Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses.

Ocean microbes drive biogeochemical cycling on a global scale. However, this cycling is constrained by viruses that affect community composition, metabolic activity, and evolutionary trajectories. Owing to challenges with the sampling and cultivation of viruses, genome-level viral diversity remains poorly described and grossly understudied, with less than 1% of observed surface-ocean viruses known.

The Labile Limits of Forbidden Interactions.

Forbidden links are defined as pairwise interactions that are prevented by the biological traits of the species. We focus here on the neglected importance of intraspecific trait variation in the forbidden link concept. We show how intraspecific trait variability at different spatiotemporal scales, and through ontogeny, reduces the expected prevalence of forbidden interactions.

Anthropogenic areas as incidental substitutes for original habitat.

One speaks of ecological substitutes when an introduced species performs, to some extent, the ecosystem function of an extirpated native species. We suggest that a similar case exists for habitats. Species evolve within ecosystems, but habitats can be destroyed or modified by natural and human-made causes.

Putative linkages between below- and aboveground mutualisms during alien plant invasions.

Evidence of the fundamental role of below-aboveground links in controlling ecosystem processes is mostly based on studies done with soil herbivores or mutualists and aboveground herbivores. Much less is known about the links between belowground and aboveground mutualisms, which have been studied separately for decades. It has not been until recently that these mutualisms-mycorrhizas and legume-rhizobia on one hand, and pollinators and seed dispersers on the other hand-have been found to influence each other, with potential ecological and evolutionary consequences.

Global abundance of planktonic heterotrophic protists in the deep ocean.

The dark ocean is one of the largest biomes on Earth, with critical roles in organic matter remineralization and global carbon sequestration. Despite its recognized importance, little is known about some key microbial players, such as the community of heterotrophic protists (HP), which are likely the main consumers of prokaryotic biomass. To investigate this microbial component at a global scale, we determined their abundance and biomass in deepwater column samples from the Malaspina 2010 circumnavigation using a combination of epifluorescence microscopy and flow cytometry.

Automatic determination of copper by in-syringe dispersive liquid-liquid microextraction of its bathocuproine-complex using long path-length spectrophotometric detection.

The recently proposed concept of automatic in-syringe dispersive liquid-liquid microextraction was successfully applied to the determination of copper in environmental water samples. Bathocuproine was added to the organic phase as a selective reagent, resulting in the formation of a complex with copper. Dispersion was achieved by aspiration of the organic phase and then the watery phase into the syringe as rapidly as possible.

The oligotrophic ocean is heterotrophic.

Incubation (in vitro) and incubation-free (in situ) methods, each with their own advantages and limitations, have been used to derive estimates of net community metabolism in the oligotrophic subtropical gyres of the open ocean. The hypothesis that heterotrophic communities are prevalent in most oligotrophic regions is consistent with the available evidence and supported by scaling relationships showing that heterotrophic communities prevail in areas of low gross primary production, low chlorophyll a, and warm water, conditions found in the oligotrophic ocean. Heterotrophic metabolism can prevail where heterotrophic activity is subsidized by organic carbon inputs from the continental shelf or the atmosphere and from nonphotosynthetic autotrophic and mixotrophic metabolic pathways.

Pollination patterns and plant breeding systems in the Galapagos: a review.

Background: Despite the importance of the Galápagos Islands for the development of central concepts in ecology and evolution, the understanding of many ecological processes in this archipelago is still very basic. One such process is pollination, which provides an important service to both plants and their pollinators. The rather modest level of knowledge on this subject has so far limited our predictive power on the consequences of the increasing threat of introduced plants and pollinators to this unique archipelago.

Frugivory and seed dispersal in the Galápagos: what is the state of the art?

The Galápagos are considered a model oceanic archipelago, with unique flora and fauna currently threatened by alien invasive species. Seed dispersal is an important ecosystem function with consequences for plant population dynamics and vegetation structure. Hence, understanding the seed dispersal abilities of the assemblages of frugivores will inform scientists and managers of the dynamics of plant invasions and improve management planning.

Biological invasions as disruptors of plant reproductive mutualisms.

Invasive alien species affect the composition and functioning of invaded ecosystems in many ways, altering ecological interactions that have arisen over evolutionary timescales. Specifically, disruptions to pollination and seed-dispersal mutualistic interactions are often documented, although the profound implications of such impacts are not widely recognized. Such disruptions can occur via the introduction of alien pollinators, seed dispersers, herbivores, predators or plants, and we define here the many potential outcomes of each situation.

Analytical tools for solitons and periodic waves corresponding to phonons on Lennard-Jones lattices in helical proteins.

We study the propagation of solitons along the hydrogen bonds of an alpha helix. Modeling the hydrogen and peptide bonds with Lennard-Jones potentials, we show that the solitons can appear spontaneously and have long lifetimes. Remarkably, even if no explicit solution is known for the Lennard-Jones potential, the solitons can be characterized analytically with a good quantitative agreement using formulas for a Toda potential with parameters fitted to the Lennard-Jones potential.

Rapid identification of Salmonella typhimurium, S. enteritidis and S. virchow isolates by polymerase chain reaction based fingerprinting methods.

In this study we used and evaluated three rapid molecular typing methods for the identification of three frequent, clinically significant Salmonella serovars on the basis of the ease, simplicity and reproducibility of the chosen methods. We determined the genetic diversity among several isolates of Salmonella enteritidis, S. typhimiurium and S.