatomite Chromosorb P NAW support and successively modified with 9 wt.% PTMSP and 1 wt.
View Article and Find Full Text PDFInt J Mol Sci
April 2024
Institute of Chemical Biology and Fundamental Medicine SB RAS, 630090 Novosibirsk, Russia.
In cancer diagnostics, magnetic resonance imaging (MRI) uses contrast agents to enhance the distinction between the target tissue and background. Several promising approaches have been developed to increase MRI sensitivity, one of which is Overhauser dynamic nuclear polarization (ODNP)-enhanced MRI (OMRI). In this study, a macromolecular construct based on human serum albumin and nitroxyl radicals (HSA-NIT) was developed using a new synthesis method that significantly increased the modification to 21 nitroxide residues per protein.
View Article and Find Full Text PDFMolecules
November 2023
N. D. Zelinsky Institute of Organic Chemistry, Leninsky Ave. 47, Moscow 119991, Russia.
A simple and highly effective methodology for the cross-coupling of heteroaryl iodides with NN-AuPPh at room temperature is reported. The protocol is based on a novel catalytic system consisting of Pd(dba)·CHCl and the phosphine ligand CgPPh having an adamantane-like framework. The present protocol was found to be well compatible with various heteroaryl iodides, thus opening new horizons in directed synthesis of functionalized nitronyl nitroxides and high-spin molecules.
View Article and Find Full Text PDFPhys Chem Chem Phys
August 2023
International Tomography Center SB RAS, 630090 Novosibirsk, Russia.
The binding of G-quadruplex structures (G4s) with photosensitizers is of considerable importance in medicinal chemistry and drug discovery due to their promising potential in photodynamic therapy applications. G4s can experience structural changes as a result of ligand interactions and light exposure. Understanding these modifications is essential to uncover the fundamental biological roles of the complexes and optimize their therapeutic potential.
View Article and Find Full Text PDFJ Phys Chem Lett
August 2023
Goethe University Frankfurt am Main, Institute of Physical and Theoretical Chemistry and Center for Biomolecular Magnetic Resonance, Max von Laue Str. 7, Frankfurt am Main 60438, Germany.
Dynamic nuclear polarization (DNP) is routinely used as a method for increasing the sensitivity to nuclear magnetic resonance (NMR). Recently, high-field solid-effect DNP in viscous liquids on H nuclei was demonstrated using narrow-line polarizing agents. Here we expand the applicability of DNP in viscous media to C nuclei.
View Article and Find Full Text PDFInt J Mol Sci
July 2023
N.N. Vorozhtsov Institute of Organic Chemistry SB RAS, Academician Lavrentiev Ave. 9, 630090 Novosibirsk, Russia.
Site-directed spin labeling followed by investigation using Electron Paramagnetic Resonance spectroscopy is a rapidly expanding powerful biophysical technique to study structure, local dynamics and functions of biomolecules using pulsed EPR techniques and nitroxides are the most widely used spin labels. Modern trends of this method include measurements directly inside a living cell, as well as measurements without deep freezing (below 70 K), which provide information that is more consistent with the behavior of the molecules under study in natural conditions. Such studies require nitroxides, which are resistant to the action of biogenic reductants and have high spin relaxation (dephasing) times, T.
View Article and Find Full Text PDFInt J Mol Sci
June 2023
N.N. Vorozhtsov Institute of Organic Chemistry, Siberian Branch of Russian Academy of Sciences, 630090 Novosibirsk, Russia.
Introduction of Cl and O atoms into C-vinyl carbocations was studied by X-ray diffraction analysis and IR spectroscopy. Chlorine atoms are weak electron acceptors in ordinary molecules but, within vinyl carbocations, manifest themselves as strong electron donors that accept a positive charge. The attachment of a Cl atom directly to a C=C bond leads to an increase in the e-density on it, exceeding that of the common double bond.
View Article and Find Full Text PDFJ Am Chem Soc
May 2023
Institute of Physical and Theoretical Chemistry and Center for Biomolecular Magnetic Resonance, Goethe University Frankfurt am Main, Max von Laue Straße 7, 60438 Frankfurt am Main, Germany.
Dynamic nuclear polarization (DNP) is a hyperpolarization method that is widely used for increasing the sensitivity of nuclear magnetic resonance (NMR) experiments. DNP is efficient in solid-state and liquid-state NMR, but its implementation in the intermediate state, namely, viscous media, is still less explored. Here, we show that a H DNP enhancement of over 50 can be obtained in viscous liquids at a magnetic field of 9.
View Article and Find Full Text PDFMol Biol (Mosk)
April 2023
Department of Physics, Novosibirsk State University, Novosibirsk, 630090 Russia.
New zwitter-ionic oligonucleotide derivatives containing 1,2,3,4-tetrahydroisoquinoline-7-sulfonyl phosphoramidate group are described. Automated synthesis of these compounds was carried out according to the β-cyanoethyl phosphoramidite scheme via the Staudinger reaction between 2-trifluoroacetyl-1,2,3,4-tetrahydroisoquinoline-7-sulfonyl azide and phosphite triester within oligonucleotide grafted to polymer support. 1,2,3,4-Tetrahydroisoquinoline-7-sulfonyl phosphoramidate group (THIQ) was stable under the conditions of standard oligonucleotide synthesis, including the removal of protective groups and cleavage of the oligonucleotide from the polymer support by treatment with a mixture of concentrated aqueous solutions of ammonia and methylamine (1 : 1) at 55°C.
View Article and Find Full Text PDFMolecules
February 2023
N.N. Vorozhtsov Institute of Organic Chemistry, 9 Ac. Lavrentiev Avenue, Novosibirsk 630090, Russia.
Nitroxide biradicals are efficient polarizing agents in dynamic nuclear polarization (DNP) solid-state nuclear magnetic resonance. Many recently reported radicals possess substantial DNP efficiency in organic solvents but have poor solubility in water media which is unfavorable for biological applications. In this paper, we report DNP efficiency at a high magnetic field for two water-soluble biradicals resistant to reducing media.
View Article and Find Full Text PDFMolecules
January 2023
N.N. Vorozhtsov Institute of Organic Chemistry, Siberian Branch of Russian Academy of Sciences, 630090 Novosibirsk, Russia.
X-ray diffraction analysis and IR spectroscopy were used to study the products of the interaction of vinyl cations CH and CH (Cat) (as salts of carborane anion CHBCl) with basic molecules of water, alcohols, and acetone that can crystallize from solutions in dichloromethane and CHF. Interaction with water, as content increased, proceeded via three-stages. (1) adduct Cat·OH forms in which HO binds (through the O atom) to the C=C bond of the cation with the same strength as seen in the binding to Na in Na(HO).
View Article and Find Full Text PDFInt J Mol Sci
January 2023
N.N. Vorozhtsov Institute of Organic Chemistry, Siberian Branch of Russian Academy of Sciences, 630090 Novosibirsk, Russia.
It was found that alkyl carbocations, when their salts are dissolved in common organochlorine solvents, decompose to unsaturated vinyl-type carbocations that are stabler in solutions. This is a convenient method for obtaining salts of vinyl cations and their solutions for further research.
View Article and Find Full Text PDFChemistry
February 2023
Institut für Anorganische Chemie und Kristallographie, Universität Bremen, Leobener Strasse 7, 28359, Bremen, Germany.
Sterically encumbered bis(m-terphenyl)chalcogenides, (2,6-Mes C H ) E (E=S, Se, Te) were obtained by the reaction of the chalcogen tetrafluorides, EF , with three equivalents of m-terphenyl lithium, 2,6-Mes C H Li. The single-electron oxidation of (2,6-Mes C H ) Te using XeF /K[B(C F ) ] afforded the radical cation [(2,6-Mes C H ) Te][B(C F ) ] that was isolated and fully characterized. The electrochemical oxidation of the lighter homologs (2,6-Mes C H ) E (E=S, Se) was irreversible and impaired by rapid decomposition.
View Article and Find Full Text PDFOrg Biomol Chem
November 2022
N.N. Vorozhtsov Institute of Organic Chemistry, Pr. Ak. Lavrentieva 9, Novosibirsk 630090, Russia.
Noncatalytic halogenation of adamantane (AdH) with bromine or iodine monochloride was found to proceed according to the cluster mechanism featuring high kinetic order with respect to the halogen and a sharp decrease in the calculated energy barrier when additional halogen molecules are involved in the quantum chemical system. In the reaction with Br, 1-AdBr formed selectively. This reaction proved to be first order in terms of AdH and approximately seventh order in Br, and its rate does not depend on the rising concentration of HBr.
View Article and Find Full Text PDFACS Omega
August 2022
N.N. Vorozhtsov Institute of Organic Chemistry, Siberian Branch of Russian Academy of Sciences, Novosibirsk 630090, Russia.
The butylene carbocation in its salts with anions CHBF and CHBCl forms isomers CH=C-CH-CH () and CH-C=CH-CH (), which were characterized here by infrared (IR) spectroscopy and X-ray diffraction analysis. The strongest influence on the structure of the cations is exerted by geometric ordering of their anionic environment. In the crystalline phase, the cations uniformly interact with neighboring anions, and the C=C bond is located in the middle part of the cations forming a -CH=C- moiety with the highest positive charge on it and the lowest νC=C frequency, at 1490 cm.
View Article and Find Full Text PDFMolecules
May 2022
N.N. Vorozhtsov Institute of Organic Chemistry, Siberian Branch of Russian Academy of Sciences (SB RAS), 9 Acad. Lavrentiev Avenue, Novosibirsk 630090, Russia.
Spiro-substituted nitroxyl biradicals are widely used as reagents for dynamic nuclear polarization (DNP), which is especially important for biopolymer research. The main criterion for their applicability as polarizing agents is the value of the spin-spin exchange interaction parameter (), which can vary considerably when different couplers are employed that link the radical moieties. This paper describes a study on biradicals, with a ferrocene-1,1'-diyl-substituted 1,3-diazetidine-2,4-diimine coupler, that have never been used before as DNP agents.
View Article and Find Full Text PDFMolecules
March 2022
N.N. Vorozhtsov Institute of Organic Chemistry SB RAS, Academician Lavrentiev Ave. 9, 630090 Novosibirsk, Russia.
Pyrrolidine nitroxides with four bulky alkyl substituents adjacent to N-O group are known for their high resistance to bioreduction. The 3,4-unsubstituted 2--butyl-2-ethylpyrrolidine-1-oxyls were prepared from the corresponding 2--butyl-1-pyrroline-1-oxides via either the addition of ethinylmagnesium bromide with subsequent hydrogenation or via treatment with ethyllithium. The new nitroxides showed excellent stability to reduction with ascorbate with no evidence for additional large hyperfine couplings in the EPR spectra.
View Article and Find Full Text PDFJ Chem Phys
February 2022
N. N. Vorozhtsov Institute of Organic Chemistry SB RAS, 630090 Novosibirsk, Russia.
Triplet states of photoexcited organic molecules are promising spin labels with advanced spectroscopic properties for pulsed dipolar electron paramagnetic resonance (PD EPR) spectroscopy. Recently proposed triplet fullerene labels have shown great potential for double electron-electron resonance (DEER) distance measurements as "observer spins" due to a high quantum yield of the triplet state, hyperpolarization and relatively narrow EPR spectra. Here, we demonstrate the applicability of fullerene labels to other PD EPR techniques, such as relaxation induced dipolar modulation enhancement (RIDME) and laser induced magnetic dipolar spectroscopy (LaserIMD).
View Article and Find Full Text PDFBiomed Pharmacother
March 2022
Institute of Cytology and Genetics, Siberian Branch of Russian Academy of Sciences (SB RAS), Pr. Lavrentyeva 10, 630090 Novosibirsk, Russia. Electronic address:
Striatal-enriched protein tyrosine phosphatase (STEP) is a signal transduction protein involved in the pathogenesis of neuropathologies. A STEP inhibitor (TC-2153) has antipsychotic and antidepressant effects. Here, we evaluated the role of STEP in fear-induced aggression using Norway rats selectively bred for 90 generations for either high aggression toward humans (aggressive rats) or its absence (tame rats).
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